Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0161200 Rhododendron simsii HOM05D001872 ORTHO05D001859 4.4e-46 187.6 92 100.0
Rhsim09G0161100 Rhododendron simsii HOM05D001872 ORTHO05D001859 3.2e-17 91.7 43 95.3
Rhsim09G0158400 Rhododendron simsii HOM05D001872 ORTHO05D001859 1.1e-12 76.6 38 89.5
Rhsim09G0160000 Rhododendron simsii HOM05D000292 ORTHO05D000172 1.8e-12 75.9 38 89.5
Cc02_g08510 Coffea canephora HOM05D001872 ORTHO05D001859 3.8e-10 68.2 38 76.3
MSTRG.8236 Avicennia marina HOM05D001872 ORTHO05D001859 1.1e-09 66.6 38 76.3
Dinv31405 Davidia involucrata HOM05D001872 ORTHO05D001859 1.5e-09 66.2 38 76.3
TAR369G0004 Trochodendron aralioides HOM05D001872 ORTHO05D001859 3.3e-09 65.1 38 71.1
AT1G19550 Arabidopsis thaliana HOM05D001872 ORTHO05D001859 4.3e-09 64.7 37 73.0
AT1G19570 Arabidopsis thaliana HOM05D001872 ORTHO05D001859 4.3e-09 64.7 37 73.0
CSS0046087 Camellia sinensis var. sinensis HOM05D001872 ORTHO05D001859 4.3e-09 64.7 38 71.1
Lsat_1_v5_gn_8_18380 Lactuca sativa HOM05D001872 ORTHO05D001859 4.3e-09 64.7 37 75.7
Atru.chr12.566 Acer truncatum HOM05D001872 ORTHO05D001859 5.6e-09 64.3 59 54.2
Lj5g0001191 Lotus japonicus HOM05D001872 ORTHO05D001859 5.6e-09 64.3 38 71.1
TAR636G1680 Trochodendron aralioides HOM05D001872 ORTHO05D001859 5.6e-09 64.3 37 73.0
Migut.F01517 Erythranthe guttata HOM05D001872 ORTHO05D001859 7.3e-09 63.9 38 68.4
HanXRQChr08g0220001 Helianthus annuus HOM05D001872 ORTHO05D001859 7.3e-09 63.9 37 73.0
TPR.G13994 Trifolium pratense HOM05D001872 ORTHO05D001859 7.3e-09 63.9 38 73.7
AL7G45240 Arabidopsis lyrata HOM05D001872 ORTHO05D001859 9.5e-09 63.5 38 73.7
Dinv25956 Davidia involucrata HOM05D001872 ORTHO05D001859 9.5e-09 63.5 38 71.1
HanXRQChr12g0371001 Helianthus annuus HOM05D001872 ORTHO05D001859 9.5e-09 63.5 37 73.0
PSO339G0199 Papaver somniferum HOM05D001872 ORTHO05D001859 9.5e-09 63.5 38 68.4
PSO339G1027 Papaver somniferum HOM05D001872 ORTHO05D001859 9.5e-09 63.5 38 68.4
PSO384G3366 Papaver somniferum HOM05D001872 ORTHO05D001859 9.5e-09 63.5 38 68.4
unitig_749.g14013 Utricularia gibba HOM05D000269 ORTHO05D005780 9.5e-09 63.5 38 73.7
CSS0023136 Camellia sinensis var. sinensis HOM05D001872 ORTHO05D001859 1.2e-08 63.2 38 71.1
Oeu050657.1 Olea europaea HOM05D001872 ORTHO05D001859 1.2e-08 63.2 38 68.4
Potri.008G049300 Populus trichocarpa HOM05D001872 ORTHO05D001859 1.2e-08 63.2 62 53.2
Rhsim03G0128200 Rhododendron simsii HOM05D001872 ORTHO05D001859 1.2e-08 63.2 38 65.8
