Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0178900 Rhododendron simsii HOM05D007655 ORTHO05D009698 4.6e-111 405.2 322 100.0
vmacro10028 Vaccinium macrocarpon HOM05D007655 ORTHO05D009698 2.6e-69 266.5 318 81.1
Lj1P959T25 Lonicera japonica HOM05D007655 ORTHO05D009698 5.2e-54 215.7 315 67.3
Hma1.2p1_0523F.1_g172110 Hydrangea macrophylla HOM05D007655 ORTHO05D009698 3.4e-53 213.0 329 54.1
Actinidia00669 Actinidia chinensis HOM05D007655 ORTHO05D009698 2.2e-52 210.3 312 42.9
GSVIVG01032781001 Vitis vinifera HOM05D007655 ORTHO05D009698 4.7e-47 192.6 295 74.6
Cfa013933 Carpinus fangiana HOM05D007655 ORTHO05D009698 6.2e-47 192.2 329 47.1
Haze_22616 Corylus avellana HOM05D007655 ORTHO05D009698 6.2e-47 192.2 325 48.3
TWI09G1069 Tripterygium wilfordii HOM05D007655 ORTHO05D009698 2.6e-45 186.8 324 63.9
TAR131G0001 Trochodendron aralioides HOM05D007655 ORTHO05D009698 3.8e-44 183.0 327 65.7
TAR623G1347 Trochodendron aralioides HOM05D007655 ORTHO05D009698 3.8e-44 183.0 327 65.7
Cc00_g02280 Coffea canephora HOM05D007655 ORTHO05D009698 8.4e-44 181.8 317 49.2
QL08p063505 Quercus lobata HOM05D007655 ORTHO05D009698 2.1e-42 177.2 332 61.4
RcHm_v2.0_Chr1g0370651 Rosa chinensis HOM05D007655 ORTHO05D009698 2.1e-42 177.2 322 62.7
DCAR_029510 Daucus carota HOM05D007655 ORTHO05D009698 1.6e-39 167.5 299 36.1
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 2.1e-39 167.2 324 50.9
Gohir.A06G170600 Gossypium hirsutum HOM05D007655 ORTHO05D009698 2.4e-38 163.7 334 53.6
Atru.chr12.88 Acer truncatum HOM05D007655 ORTHO05D009698 5.2e-38 162.5 326 39.6
Nitab4.5_0006468g0020 Nicotiana tabacum HOM05D007655 ORTHO05D009698 1.2e-37 161.4 292 62.3
FAN06G4929 Fragaria x ananassa HOM05D007655 ORTHO05D009698 2.6e-37 160.2 322 51.9
Nitab4.5_0002701g0030 Nicotiana tabacum HOM05D007655 ORTHO05D009698 3.4e-37 159.8 292 47.9
CiPaw.02G194200 Carya illinoinensis HOM05D007655 ORTHO05D009698 4.4e-37 159.5 331 45.3
FvH4_7g24790 Fragaria vesca HOM05D007655 ORTHO05D009698 4.4e-37 159.5 319 52.7
PGSC0003DMG400027723 Solanum tuberosum HOM05D007655 ORTHO05D009698 2.9e-36 156.8 288 62.8
FAN10G0222 Fragaria x ananassa HOM05D007655 ORTHO05D009698 3.8e-36 156.4 319 54.5
Solyc03g095960.1 Solanum lycopersicum HOM05D007655 ORTHO05D009698 6.4e-36 155.6 288 62.5
COL.COLO4_06431 Corchorus olitorius HOM05D007655 ORTHO05D009698 8.4e-36 155.2 287 62.4
Sopen03g025960 Solanum pennellii HOM05D007655 ORTHO05D009698 8.4e-36 155.2 288 62.2
Cpa.g.sc19.153 Carica papaya HOM05D007655 ORTHO05D009698 1.1e-35 154.8 331 61.6
Thecc.10G013100 Theobroma cacao HOM05D007655 ORTHO05D009698 2.4e-35 153.7 338 59.2
