Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 2.0e-86 323.2 278 100.0
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 2.6e-33 146.7 178 69.1
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 4.4e-25 119.4 67 85.1
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 2.4e-23 113.6 64 78.1
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 2.9e-21 106.7 60 78.3
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 1.9e-20 104.0 59 88.1
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 5.6e-20 102.4 279 56.6
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 3.6e-19 99.8 59 83.1
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 3.6e-19 99.8 59 81.4
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 4.0e-18 96.3 59 79.7
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 5.2e-18 95.9 66 69.7
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 2.0e-17 94.0 59 78.0
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 2.6e-17 93.6 59 76.3
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 1.3e-16 91.3 59 72.9
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 2.2e-16 90.5 61 72.1
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 3.7e-16 89.7 59 72.9
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 3.7e-16 89.7 53 75.5
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 8.3e-16 88.6 53 73.6
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 8.3e-16 88.6 53 73.6
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 8.3e-16 88.6 53 73.6
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 8.3e-16 88.6 53 73.6
MD01G1124300 Malus domestica HOM05D004463 ORTHO05D004724 8.3e-16 88.6 59 72.9
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 1.4e-15 87.8 59 71.2
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 2.4e-15 87.0 59 71.2
FAN03G3339 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.4e-15 87.0 53 73.6
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 2.4e-15 87.0 59 72.9
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 7.8e-14 82.0 59 69.5
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 1.5e-12 77.8 62 62.9
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 2.5e-12 77.0 67 58.2
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 4.3e-12 76.3 51 62.7
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.6e-12 75.9 42 76.2
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 5.6e-12 75.9 55 67.3
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 5.6e-12 75.9 55 67.3
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 7.3e-12 75.5 65 50.8
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 2.1e-11 73.9 51 60.8
PGR044G0901 Punica granatum HOM05D004463 ORTHO05D004724 2.1e-11 73.9 57 63.2
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 6.2e-11 72.4 59 61.0
Sc19g0006390 Simmondsia chinensis HOM05D004463 ORTHO05D004724 3.4e-09 66.6 43 62.8
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 4.4e-09 66.2 47 63.8
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 5.8e-09 65.9 59 55.9
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 5.8e-09 65.9 59 55.9
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 5.8e-09 65.9 47 63.8
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 9.8e-09 65.1 64 57.8
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 9.8e-09 65.1 63 55.6
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 9.8e-09 65.1 65 55.4
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 1.3e-08 64.7 50 66.0
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 1.3e-08 64.7 58 56.9
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.3e-08 64.7 50 66.0
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 1.7e-08 64.3 59 57.6
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 1.7e-08 64.3 67 53.7
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 2.2e-08 63.9 58 55.2
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 2.2e-08 63.9 63 55.6
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 2.2e-08 63.9 43 65.1
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 2.2e-08 63.9 43 65.1
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.2e-08 63.9 59 55.9
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 2.9e-08 63.5 60 55.0
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 2.9e-08 63.5 44 63.6
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 2.9e-08 63.5 48 64.6
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 3.7e-08 63.2 54 59.3
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 3.7e-08 63.2 63 55.6
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 4.9e-08 62.8 43 62.8
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 4.9e-08 62.8 43 62.8
EL10Ac7g16555 Beta vulgaris HOM05D031029 ORTHO05D004724 4.9e-08 62.8 56 51.8
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 4.9e-08 62.8 43 62.8
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 4.9e-08 62.8 69 52.2
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 4.9e-08 62.8 43 62.8
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 4.9e-08 62.8 43 62.8
vmacro23491 Vaccinium macrocarpon HOM05D004463 ORTHO05D004724 4.9e-08 62.8 26 92.3
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 4.9e-08 62.8 43 62.8
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 4.9e-08 62.8 50 62.0
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 6.4e-08 62.4 43 62.8
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 6.4e-08 62.4 43 62.8
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 6.4e-08 62.4 43 65.1
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 6.4e-08 62.4 43 62.8
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 6.4e-08 62.4 43 62.8
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 6.4e-08 62.4 64 54.7
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 6.4e-08 62.4 59 55.9
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 6.4e-08 62.4 59 54.2
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 6.4e-08 62.4 44 61.4
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 6.4e-08 62.4 67 52.2
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 6.4e-08 62.4 43 62.8
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 6.4e-08 62.4 59 55.9
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 8.3e-08 62.0 44 63.6
Actinidia13869 Actinidia chinensis HOM05D000283 ORTHO05D000358 8.3e-08 62.0 29 86.2
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 8.3e-08 62.0 59 52.5
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 8.3e-08 62.0 43 65.1
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 1.1e-07 61.6 52 61.5
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 1.1e-07 61.6 52 61.5
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 1.1e-07 61.6 43 62.8
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 1.1e-07 61.6 64 53.1
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 1.1e-07 61.6 50 64.0
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 1.4e-07 61.2 43 62.8
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 1.4e-07 61.2 60 53.3
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 1.4e-07 61.2 43 65.1
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 1.4e-07 61.2 65 56.9
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 1.4e-07 61.2 55 56.4
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 1.9e-07 60.8 62 51.6
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 1.9e-07 60.8 61 54.1
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 1.9e-07 60.8 43 60.5
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 1.9e-07 60.8 43 62.8
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.4e-07 60.5 43 65.1
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 3.2e-07 60.1 59 59.3
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 3.2e-07 60.1 60 53.3
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 4.1e-07 59.7 41 65.9
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 4.1e-07 59.7 63 50.8
Ah.08g211810 Amaranthus hybridus HOM05D031029 ORTHO05D004724 7.1e-07 58.9 56 51.8
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 7.1e-07 58.9 43 58.1
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 7.1e-07 58.9 43 58.1
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 7.1e-07 58.9 51 56.9
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 9.2e-07 58.5 55 52.7
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 9.2e-07 58.5 43 58.1
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 9.2e-07 58.5 43 58.1
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 9.2e-07 58.5 61 52.5
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 1.2e-06 58.2 50 60.0
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 1.2e-06 58.2 43 58.1
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 1.2e-06 58.2 47 66.0
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 1.2e-06 58.2 43 58.1
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 1.6e-06 57.8 43 58.1
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 1.6e-06 57.8 43 58.1
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 2.1e-06 57.4 52 57.7
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 2.1e-06 57.4 41 63.4
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 2.1e-06 57.4 43 58.1
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 3.5e-06 56.6 49 61.2
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 3.5e-06 56.6 49 61.2
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 3.5e-06 56.6 50 56.0
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 4.6e-06 56.2 51 58.8
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 4.6e-06 56.2 67 50.7
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 4.6e-06 56.2 67 49.3
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 4.6e-06 56.2 45 55.6
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 4.6e-06 56.2 53 56.6
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 6.0e-06 55.8 57 54.4
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 6.0e-06 55.8 72 44.4
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 6.0e-06 55.8 47 63.8
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 6.0e-06 55.8 46 54.3
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 6.0e-06 55.8 46 54.3
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 7.8e-06 55.5 50 56.0


User provided reference genes

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