Aa31LG4G5510 Aethionema arabicum HOM05D001872 ORTHO05D001859 1.6e-08 62.8 37 75.7
Glyma.10G291100 Glycine max HOM05D001872 ORTHO05D001859 1.6e-08 62.8 38 71.1
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 1.6e-08 62.8 38 68.4
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 1.6e-08 62.8 38 68.4
Psat3g101720 Pisum sativum HOM05D001872 ORTHO05D001859 1.6e-08 62.8 38 71.1
TWI15G1031 Tripterygium wilfordii HOM05D001872 ORTHO05D001859 1.6e-08 62.8 38 65.8
Psat6g237000 Pisum sativum HOM05D001872 ORTHO05D001859 2.1e-08 62.4 38 68.4
Nitab4.5_0004055g0020 Nicotiana tabacum HOM05D001872 ORTHO05D001859 2.8e-08 62.0 38 65.8
Peaxi162Scf00015g02219 Petunia axillaris HOM05D001872 ORTHO05D001859 2.8e-08 62.0 38 65.8
Potri.010G211600 Populus trichocarpa HOM05D001872 ORTHO05D001859 2.8e-08 62.0 38 71.1
Hund19998 Selenicereus undatus HOM05D001872 ORTHO05D001859 2.8e-08 62.0 37 70.3
C08p19510 Brassica napus HOM05D001872 ORTHO05D001859 3.6e-08 61.6 36 75.0
BolC8t49574H Brassica oleracea HOM05D001872 ORTHO05D001859 3.6e-08 61.6 36 75.0
CARHR020120 Cardamine hirsuta HOM05D001872 ORTHO05D001859 3.6e-08 61.6 37 70.3
Duzib106G0266 Durio zibethinus HOM05D001872 ORTHO05D001859 3.6e-08 61.6 37 67.6
Hma1.2p1_0402F.1_g145080 Hydrangea macrophylla HOM05D001872 ORTHO05D001859 3.6e-08 61.6 38 68.4
PGR142G2200 Punica granatum HOM05D001872 ORTHO05D001859 3.6e-08 61.6 38 65.8
Sabra10G0163600 Salix brachista HOM05D001872 ORTHO05D001859 3.6e-08 61.6 37 73.0
vmacro07140 Vaccinium macrocarpon HOM05D001872 ORTHO05D001859 3.6e-08 61.6 37 67.6
GSVIVG01005966001 Vitis vinifera HOM05D001872 ORTHO05D001859 3.6e-08 61.6 38 65.8
BcaB03g12910 Brassica carinata HOM05D001872 ORTHO05D001859 4.7e-08 61.2 36 72.2
A08p29770 Brassica napus HOM05D001872 ORTHO05D001859 4.7e-08 61.2 36 72.2
CAN.G1339.4 Capsicum annuum HOM05D001872 ORTHO05D001859 4.7e-08 61.2 38 63.2
Duzib128G0283 Durio zibethinus HOM05D001872 ORTHO05D001859 4.7e-08 61.2 87 40.2
Eucgr.G02764 Eucalyptus grandis HOM05D001872 ORTHO05D001859 4.7e-08 61.2 38 65.8
Solyc05g054760.4 Solanum lycopersicum HOM05D001872 ORTHO05D001859 4.7e-08 61.2 38 63.2
PGSC0003DMG400023416 Solanum tuberosum HOM05D001872 ORTHO05D001859 4.7e-08 61.2 38 63.2
Aa31LG7G4190 Aethionema arabicum HOM05D001872 ORTHO05D001859 6.1e-08 60.8 37 70.3
arahy.Tifrunner.gnm1.ann1.PCJ45Z Arachis hypogaea HOM05D001872 ORTHO05D001859 6.1e-08 60.8 38 65.8
arahy.Tifrunner.gnm1.ann1.R65TT7 Arachis hypogaea HOM05D001872 ORTHO05D001859 6.1e-08 60.8 38 65.8
