Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0179300 Rhododendron simsii HOM05D005937 ORTHO05D008151 0.0e+00 1729.5 860 100.0
vmacro10023 Vaccinium macrocarpon HOM05D005937 ORTHO05D008151 0.0e+00 1374.8 900 78.8
Actinidia00667 Actinidia chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1353.2 867 79.7
CSS0046957 Camellia sinensis var. sinensis HOM05D005937 ORTHO05D008151 0.0e+00 1324.3 897 77.7
TAR633G1521 Trochodendron aralioides HOM05D005937 ORTHO05D008151 0.0e+00 1236.1 873 73.0
GSVIVG01032777001 Vitis vinifera HOM05D005937 ORTHO05D008151 0.0e+00 1225.7 855 72.4
Potri.010G185800 Populus trichocarpa HOM05D005937 ORTHO05D008151 0.0e+00 1224.9 846 71.5
Atru.chr12.85 Acer truncatum HOM05D005937 ORTHO05D008151 0.0e+00 1221.1 870 70.2
Duzib114G0783 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1221.1 868 71.2
Haze_17256 Corylus avellana HOM05D005937 ORTHO05D008151 0.0e+00 1219.5 819 73.0
Manes.10G010100 Manihot esculenta HOM05D005937 ORTHO05D008151 0.0e+00 1217.6 870 71.6
MD07G1224900 Malus domestica HOM05D005937 ORTHO05D008151 0.0e+00 1216.8 878 71.1
QL08p063536 Quercus lobata HOM05D005937 ORTHO05D008151 0.0e+00 1215.7 872 71.6
Nitab4.5_0000058g0250 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1215.3 849 72.0
Lj1C959G18 Lonicera japonica HOM05D005937 ORTHO05D008151 0.0e+00 1207.2 754 78.9
Nitab4.5_0000969g0030 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1206.8 878 69.7
Hma1.2p1_0523F.1_g172080 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 0.0e+00 1206.4 814 73.2
Thecc.10G012700 Theobroma cacao HOM05D005937 ORTHO05D008151 0.0e+00 1204.1 877 70.8
CiPaw.02G194600 Carya illinoinensis HOM05D005937 ORTHO05D008151 0.0e+00 1203.3 874 68.9
TWI09G1402 Tripterygium wilfordii HOM05D005937 ORTHO05D008151 0.0e+00 1201.4 867 71.0
Ciclev10030686m.g Citrus clementina HOM05D005937 ORTHO05D008151 0.0e+00 1195.3 877 70.4
Migut.F01477 Erythranthe guttata HOM05D005937 ORTHO05D008151 0.0e+00 1194.9 874 68.2
Prupe.2G253500 Prunus persica HOM05D005937 ORTHO05D008151 0.0e+00 1186.4 870 69.7
Nn2g10945 Nelumbo nucifera HOM05D005937 ORTHO05D008151 0.0e+00 1182.2 850 70.5
RcHm_v2.0_Chr1g0370701 Rosa chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1181.4 870 67.8
Sabra10G0143100 Salix brachista HOM05D005937 ORTHO05D008151 0.0e+00 1178.7 907 65.7
Sopen06g016900 Solanum pennellii HOM05D005937 ORTHO05D008151 0.0e+00 1178.3 878 68.9
FAN01G2918 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1177.9 873 67.0
Solyc06g051080.4 Solanum lycopersicum HOM05D005937 ORTHO05D008151 0.0e+00 1176.8 880 69.1
FvH4_7g24830 Fragaria vesca HOM05D005937 ORTHO05D008151 0.0e+00 1176.4 887 66.2
FAN06G2004 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1171.4 874 66.7