CAN.G1161.24 Capsicum annuum HOM05D007655 ORTHO05D009698 5.4e-35 152.5 292 43.5
HanXRQChr09g0253251 Helianthus annuus HOM05D007655 ORTHO05D009698 1.6e-34 151.0 309 41.7
Duzib106G0934 Durio zibethinus HOM05D007655 ORTHO05D009698 7.8e-34 148.7 331 62.8
Aqoxy3G03604 Aquilegia oxysepala HOM05D007655 ORTHO05D009698 3.0e-33 146.7 330 57.9
Oeu029071.1 Olea europaea HOM05D007655 ORTHO05D009698 3.0e-33 146.7 286 70.3
MSTRG.197 Avicennia marina HOM05D007655 ORTHO05D009698 3.3e-32 143.3 282 34.0
Sopen03g025950 Solanum pennellii HOM05D007655 ORTHO05D009698 1.3e-31 141.4 293 59.7
Migut.F01479 Erythranthe guttata HOM05D007655 ORTHO05D009698 4.8e-31 139.4 282 62.4
Ciclev10033792m.g Citrus clementina HOM05D007655 ORTHO05D000636 6.2e-31 139.0 284 63.0
ECA232G4997 Erigeron canadensis HOM05D007655 ORTHO05D009698 1.4e-30 137.9 305 48.5
Gorai.N006800 Gossypium raimondii HOM05D007655 ORTHO05D009698 9.0e-30 135.2 334 54.5
Gohir.D06G178400 Gossypium hirsutum HOM05D007655 ORTHO05D009698 1.2e-29 134.8 334 54.2
Sc14g0002050 Simmondsia chinensis HOM05D007655 ORTHO05D009698 1.2e-29 134.8 322 55.6
A09p48980 Brassica napus HOM05D007655 ORTHO05D009698 4.5e-29 132.9 307 47.2
BraA09t40353Z Brassica rapa HOM05D007655 ORTHO05D009698 4.5e-29 132.9 307 47.2
Ca_19338_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 4.5e-29 132.9 295 39.3
CARHR135280 Cardamine hirsuta HOM05D007655 ORTHO05D009698 5.8e-29 132.5 289 62.3
Aa31LG10G10970 Aethionema arabicum HOM05D007655 ORTHO05D009698 7.6e-29 132.1 289 60.6
C08p31340 Brassica napus HOM05D007655 ORTHO05D009698 7.6e-29 132.1 310 46.8
BolC8t50755H Brassica oleracea HOM05D007655 ORTHO05D009698 7.6e-29 132.1 310 46.8
Sp5g06510 Schrenkiella parvula HOM05D007655 ORTHO05D009698 1.3e-28 131.3 306 47.1
Lalb_Chr03g0033351 Lupinus albus HOM05D007655 ORTHO05D009698 2.9e-28 130.2 325 30.8
Carub.0004s2246 Capsella rubella HOM05D007655 ORTHO05D009698 4.9e-28 129.4 290 61.0
CARHR166100 Cardamine hirsuta HOM05D007655 ORTHO05D009698 4.9e-28 129.4 306 48.4
AT2G40240 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 6.4e-28 129.0 285 60.4
AL4G37960 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 1.4e-27 127.9 285 60.4
Lsat_1_v5_gn_9_61061 Lactuca sativa HOM05D007655 ORTHO05D009698 1.4e-27 127.9 287 64.8
AL5G37300 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 5.4e-27 125.9 307 41.0
Aa31LG5G19330 Aethionema arabicum HOM05D007655 ORTHO05D009698 7.1e-27 125.6 326 46.0
CANSAT56G4119 Cannabis sativa HOM05D007655 ORTHO05D009698 7.1e-27 125.6 286 60.5
AT3G56030 Arabidopsis thaliana HOM05D007655 ORTHO05D009698 1.2e-26 124.8 309 39.2