CAN.G223.21 Capsicum annuum HOM05D001872 ORTHO05D001859 6.1e-08 60.8 39 59.0
Ca_11302_v3 Cicer arietinum L. HOM05D001872 ORTHO05D001859 6.1e-08 60.8 38 71.1
Thhalv10008761m.g Eutrema salsugineum HOM05D001872 ORTHO05D001859 6.1e-08 60.8 37 70.3
Gohir.D10G219500 Gossypium hirsutum HOM05D001872 ORTHO05D001859 6.1e-08 60.8 37 67.6
Gorai.011G246200 Gossypium raimondii HOM05D001872 ORTHO05D001859 6.1e-08 60.8 37 67.6
HanXRQChr12g0367941 Helianthus annuus HOM05D001872 ORTHO05D001859 6.1e-08 60.8 37 70.3
SalBow6G6064 Salvia bowleyana HOM05D001872 ORTHO05D001859 6.1e-08 60.8 37 70.3
Hund22418 Selenicereus undatus HOM05D001872 ORTHO05D001859 6.1e-08 60.8 37 70.3
TAR633G1614 Trochodendron aralioides HOM05D001872 ORTHO05D001859 6.1e-08 60.8 38 71.1
Actinidia29207 Actinidia chinensis HOM05D001872 ORTHO05D001859 8.0e-08 60.5 38 63.2
ATR0033G034 Amborella trichopoda HOM05D001872 ORTHO05D001859 8.0e-08 60.5 38 65.8
Glyma.20G240300 Glycine max HOM05D001872 ORTHO05D001859 8.0e-08 60.5 38 68.4
Lalb_Chr02g0144001 Lupinus albus HOM05D001872 ORTHO05D001859 8.0e-08 60.5 38 65.8
Sc07g0006680 Simmondsia chinensis HOM05D001872 ORTHO05D001859 8.0e-08 60.5 38 68.4
AL1G32300 Arabidopsis lyrata HOM05D001872 ORTHO05D001859 1.0e-07 60.1 37 67.6
Cpa.g.sc1.329 Carica papaya HOM05D001872 ORTHO05D001859 1.0e-07 60.1 38 65.8
Manes.10G037200 Manihot esculenta HOM05D001872 ORTHO05D001859 1.0e-07 60.1 38 63.2
AL2G35200 Arabidopsis lyrata HOM05D001872 ORTHO05D001859 1.4e-07 59.7 37 67.6
Ciclev10032931m.g Citrus clementina HOM05D001872 ORTHO05D001859 1.4e-07 59.7 37 64.9
Nitab4.5_0000914g0290 Nicotiana tabacum HOM05D001872 ORTHO05D001859 1.4e-07 59.7 38 63.2
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 1.4e-07 59.7 38 63.2
Phvul.007G009800 Phaseolus vulgaris HOM05D001872 ORTHO05D001859 1.4e-07 59.7 38 65.8
TPR.G14055 Trifolium pratense HOM05D001872 ORTHO05D001859 1.4e-07 59.7 37 67.6
TWI38G2404 Tripterygium wilfordii HOM05D001872 ORTHO05D001859 1.4e-07 59.7 38 65.8
CARHR068610 Cardamine hirsuta HOM05D001872 ORTHO05D001859 1.8e-07 59.3 37 64.9
Gohir.A10G211200 Gossypium hirsutum HOM05D001872 ORTHO05D001859 1.8e-07 59.3 37 64.9
Medtr1g115500 Medicago truncatula HOM05D001872 ORTHO05D001859 1.8e-07 59.3 38 71.1
AT1G75270 Arabidopsis thaliana HOM05D001872 ORTHO05D001859 2.3e-07 58.9 37 67.6
Cfa001543 Carpinus fangiana HOM05D001872 ORTHO05D001859 2.3e-07 58.9 38 63.2
Haze_16990 Corylus avellana HOM05D001872 ORTHO05D001859 2.3e-07 58.9 38 63.2
