Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 1.9e-127 459.1 230 100.0
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 2.1e-81 306.2 213 75.1
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 2.8e-62 242.7 230 59.1
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 2.5e-58 229.6 197 62.4
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 1.4e-48 197.2 205 53.2
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 3.4e-47 192.6 220 48.6
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 7.0e-45 184.9 178 51.1
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 7.8e-44 181.4 154 58.4
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 5.1e-43 178.7 159 56.6
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 1.1e-42 177.6 207 50.2
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 1.5e-42 177.2 249 45.8
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.9e-42 176.8 200 50.5
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 1.9e-42 176.8 173 50.9
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.9e-42 176.8 172 51.7
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 2.5e-42 176.4 211 49.8
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 2.5e-42 176.4 211 49.8
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 4.3e-42 175.6 212 46.7
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 4.3e-42 175.6 200 47.5
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 9.5e-42 174.5 220 46.8
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 1.6e-41 173.7 211 48.8
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 1.6e-41 173.7 211 48.8
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 1.6e-41 173.7 208 48.6
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 2.1e-41 173.3 203 45.3
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.8e-41 172.9 209 48.3
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 3.6e-41 172.6 178 52.2
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 3.6e-41 172.6 192 47.9
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 4.7e-41 172.2 229 46.3
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 4.7e-41 172.2 229 46.3
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 6.2e-41 171.8 150 57.3
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 6.2e-41 171.8 208 47.1
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 8.1e-41 171.4 161 55.3
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 8.1e-41 171.4 183 54.6
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 1.1e-40 171.0 192 52.1
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 1.4e-40 170.6 196 49.0
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 3.1e-40 169.5 180 50.0
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 3.1e-40 169.5 213 45.5
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 4.0e-40 169.1 162 56.8
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 4.0e-40 169.1 147 57.8
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 6.8e-40 168.3 214 48.1
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 6.8e-40 168.3 199 48.7
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 6.8e-40 168.3 199 48.7
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 6.8e-40 168.3 188 47.9
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 8.9e-40 167.9 205 48.3
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 8.9e-40 167.9 215 45.6
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.2e-39 167.5 160 51.2
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 1.2e-39 167.5 161 54.7
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.5e-39 167.2 178 52.2
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 2.0e-39 166.8 169 47.9
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 2.6e-39 166.4 206 43.2
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.6e-39 166.4 146 54.8
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 5.8e-39 165.2 180 52.2
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 1.3e-38 164.1 155 50.3
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 1.3e-38 164.1 155 50.3
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.7e-38 163.7 172 47.7
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.7e-38 163.7 158 53.2
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.7e-38 163.7 154 54.5
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.7e-38 163.7 148 52.7
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.7e-38 163.7 218 42.7
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 2.9e-38 162.9 186 46.2
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 4.9e-38 162.2 218 44.0
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 4.9e-38 162.2 218 44.0
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 6.4e-38 161.8 195 46.7
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 8.3e-38 161.4 156 53.8
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 8.3e-38 161.4 164 48.2
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.1e-37 161.0 146 53.4
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 1.1e-37 161.0 174 46.6
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 1.4e-37 160.6 155 49.7
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 1.9e-37 160.2 251 42.2
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 2.4e-37 159.8 206 44.2
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.4e-37 159.8 220 42.7
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 3.2e-37 159.5 156 52.6
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 3.2e-37 159.5 185 45.9
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 3.2e-37 159.5 185 45.9
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 3.2e-37 159.5 160 51.2
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 4.1e-37 159.1 216 44.0
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 4.1e-37 159.1 193 45.1
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 4.1e-37 159.1 188 44.7
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 5.4e-37 158.7 231 40.7
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 7.1e-37 158.3 186 45.2
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 7.1e-37 158.3 242 43.4
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 7.1e-37 158.3 196 46.9
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 7.1e-37 158.3 184 49.5
