Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 2.1e-294 1015.0 519 100.0
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 6.4e-219 764.2 557 75.0
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 1.1e-202 710.3 516 73.8
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 3.6e-198 695.3 520 71.7
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.7e-192 676.4 520 70.8
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.3e-192 676.0 518 69.9
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 5.1e-192 674.9 520 69.8
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 7.3e-191 671.0 516 70.3
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 8.1e-190 667.5 528 68.9
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.4e-189 666.8 516 69.8
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 1.4e-189 666.8 520 69.0
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 1.8e-189 666.4 517 69.2
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 2.4e-189 666.0 521 69.1
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 3.1e-189 665.6 519 68.4
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 4.0e-189 665.2 516 69.4
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 1.5e-188 663.3 516 68.0
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 1.5e-188 663.3 519 69.0
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 1.5e-188 663.3 519 68.4
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 2.6e-188 662.5 520 68.5
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 2.6e-188 662.5 519 68.4
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 1.7e-187 659.8 504 70.4
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 5.4e-186 654.8 504 70.4
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 2.7e-185 652.5 511 68.7
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.0e-184 650.6 517 68.3
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 5.1e-184 648.3 515 67.0
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 5.1e-184 648.3 515 68.2
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 6.6e-184 647.9 511 67.5
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.9e-183 646.4 517 68.1
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 1.9e-183 646.4 515 67.0
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.6e-183 644.8 513 67.3
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 9.6e-183 644.0 520 67.3
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 9.6e-183 644.0 519 66.9
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 9.6e-183 644.0 516 68.2
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 1.6e-182 643.3 514 67.1
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 1.6e-182 643.3 513 67.6
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 2.1e-182 642.9 513 67.4
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 6.2e-182 641.3 533 65.7
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.2e-182 641.3 513 66.9
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 8.1e-182 641.0 515 66.4
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 8.1e-182 641.0 515 66.6
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 8.1e-182 641.0 515 66.6
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 1.1e-181 640.6 507 69.0
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.4e-181 640.2 519 66.7
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 1.8e-181 639.8 516 66.7
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 3.1e-181 639.0 516 67.4
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 1.5e-180 636.7 512 67.8
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 1.5e-180 636.7 521 66.8
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 2.0e-180 636.3 515 66.8
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 9.9e-180 634.0 515 66.6
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 9.9e-180 634.0 516 67.2
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 3.8e-179 632.1 523 65.8
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 4.9e-179 631.7 470 70.0
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 6.4e-179 631.3 504 68.1
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 8.4e-179 630.9 517 66.2
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 8.4e-179 630.9 517 66.2
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 1.9e-178 629.8 513 67.3
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 2.4e-178 629.4 507 66.9
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 7.1e-178 627.9 520 65.2
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.2e-177 627.1 506 67.2
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 1.2e-177 627.1 510 66.3
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 2.1e-177 626.3 508 66.3
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 4.6e-177 625.2 516 65.9
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 6.0e-177 624.8 506 67.0
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 6.0e-177 624.8 494 66.8
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 7.9e-177 624.4 518 66.0
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 7.9e-177 624.4 494 66.8
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 1.0e-176 624.0 507 65.5
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 1.0e-176 624.0 508 66.7
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.7e-176 623.2 511 66.7
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 2.3e-176 622.9 525 65.3
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 2.3e-176 622.9 515 65.4
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 2.3e-176 622.9 516 65.5
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 3.0e-176 622.5 513 64.9
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 3.0e-176 622.5 514 65.8
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 3.9e-176 622.1 504 66.1
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 3.9e-176 622.1 513 64.9
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 3.9e-176 622.1 513 64.9
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 3.9e-176 622.1 513 64.9
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 3.9e-176 622.1 512 65.6
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 5.1e-176 621.7 514 65.2
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 6.6e-176 621.3 513 65.1
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 6.6e-176 621.3 507 66.9
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.6e-176 621.3 506 66.6
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.6e-176 621.3 506 66.6
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 8.7e-176 620.9 513 64.9
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 8.7e-176 620.9 513 64.9
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 8.7e-176 620.9 506 65.8
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 8.7e-176 620.9 513 65.9
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 1.1e-175 620.5 507 65.5
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 1.5e-175 620.2 513 64.9
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 1.9e-175 619.8 514 65.6