ECA233G1507 Erigeron canadensis HOM05D001872 ORTHO05D001859 2.3e-07 58.9 86 41.9
Migut.K00896 Erythranthe guttata HOM05D001872 ORTHO05D001859 2.3e-07 58.9 37 64.9
Nn2g12864 Nelumbo nucifera HOM05D001872 ORTHO05D001859 2.3e-07 58.9 38 68.4
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 2.3e-07 58.9 38 60.5
Sc07g0006690 Simmondsia chinensis HOM05D001872 ORTHO05D001859 2.3e-07 58.9 38 65.8
BcaB07g31978 Brassica carinata HOM05D001872 ORTHO05D001859 3.0e-07 58.5 37 64.9
BcaC05g25834 Brassica carinata HOM05D001872 ORTHO05D001859 3.0e-07 58.5 37 64.9
A06p15730 Brassica napus HOM05D001872 ORTHO05D001859 3.0e-07 58.5 37 64.9
C05p18050 Brassica napus HOM05D001872 ORTHO05D001859 3.0e-07 58.5 37 64.9
BolC5t30513H Brassica oleracea HOM05D001872 ORTHO05D001859 3.0e-07 58.5 37 64.9
BraA06t24683Z Brassica rapa HOM05D001872 ORTHO05D001859 3.0e-07 58.5 37 64.9
Carub.0001s1912 Capsella rubella HOM05D001872 ORTHO05D001859 3.0e-07 58.5 36 66.7
CiPaw.01G281600 Carya illinoinensis HOM05D001872 ORTHO05D001859 3.0e-07 58.5 38 63.2
Eucgr.G02889 Eucalyptus grandis HOM05D001872 ORTHO05D001859 3.0e-07 58.5 38 60.5
Sopen05g033230 Solanum pennellii HOM05D001872 ORTHO05D001859 3.0e-07 58.5 38 60.5
CANSAT25G2271 Cannabis sativa HOM05D001872 ORTHO05D001859 4.0e-07 58.2 83 41.0
CiPaw.01G281700 Carya illinoinensis HOM05D001872 ORTHO05D001859 4.0e-07 58.2 38 65.8
Gohir.A05G351200 Gossypium hirsutum HOM05D001872 ORTHO05D001859 4.0e-07 58.2 37 64.9
Gohir.D04G061500 Gossypium hirsutum HOM05D001872 ORTHO05D001859 4.0e-07 58.2 37 64.9
Gorai.012G068600 Gossypium raimondii HOM05D001872 ORTHO05D001859 4.0e-07 58.2 37 64.9
PSO339G4693 Papaver somniferum HOM05D001872 ORTHO05D001859 4.0e-07 58.2 38 60.5
PSO384G1978 Papaver somniferum HOM05D001872 ORTHO05D001859 4.0e-07 58.2 38 60.5
Sp1g17420 Schrenkiella parvula HOM05D001872 ORTHO05D001859 4.0e-07 58.2 39 64.1
Solyc11g039930.2 Solanum lycopersicum HOM05D001872 ORTHO05D001859 4.0e-07 58.2 39 56.4
THA.LOC104827305 Tarenaya hassleriana HOM05D001872 ORTHO05D001859 4.0e-07 58.2 37 64.9
AagrBONN_evm.TU.Sc2ySwM_117.162 Anthoceros agrestis HOM05D001872 ORTHO05D001859 5.2e-07 57.8 37 67.6
Haze_14249 Corylus avellana HOM05D001872 ORTHO05D001859 5.2e-07 57.8 37 62.2
Haze_14254 Corylus avellana HOM05D001872 ORTHO05D001859 5.2e-07 57.8 37 62.2
Oeu011131.4 Olea europaea HOM05D001872 ORTHO05D001859 5.2e-07 57.8 38 60.5
QL02p057879 Quercus lobata HOM05D001872 ORTHO05D001859 5.2e-07 57.8 37 62.2
Thecc.10G058100 Theobroma cacao HOM05D001872 ORTHO05D001859 5.2e-07 57.8 75 44.0
