Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 0.0e+00 1106.3 573 100.0
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 2.6e-189 666.0 573 65.6
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.4e-187 660.2 572 65.7
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 3.5e-186 655.6 573 64.7
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.9e-179 633.3 576 63.4
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 3.5e-178 629.0 573 64.0
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 4.9e-172 608.6 570 61.2
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 1.8e-169 600.1 574 59.9
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 2.2e-164 583.2 556 61.5
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 6.7e-161 571.6 554 59.4
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 6.2e-159 565.1 537 60.1
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 6.9e-158 561.6 552 57.6
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.0e-156 557.8 574 57.7
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 1.0e-156 557.8 561 58.3
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 4.9e-156 555.4 573 58.3
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 1.4e-155 553.9 577 57.4
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 4.2e-155 552.4 546 58.6
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 5.5e-155 552.0 540 60.0
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 2.3e-153 546.6 566 57.2
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 3.9e-153 545.8 578 57.3
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 6.7e-153 545.0 543 58.9
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 4.3e-152 542.3 582 56.9
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 9.7e-152 541.2 574 55.6
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 2.2e-151 540.0 567 55.6
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 3.7e-151 539.3 578 57.6
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 4.8e-151 538.9 581 57.1
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 4.8e-151 538.9 565 56.1
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 6.3e-151 538.5 539 58.1
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 2.4e-150 536.6 560 56.2
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 5.3e-150 535.4 531 59.5
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 6.9e-150 535.0 558 57.7
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 6.9e-150 535.0 572 56.5
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 5.9e-149 531.9 570 56.7
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 7.6e-149 531.6 580 55.0
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 1.0e-148 531.2 555 57.7
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 1.3e-148 530.8 565 55.4
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 2.9e-148 529.6 545 56.5
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 3.8e-148 529.3 570 56.5
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 5.0e-148 528.9 582 55.0
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.4e-147 527.3 553 57.3
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 3.2e-147 526.2 574 55.2
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 1.2e-146 524.2 527 58.4
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 1.6e-146 523.9 577 55.5
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 3.6e-146 522.7 575 56.3
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.6e-146 522.7 575 56.3
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 3.6e-146 522.7 583 55.1
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 3.6e-146 522.7 583 55.1
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 1.4e-145 520.8 530 58.1
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 1.4e-145 520.8 575 54.4
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 3.0e-145 519.6 541 56.6
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 8.8e-145 518.1 575 56.0
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 8.8e-145 518.1 564 54.4
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 1.1e-144 517.7 559 57.4
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 1.5e-144 517.3 532 57.5
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 3.3e-144 516.2 532 57.0
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.8e-143 513.1 557 55.1
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 8.2e-143 511.5 564 54.8
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.1e-142 511.1 546 55.5
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.1e-142 511.1 546 55.5
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 3.1e-142 509.6 595 53.8
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 3.1e-142 509.6 543 56.5
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 4.1e-142 509.2 565 55.0
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 4.1e-142 509.2 563 54.4
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 1.5e-141 507.3 546 55.1
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 1.0e-140 504.6 617 51.4
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 3.8e-140 502.7 570 54.4
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 1.9e-139 500.4 557 54.8
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 1.2e-138 497.7 590 53.7
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 3.6e-138 496.1 562 53.4
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 5.1e-137 492.3 549 55.0
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 8.8e-137 491.5 535 53.3
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 3.3e-136 489.6 574 53.5
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 5.7e-136 488.8 585 52.1
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 2.2e-135 486.9 529 53.9
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 3.7e-135 486.1 578 51.7
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 1.1e-134 484.6 552 53.1
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 1.2e-133 481.1 529 53.5
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 1.5e-133 480.7 554 53.2
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 3.4e-133 479.6 563 52.8
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 4.5e-133 479.2 563 52.6
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 5.9e-133 478.8 529 53.5
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 7.7e-133 478.4 566 53.4
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 2.2e-132 476.9 540 54.1
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 1.9e-131 473.8 533 54.8
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.5e-131 473.4 495 56.0
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 4.2e-131 472.6 542 52.6