Gorai.011G291300 Gossypium raimondii HOM05D005937 ORTHO05D008151 0.0e+00 1171.0 870 69.0
Dinv21757 Davidia involucrata HOM05D005937 ORTHO05D008151 0.0e+00 1169.8 885 70.2
FAN03G2902 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1169.5 879 66.8
CAN.G19.18 Capsicum annuum HOM05D005937 ORTHO05D008151 0.0e+00 1167.5 853 69.2
Oeu011112.1 Olea europaea HOM05D005937 ORTHO05D008151 0.0e+00 1166.0 960 64.3
Eucgr.J00183 Eucalyptus grandis HOM05D005937 ORTHO05D008151 0.0e+00 1158.7 820 70.2
Gohir.A10G239000 Gossypium hirsutum HOM05D005937 ORTHO05D008151 0.0e+00 1154.0 851 70.2
Glyma.11G231700 Glycine max HOM05D005937 ORTHO05D008151 0.0e+00 1147.9 866 67.2
Duzib106G1087 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1147.5 868 68.8
Phvul.001G244900 Phaseolus vulgaris HOM05D005937 ORTHO05D008151 0.0e+00 1140.9 864 65.4
Hund15900 Selenicereus undatus HOM05D005937 ORTHO05D008151 0.0e+00 1140.9 859 66.7
Ca_15144_v3 Cicer arietinum L. HOM05D005937 ORTHO05D008151 0.0e+00 1140.6 841 67.7
Lalb_Chr23g0277021 Lupinus albus HOM05D005937 ORTHO05D008151 0.0e+00 1140.2 882 65.4
HanXRQChr07g0203141 Helianthus annuus HOM05D005937 ORTHO05D008151 0.0e+00 1130.5 891 66.3
ClCG11G006010 Citrullus lanatus HOM05D005937 ORTHO05D008151 0.0e+00 1129.0 817 67.4
Sed0020446 Sechium edule HOM05D005937 ORTHO05D008151 0.0e+00 1129.0 825 67.6
CsaV3_6G001960 Cucumis sativus L. HOM05D005937 ORTHO05D008151 0.0e+00 1127.9 817 67.9
Medtr3g071440 Medicago truncatula HOM05D005937 ORTHO05D008151 0.0e+00 1127.9 873 66.2
Cpa.g.sc19.149 Carica papaya HOM05D005937 ORTHO05D008151 0.0e+00 1125.2 916 64.0
CANSAT56G2579 Cannabis sativa HOM05D005937 ORTHO05D008151 0.0e+00 1124.8 880 65.1
DCAR_024814 Daucus carota HOM05D005937 ORTHO05D008151 0.0e+00 1120.9 844 69.2
arahy.Tifrunner.gnm1.ann1.6RBS9T Arachis hypogaea HOM05D005937 ORTHO05D008151 0.0e+00 1119.0 816 66.4
arahy.Tifrunner.gnm1.ann1.0WF02T Arachis hypogaea HOM05D005937 ORTHO05D008151 0.0e+00 1118.6 816 66.2
Glyma.18G025500 Glycine max HOM05D005937 ORTHO05D008151 0.0e+00 1118.2 863 66.4
Lsat_1_v5_gn_2_123720 Lactuca sativa HOM05D005937 ORTHO05D008151 0.0e+00 1118.2 838 67.4
Ah.16g103770 Amaranthus hybridus HOM05D005937 ORTHO05D008151 0.0e+00 1112.8 828 66.5
VMungo1383G1379 Vigna mungo HOM05D005937 ORTHO05D008151 0.0e+00 1112.8 854 66.3
TPR.G10616 Trifolium pratense HOM05D005937 ORTHO05D008151 0.0e+00 1111.3 872 65.0
Psat5g130440 Pisum sativum HOM05D005937 ORTHO05D008151 0.0e+00 1110.5 818 67.8
Cfa001293 Carpinus fangiana HOM05D005937 ORTHO05D008151 0.0e+00 1108.2 695 78.0
Lj6g0019628 Lotus japonicus HOM05D005937 ORTHO05D008151 0.0e+00 1107.8 805 68.4
EL10Ac2g04871 Beta vulgaris HOM05D005937 ORTHO05D008151 0.0e+00 1102.8 927 60.8
ECA238G3710 Erigeron canadensis HOM05D005937 ORTHO05D008151 0.0e+00 1096.3 867 66.6