Carub.0002s2209 Capsella rubella HOM05D001872 ORTHO05D001859 6.8e-07 57.4 35 68.6
Duzib114G0234 Durio zibethinus HOM05D001872 ORTHO05D001859 6.8e-07 57.4 37 62.2
Psat3g101680 Pisum sativum HOM05D001872 ORTHO05D001859 6.8e-07 57.4 40 65.0
Solyc06g075520.3 Solanum lycopersicum HOM05D001872 ORTHO05D001859 6.8e-07 57.4 37 62.2
Sopen01g014300 Solanum pennellii HOM05D000047 ORTHO05D000589 6.8e-07 57.4 37 62.2
CDE07G0505 Ceratophyllum demersum HOM05D001872 ORTHO05D001859 8.9e-07 57.0 38 60.5
Lalb_Chr21g0307311 Lupinus albus HOM05D001872 ORTHO05D001859 8.9e-07 57.0 37 62.2
Aqoxy4G03053 Aquilegia oxysepala HOM05D001872 ORTHO05D001859 1.2e-06 56.6 38 60.5
EL10Ac2g03463 Beta vulgaris HOM05D001872 ORTHO05D001859 1.2e-06 56.6 37 64.9
Lsat_1_v5_gn_8_18400 Lactuca sativa HOM05D001872 ORTHO05D001859 1.2e-06 56.6 37 67.6
Lj8A90G50 Lonicera japonica HOM05D001872 ORTHO05D001859 1.2e-06 56.6 38 60.5
SMO201G0198 Selaginella moellendorffii HOM05D001872 ORTHO05D001859 1.2e-06 56.6 88 38.6
Sabra08G0035400 Salix brachista HOM05D001872 ORTHO05D001859 1.5e-06 56.2 37 62.2
SalBow5G0455 Salvia bowleyana HOM05D001872 ORTHO05D001859 1.5e-06 56.2 37 59.5
SEGI_11009 Sequoiadendron giganteum HOM05D001872 ORTHO05D001859 1.5e-06 56.2 36 63.9
A02p19840 Brassica napus HOM05D001872 ORTHO05D001859 2.0e-06 55.8 35 65.7
Cfa007823 Carpinus fangiana HOM05D001872 ORTHO05D001859 2.0e-06 55.8 37 59.5
SGA_v2.0_scaffold45G17188 Striga asiatica HOM05D001872 ORTHO05D001859 2.0e-06 55.8 37 59.5
BraA02t07017Z Brassica rapa HOM05D001872 ORTHO05D001859 2.6e-06 55.5 35 62.9
AUR62022530 Chenopodium quinoa HOM05D001872 ORTHO05D001859 2.6e-06 55.5 38 60.5
AUR62035961 Chenopodium quinoa HOM05D001872 ORTHO05D001859 2.6e-06 55.5 38 60.5
RcHm_v2.0_Chr3g0493051 Rosa chinensis HOM05D001872 ORTHO05D001859 2.6e-06 55.5 37 56.8
COL.COLO4_10916 Corchorus olitorius HOM05D001872 ORTHO05D001859 3.4e-06 55.1 37 62.2
COL.COLO4_10917 Corchorus olitorius HOM05D001872 ORTHO05D001859 3.4e-06 55.1 82 39.0
Manes.01G117300 Manihot esculenta HOM05D001872 ORTHO05D001859 3.4e-06 55.1 37 59.5
Nitab4.5_0004294g0060 Nicotiana tabacum HOM05D001872 ORTHO05D001859 3.4e-06 55.1 37 56.8
Os05g0116100 Oryza sativa ssp. japonica HOM05D001872 ORTHO05D001859 3.4e-06 55.1 35 65.7
RcHm_v2.0_Chr1g0365431 Rosa chinensis HOM05D001872 ORTHO05D001859 3.4e-06 55.1 38 57.9
Sopen10g017090 Solanum pennellii HOM05D001872 ORTHO05D001859 3.4e-06 55.1 38 63.2
VMungo0720G0479 Vigna mungo HOM05D001872 ORTHO05D001859 3.4e-06 55.1 38 60.5