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 4.7e-130 469.2 532 53.2
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 3.9e-129 466.1 535 52.7
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 3.9e-129 466.1 535 52.7
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 6.7e-129 465.3 575 51.1
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 8.8e-129 464.9 532 53.8
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 1.5e-128 464.2 532 53.6
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 1.7e-127 460.7 530 52.5
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 5.3e-126 455.7 564 50.9
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 5.9e-125 452.2 551 51.2
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 2.2e-124 450.3 532 51.5
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 1.1e-123 448.0 512 52.0
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 1.5e-123 447.6 576 50.5
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 8.0e-122 441.8 447 56.6
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 2.7e-117 426.8 631 44.4
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 5.9e-117 425.6 460 57.0
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 1.3e-116 424.5 412 60.7
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 1.1e-115 421.4 596 47.5
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 9.4e-115 418.3 480 52.9
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 4.7e-114 416.0 527 47.4
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 1.0e-113 414.8 577 46.8
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 1.0e-113 414.8 528 47.7
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.2e-112 411.4 529 48.6
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.2e-112 411.4 535 49.0
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.0e-112 410.6 528 47.3
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 3.4e-112 409.8 529 48.6
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 1.2e-109 401.4 582 45.5
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.0e-108 398.3 575 47.5
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 3.3e-107 393.3 493 48.7
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 8.0e-106 388.7 527 46.7
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 1.2e-104 384.8 500 49.4
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.0e-104 384.0 540 45.2
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 3.7e-103 379.8 530 46.4
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 3.1e-102 376.7 452 49.6
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 5.6e-99 365.9 550 43.6
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 1.9e-94 350.9 496 45.2
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 4.1e-94 349.7 477 45.3
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 4.6e-93 346.3 496 44.4
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 7.3e-91 339.0 495 46.3
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 4.1e-86 323.2 489 45.0
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 1.3e-84 318.2 375 50.7
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 8.6e-84 315.5 275 65.8
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 3.3e-83 313.5 375 51.7
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 4.0e-81 306.6 509 41.3
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 1.3e-79 301.6 260 68.1
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 1.9e-78 297.7 396 47.0
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 1.6e-74 284.6 366 47.5
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 9.9e-72 275.4 348 49.4
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 3.8e-71 273.5 486 38.9
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 7.1e-70 269.2 322 51.2
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 9.2e-70 268.9 326 48.8
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 3.2e-62 243.8 344 45.9
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 3.0e-60 237.3 121 95.0
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 2.9e-55 220.7 187 64.2
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 3.1e-49 200.7 328 44.5
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 1.8e-44 184.9 103 84.5
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 1.3e-36 158.7 394 29.4
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 2.5e-35 154.5 208 48.6
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 8.5e-31 139.4 122 68.0
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 2.3e-28 131.3 219 43.8
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 5.7e-27 126.7 163 50.3
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 2.2e-26 124.8 172 50.0
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 1.4e-25 122.1 171 49.7
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 2.6e-24 117.9 160 48.8
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 7.7e-24 116.3 155 47.7
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 8.5e-23 112.8 81 74.1
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 2.5e-22 111.3 105 59.0
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.4e-20 105.5 58 87.9
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 2.8e-18 97.8 110 49.1
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 2.8e-18 97.8 252 35.3
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.4e-17 95.5 79 64.6
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 1.4e-17 95.5 103 53.4
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 7.0e-17 93.2 51 84.3
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.9e-15 87.8 51 82.4
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.4e-14 85.5 51 80.4
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 2.5e-14 84.7 79 58.2
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 9.4e-14 82.8 55 72.7
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 9.4e-14 82.8 110 41.8
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 4.7e-13 80.5 141 41.1
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 2.3e-12 78.2 51 74.5
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 7.4e-11 73.2 62 62.9
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 3.7e-10 70.9 84 52.4
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 8.2e-10 69.7 103 39.8
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 2.4e-09 68.2 75 56.0
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.6e-08 65.5 41 73.2
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 2.6e-08 64.7 38 86.8
CDE02G0679 Ceratophyllum demersum HOM05D042044 ORTHO05D004670 5.5e-06 57.0 70 47.1


User provided reference genes

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