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 9.2e-37 157.9 186 45.2
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 9.2e-37 157.9 185 45.4
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 9.2e-37 157.9 219 41.6
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 1.2e-36 157.5 158 48.7
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 1.2e-36 157.5 197 44.7
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 2.1e-36 156.8 158 53.2
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 2.1e-36 156.8 199 45.7
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 2.7e-36 156.4 209 43.5
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 2.7e-36 156.4 209 42.6
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 6.0e-36 155.2 148 53.4
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 6.0e-36 155.2 229 45.9
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 1.0e-35 154.5 226 40.3
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.3e-35 153.3 205 44.4
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 2.3e-35 153.3 158 48.7
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 2.3e-35 153.3 208 46.2
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.3e-35 153.3 165 49.1
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 3.9e-35 152.5 161 53.4
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 6.6e-35 151.8 176 44.9
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 6.6e-35 151.8 166 50.0
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 8.6e-35 151.4 155 49.7
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 2.5e-34 149.8 167 54.5
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 9.5e-34 147.9 216 40.3
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 3.6e-33 146.0 202 39.6
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.4e-32 143.3 229 41.9
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 3.1e-32 142.9 217 41.5
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 6.8e-32 141.7 145 55.9
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 6.8e-32 141.7 238 35.3
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.2e-31 141.0 230 42.2
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.5e-31 140.6 230 41.7
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 3.4e-31 139.4 144 50.0
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 3.4e-31 139.4 223 37.7
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 9.9e-31 137.9 210 39.0
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 1.3e-30 137.5 152 50.0
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 2.9e-30 136.3 191 40.8
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 4.9e-30 135.6 158 50.6
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 8.4e-30 134.8 147 46.3
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 1.4e-29 134.0 166 47.6
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 1.9e-29 133.7 178 43.8
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 3.2e-29 132.9 175 42.9
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 4.2e-29 132.5 162 45.7
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 5.4e-29 132.1 162 45.7
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 9.2e-29 131.3 180 42.8
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 1.6e-28 130.6 182 43.4
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 4.6e-28 129.0 222 38.3
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 4.6e-28 129.0 177 41.2
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 7.8e-28 128.3 155 46.5
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.3e-27 127.5 164 42.7
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 3.9e-27 125.9 180 41.7
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 5.1e-27 125.6 170 41.8
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 6.6e-27 125.2 198 38.4
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 6.6e-27 125.2 198 38.4
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 8.7e-27 124.8 155 46.5
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 1.1e-26 124.4 173 44.5
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 1.1e-26 124.4 170 42.4
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 1.5e-26 124.0 154 43.5
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 3.3e-26 122.9 165 42.4
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 4.3e-26 122.5 150 45.3
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 7.3e-26 121.7 181 40.3
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 1.3e-25 120.9 173 38.7
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 2.4e-24 116.7 243 35.8
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 9.0e-24 114.8 148 43.9
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.5e-23 114.0 114 50.0
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.6e-23 113.2 114 49.1
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.3e-22 110.9 114 48.2
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.9e-22 109.8 154 39.6
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 9.3e-21 104.8 128 46.9
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.7e-20 103.2 154 41.6
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 3.9e-19 99.4 157 38.9
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.1e-18 97.8 170 38.2
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 5.8e-15 85.5 144 33.3
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 2.2e-14 83.6 64 60.9
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 3.8e-14 82.8 167 35.3
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 2.4e-13 80.1 96 42.7
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 2.4e-13 80.1 167 33.5
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 1.0e-11 74.7 187 31.6
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 1.3e-11 74.3 192 31.2
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 2.3e-11 73.6 146 36.3
Rhsim04G0103000 Rhododendron simsii HOM05D004173 ORTHO05D004885 6.7e-11 72.0 147 42.2
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 1.5e-10 70.9 90 35.6
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 1.9e-10 70.5 167 33.5
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 3.3e-10 69.7 79 44.3
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 1.3e-09 67.8 71 46.5


User provided reference genes

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