Ah.16g107630 Amaranthus hybridus HOM05D001872 ORTHO05D001859 4.4e-06 54.7 37 62.2
Thhalv10019864m.g Eutrema salsugineum HOM05D001872 ORTHO05D001859 4.4e-06 54.7 37 64.9
Peaxi162Scf00305g00128 Petunia axillaris HOM05D001872 ORTHO05D001859 4.4e-06 54.7 37 56.8
Zm00001eb355540 Zea mays HOM05D001872 ORTHO05D001859 4.4e-06 54.7 37 59.5
CANSAT64G0877 Cannabis sativa HOM05D001872 ORTHO05D001859 5.7e-06 54.3 38 60.5
Cc07_g13580 Coffea canephora HOM05D001872 ORTHO05D001859 5.7e-06 54.3 37 54.1
FAN28G2301 Fragaria x ananassa HOM05D001872 ORTHO05D001859 5.7e-06 54.3 50 50.0
Hma1.2p1_0524F.1_g172320 Hydrangea macrophylla HOM05D001872 ORTHO05D001859 5.7e-06 54.3 37 56.8
Hma1.2p1_1840F.1_g304910 Hydrangea macrophylla HOM05D001872 ORTHO05D001859 5.7e-06 54.3 37 56.8
Lj1A931T51 Lonicera japonica HOM05D001872 ORTHO05D001859 5.7e-06 54.3 38 60.5
Sp5g30440 Schrenkiella parvula HOM05D001872 ORTHO05D001859 5.7e-06 54.3 35 62.9
Solyc05g013950.1 Solanum lycopersicum HOM05D001872 ORTHO05D001859 5.7e-06 54.3 91 37.4
PGSC0003DMG400015691 Solanum tuberosum HOM05D001872 ORTHO05D001859 5.7e-06 54.3 37 56.8
TPR.G37400 Trifolium pratense HOM05D001872 ORTHO05D001859 5.7e-06 54.3 37 62.2
Zm00001eb266260 Zea mays HOM05D001872 ORTHO05D001859 5.7e-06 54.3 37 59.5
Zm00001eb279790 Zea mays HOM05D001872 ORTHO05D001859 5.7e-06 54.3 37 54.1
Actinidia17216 Actinidia chinensis HOM05D001872 ORTHO05D001859 7.5e-06 53.9 37 54.1
BcaB03g14439 Brassica carinata HOM05D001872 ORTHO05D001859 7.5e-06 53.9 37 59.5
BcaC03g15558 Brassica carinata HOM05D001872 ORTHO05D001859 7.5e-06 53.9 35 62.9
C02p32460 Brassica napus HOM05D001872 ORTHO05D001859 7.5e-06 53.9 35 62.9
BolC2t09278H Brassica oleracea HOM05D001872 ORTHO05D001859 7.5e-06 53.9 35 62.9
FvH4_1g28700 Fragaria vesca HOM05D001872 ORTHO05D001859 7.5e-06 53.9 50 50.0
FAN19G2107 Fragaria x ananassa HOM05D001872 ORTHO05D001859 7.5e-06 53.9 50 50.0
Glyma.11G216400 Glycine max HOM05D001872 ORTHO05D001859 7.5e-06 53.9 38 55.3
MD17G1260600 Malus domestica HOM05D001872 ORTHO05D001859 7.5e-06 53.9 37 59.5
PGR042G2730 Punica granatum HOM05D001872 ORTHO05D001859 7.5e-06 53.9 37 54.1
Ca_19003_v3 Cicer arietinum L. HOM05D001872 ORTHO05D001859 9.8e-06 53.5 37 59.5
HanXRQChr14g0444501 Helianthus annuus HOM05D001872 ORTHO05D001859 9.8e-06 53.5 37 54.1
Prupe.3G162300 Prunus persica HOM05D001872 ORTHO05D001859 9.8e-06 53.5 37 56.8


User provided reference genes

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