AT3G56040 Arabidopsis thaliana HOM05D005937 ORTHO05D008151 0.0e+00 1087.0 879 63.5
PSO170G3027 Papaver somniferum HOM05D005937 ORTHO05D008151 0.0e+00 1086.6 830 66.6
CARHR166110 Cardamine hirsuta HOM05D005937 ORTHO05D008151 0.0e+00 1083.2 878 63.2
PSO017G4998 Papaver somniferum HOM05D005937 ORTHO05D008151 0.0e+00 1082.4 825 67.0
AL5G37310 Arabidopsis lyrata HOM05D005937 ORTHO05D008151 0.0e+00 1081.2 823 65.2
Thhalv10005783m.g Eutrema salsugineum HOM05D005937 ORTHO05D008151 0.0e+00 1078.5 883 63.0
THA.LOC104824329 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 0.0e+00 1078.5 869 63.4
Aa31LG10G10960 Aethionema arabicum HOM05D005937 ORTHO05D008151 0.0e+00 1077.0 865 63.5
Aqoxy4G02431 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 0.0e+00 1076.2 878 64.1
A09p48990 Brassica napus HOM05D005937 ORTHO05D008151 5.9e-312 1074.7 873 63.1
BraA09t40354Z Brassica rapa HOM05D005937 ORTHO05D008151 5.9e-312 1074.7 873 63.1
Sp5g06500 Schrenkiella parvula HOM05D005937 ORTHO05D008151 5.9e-312 1074.3 886 62.4
Peaxi162Scf00284g00620 Petunia axillaris HOM05D005937 ORTHO05D008151 4.1e-311 1071.2 878 65.3
C08p31350 Brassica napus HOM05D005937 ORTHO05D008151 7.1e-311 1070.5 874 62.9
THA.LOC104811372 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 5.8e-310 1067.4 819 65.4
unitig_60.g25670 Utricularia gibba HOM05D005937 ORTHO05D008151 2.1e-307 1058.9 832 64.3
FAN10G1632 Fragaria x ananassa HOM05D005937 ORTHO05D008151 2.7e-307 1058.5 894 61.9
Carub.0005s2277 Capsella rubella HOM05D005937 ORTHO05D008151 4.6e-307 1057.7 877 61.7
AUR62012278 Chenopodium quinoa HOM05D005937 ORTHO05D008151 5.6e-305 1050.8 817 63.6
Cc02_g06180 Coffea canephora HOM05D005937 ORTHO05D008151 6.2e-304 1047.3 641 78.5
PGR044G1548 Punica granatum HOM05D005937 ORTHO05D008151 1.4e-300 1036.2 810 64.6
Gohir.D10G250900 Gossypium hirsutum HOM05D005937 ORTHO05D008151 6.5e-293 1010.7 756 68.9
AUR62022920 Chenopodium quinoa HOM05D005937 ORTHO05D008151 2.1e-291 1005.7 739 66.2
ATR0174G021 Amborella trichopoda HOM05D005937 ORTHO05D008151 8.2e-288 993.8 885 57.9
Os05g0468600 Oryza sativa ssp. japonica HOM05D005937 ORTHO05D008151 1.2e-283 979.9 798 59.4
MELO3C008313.2 Cucumis melo HOM05D005937 ORTHO05D008151 4.6e-283 978.0 713 68.7
MBI15_g40751_MAGBIO Magnolia biondii HOM05D005937 ORTHO05D008151 7.9e-283 977.2 889 61.0
MD01G1156200 Malus domestica HOM05D005937 ORTHO05D008151 4.8e-280 968.0 700 68.1
COL.COLO4_25772 Corchorus olitorius HOM05D005937 ORTHO05D008151 3.4e-278 961.8 785 65.2
Zm00001eb351780 Zea mays HOM05D005937 ORTHO05D008151 8.8e-274 947.2 867 54.9
Sc10g0002520 Simmondsia chinensis HOM05D005937 ORTHO05D008151 4.0e-258 895.2 695 66.2
SGA_v2.0_scaffold395G50730 Striga asiatica HOM05D005937 ORTHO05D008151 7.7e-254 880.9 731 62.4