PGR044G0328 Punica granatum HOM05D007655 ORTHO05D009698 2.1e-26 124.0 319 45.1
Haze_17251 Corylus avellana HOM05D007655 ORTHO05D009698 3.5e-26 123.2 126 53.2
Carub.0005s2276 Capsella rubella HOM05D007655 ORTHO05D009698 6.0e-26 122.5 308 40.9
Lj2g0024512 Lotus japonicus HOM05D007655 ORTHO05D009698 7.9e-26 122.1 313 42.2
Thhalv10006093m.g Eutrema salsugineum HOM05D007655 ORTHO05D009698 5.1e-25 119.4 303 48.8
Ca_25253_v3 Cicer arietinum L. HOM05D007655 ORTHO05D009698 1.1e-24 118.2 277 34.3
CSS0030670 Camellia sinensis var. sinensis HOM05D007655 ORTHO05D009698 1.9e-24 117.5 76 80.3
Psat1g113880 Pisum sativum HOM05D007655 ORTHO05D009698 7.4e-24 115.5 319 26.6
Glyma.09G157400 Glycine max HOM05D007655 ORTHO05D009698 6.2e-23 112.5 290 45.9
Phvul.004G132400 Phaseolus vulgaris HOM05D007655 ORTHO05D009698 1.8e-22 110.9 289 40.1
TPR.G40357 Trifolium pratense HOM05D007655 ORTHO05D009698 9.0e-22 108.6 288 26.7
FAN03G2547 Fragaria x ananassa HOM05D007655 ORTHO05D009698 2.0e-21 107.5 316 48.4
Medtr6g065100 Medicago truncatula HOM05D007655 ORTHO05D009698 2.2e-20 104.0 300 40.3
SalBow5G5388 Salvia bowleyana HOM05D007655 ORTHO05D009698 3.8e-20 103.2 135 46.7
MBI15_g28821_MAGBIO Magnolia biondii HOM05D007655 ORTHO05D009698 8.4e-20 102.1 315 42.9
THA.LOC104810115 Tarenaya hassleriana HOM05D007655 ORTHO05D009698 5.5e-19 99.4 323 54.8
VMungo0464G0151 Vigna mungo HOM05D007655 ORTHO05D009698 1.6e-18 97.8 318 41.5
ATR0174G045 Amborella trichopoda HOM05D007655 ORTHO05D009698 3.5e-18 96.7 135 40.0
Peaxi162Scf00304g00006 Petunia axillaris HOM05D007655 ORTHO05D009698 7.9e-18 95.5 105 51.4
Prupe.2G253200 Prunus persica HOM05D000815 ORTHO05D000636 2.5e-16 90.5 152 39.5
arahy.Tifrunner.gnm1.ann1.L8T4NM Arachis hypogaea HOM05D007655 ORTHO05D009698 9.6e-16 88.6 132 40.9
arahy.Tifrunner.gnm1.ann1.P4Y6YZ Arachis hypogaea HOM05D000585 ORTHO05D001841 2.2e-12 77.4 127 37.8
CDE06G0331 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 2.9e-12 77.0 112 39.3
Nn2g13207 Nelumbo nucifera HOM05D007655 ORTHO05D009698 8.4e-12 75.5 67 58.2
CDE12G0438 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 1.1e-11 75.1 111 38.7
ATR0030G034 Amborella trichopoda HOM05D007655 ORTHO05D009698 3.2e-11 73.6 111 36.9
CDE04G2579 Ceratophyllum demersum HOM05D007655 ORTHO05D009698 5.5e-11 72.8 108 41.7
FAN01G0024 Fragaria x ananassa HOM05D007655 ORTHO05D009698 4.6e-10 69.7 66 56.1
Potri.008G141700 Populus trichocarpa HOM05D007655 ORTHO05D009698 5.7e-08 62.8 54 55.6
Lalb_Chr19g0131421 Lupinus albus HOM05D007655 ORTHO05D009698 2.1e-07 60.8 67 43.3


User provided reference genes

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