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 1.9e-175 619.8 507 65.5
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 1.9e-175 619.8 507 65.5
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 1.9e-175 619.8 504 65.9
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 1.9e-175 619.8 516 66.3
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 1.9e-175 619.8 516 66.3
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 2.5e-175 619.4 516 65.9
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 2.5e-175 619.4 513 65.1
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 2.5e-175 619.4 513 64.9
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 4.3e-175 618.6 520 64.4
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 4.3e-175 618.6 507 65.3
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 2.8e-174 615.9 518 64.7
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 6.2e-174 614.8 518 65.4
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 1.8e-173 613.2 506 65.2
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.4e-173 612.8 515 64.1
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 6.9e-173 611.3 513 63.9
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 1.2e-172 610.5 506 65.0
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.3e-171 607.1 515 63.3
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 1.3e-171 607.1 568 60.7
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 1.3e-171 607.1 513 63.9
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 2.2e-171 606.3 508 65.6
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 3.8e-171 605.5 513 63.5
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 1.1e-170 604.0 518 64.1
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 1.1e-170 604.0 506 63.8
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 1.1e-170 604.0 506 64.2
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 9.3e-170 600.9 513 63.4
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 3.9e-168 595.5 508 63.6
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.1e-168 595.1 545 61.7
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 5.6e-167 591.7 512 62.7
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 4.8e-166 588.6 519 62.8
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.2e-166 588.2 506 64.4
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 8.1e-166 587.8 463 65.7
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 3.1e-165 585.9 518 62.0
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 1.5e-164 583.6 508 63.8
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 1.7e-163 580.1 472 63.8
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 2.2e-163 579.7 491 62.9
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 4.2e-162 575.5 482 64.3
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 1.2e-161 573.9 466 65.2
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 6.0e-161 571.6 509 62.5
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 1.1e-159 567.4 493 62.5
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.1e-159 567.4 505 61.2
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 9.6e-159 564.3 504 62.3
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 7.9e-153 544.7 361 76.7
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 1.5e-151 540.4 361 76.7
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 5.7e-151 538.5 432 67.6
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 2.8e-150 536.2 420 66.7
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 3.7e-150 535.8 429 66.9
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 8.5e-147 524.6 428 67.8
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 2.5e-146 523.1 414 67.6
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 1.1e-143 514.2 339 76.7
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 1.9e-138 496.9 501 56.1
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 1.1e-135 487.6 469 56.5
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 2.2e-131 473.4 454 56.8
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 3.8e-131 472.6 453 57.0
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 6.5e-131 471.9 508 55.3
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 1.6e-129 467.2 426 60.6
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 1.8e-128 463.8 452 57.5
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 4.4e-127 459.1 260 85.0
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 1.3e-123 447.6 346 66.5
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 1.4e-120 437.6 291 74.9
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 3.0e-112 409.8 304 70.1
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 3.1e-109 399.8 348 63.2
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 1.4e-93 347.8 231 78.4
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 3.9e-91 339.7 312 60.9
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.2e-89 334.7 242 70.7
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 9.2e-77 292.0 269 60.2
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.4e-71 273.5 272 56.6
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 2.9e-70 270.4 444 39.2
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 6.4e-70 269.2 434 40.8
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 4.6e-68 263.1 154 81.2
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 9.9e-63 245.4 186 65.6
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 9.9e-63 245.4 186 65.6
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 2.1e-57 227.6 220 60.9
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 2.8e-49 200.7 225 51.1
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.5e-45 187.6 323 42.1
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 1.7e-38 164.9 99 81.8
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 2.5e-37 161.0 153 61.4
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 8.2e-33 146.0 220 48.6
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.4e-27 128.6 293 36.9
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 1.8e-24 118.2 82 73.2
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 3.8e-22 110.5 60 90.0
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 1.0e-19 102.4 135 51.1
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 1.1e-18 99.0 82 65.9
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 7.4e-18 96.3 59 81.4
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 7.4e-18 96.3 59 81.4
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 1.4e-16 92.0 75 66.7
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 7.7e-15 86.3 46 87.0
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.2e-14 84.7 90 51.1
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 3.8e-14 84.0 45 86.7
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 5.0e-14 83.6 47 87.2
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 1.3e-09 68.9 44 72.7
MBI09_g06128_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 3.5e-07 60.8 43 62.8


User provided reference genes

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