AagrBONN_evm.TU.Sc2ySwM_368.2798 Anthoceros agrestis HOM05D005937 ORTHO05D008151 8.3e-240 834.3 859 49.4
Pp3c22_15610 Physcomitrium patens HOM05D005937 ORTHO05D008151 8.0e-235 817.8 870 49.3
Mapoly0007s0127 Marchantia polymorpha HOM05D005937 ORTHO05D008151 1.8e-231 806.6 864 47.7
SMO141G0067 Selaginella moellendorffii HOM05D005937 ORTHO05D008151 3.6e-219 765.8 748 51.7
HPP92_007567 Vanilla planifolia HOM05D005937 ORTHO05D008151 4.0e-202 709.1 803 50.9
Hma1.2p1_0523F.1_g172070 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 2.9e-200 703.0 509 71.7
Actinidia00964 Actinidia chinensis HOM05D005937 ORTHO05D008151 1.5e-196 690.6 484 72.7
CBR_g61489 Chara braunii HOM05D005937 ORTHO05D008151 1.2e-182 644.4 566 52.5
Cre12.g554250 Chlamydomonas reinhardtii HOM05D005937 ORTHO05D008151 3.4e-153 546.6 796 39.2
PRCOL_00004696 Prasinoderma coloniale HOM05D005937 ORTHO05D008151 1.1e-151 541.6 694 42.8
CDE04G2743 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 1.5e-148 531.2 549 53.2
RhsimUnG0153700 Rhododendron simsii HOM05D005937 ORTHO05D008151 2.6e-148 530.4 300 86.7
Rhsim12G0073000 Rhododendron simsii HOM05D005937 ORTHO05D008151 2.2e-139 500.7 299 83.6
HPP92_007578 Vanilla planifolia HOM05D005937 ORTHO05D008151 2.4e-122 444.1 406 56.2
BcaB01g00040 Brassica carinata HOM05D005937 ORTHO05D008151 4.4e-108 396.7 394 57.4
SEGI_34891 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 6.2e-94 349.7 244 67.6
Aqoxy1G01260 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 1.3e-91 342.0 197 79.2
Aqoxy2G01148 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 2.9e-91 340.9 188 82.4
Aqoxy4G01451 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 1.9e-90 338.2 186 82.8
CDE04G2646 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 8.7e-88 329.3 246 63.8
HPP92_007579 Vanilla planifolia HOM05D005937 ORTHO05D008151 5.4e-82 310.1 217 68.7
MCO05G015 Micromonas commoda HOM05D005937 ORTHO05D008151 4.2e-74 283.9 423 37.6
BolC8t50756H Brassica oleracea HOM05D005937 ORTHO05D008151 4.0e-69 267.3 203 59.6
Ah.00g001390 Amaranthus hybridus HOM05D005937 ORTHO05D008151 9.1e-45 186.4 147 56.5
SEGI_09306 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 8.2e-38 163.3 131 55.7
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 2.9e-35 154.8 186 46.8
Aqoxy4G01461 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 6.1e-25 120.6 234 41.9
Rhsim12G0072900 Rhododendron simsii HOM05D005937 ORTHO05D008151 5.5e-18 97.4 54 92.6
Hund15853 Selenicereus undatus HOM05D005937 ORTHO05D026713 9.1e-13 80.1 107 43.9
Aqoxy4G00767 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 2.1e-09 68.9 91 46.2
SEGI_37602 Sequoiadendron giganteum HOM05D005937 ORTHO05D026713 5.2e-08 64.3 214 30.4


User provided reference genes

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