Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0151900 Rhododendron simsii HOM05D008287 ORTHO05D010110 9.9e-92 340.1 173 100.0
Actinidia38852 Actinidia chinensis HOM05D008287 ORTHO05D010110 3.8e-19 99.0 90 58.9
Hma1.2p1_0063F.1_g034480 Hydrangea macrophylla HOM05D008287 ORTHO05D010110 9.4e-18 94.4 91 57.1
Nn2g10792 Nelumbo nucifera HOM05D008287 ORTHO05D010110 7.5e-15 84.7 96 55.2
Sabra10G0172000 Salix brachista HOM05D008287 ORTHO05D010110 7.5e-15 84.7 98 53.1
MSTRG.9186 Avicennia marina HOM05D008287 ORTHO05D010110 9.8e-15 84.3 94 51.1
Duzib114G0252 Durio zibethinus HOM05D008287 ORTHO05D010110 9.8e-15 84.3 90 50.0
Manes.10G045900 Manihot esculenta HOM05D008287 ORTHO05D010110 3.7e-14 82.4 90 52.2
Migut.F02005 Erythranthe guttata HOM05D008287 ORTHO05D010110 6.3e-14 81.6 90 51.1
Atru.chr12.751 Acer truncatum HOM05D008287 ORTHO05D010110 8.3e-14 81.3 90 51.1
Sc09g0006380 Simmondsia chinensis HOM05D008287 ORTHO05D010110 1.1e-13 80.9 101 52.5
TAR629G1172 Trochodendron aralioides HOM05D008287 ORTHO05D010110 2.4e-13 79.7 103 51.5
ClCG05G021010 Citrullus lanatus HOM05D008287 ORTHO05D010110 5.4e-13 78.6 98 49.0
vmacro04873 Vaccinium macrocarpon HOM05D008287 ORTHO05D010110 5.4e-13 78.6 62 71.0
Glyma.16G154900 Glycine max HOM05D008287 ORTHO05D010110 7.0e-13 78.2 90 44.4
Atru.chr12.776 Acer truncatum HOM05D008287 ORTHO05D010110 1.2e-12 77.4 96 52.1
Thecc.10G073600 Theobroma cacao HOM05D008287 ORTHO05D010110 2.0e-12 76.6 96 46.9
Gohir.D13G023100 Gossypium hirsutum HOM05D008287 ORTHO05D010110 4.5e-12 75.5 90 44.4
Phvul.004G082500 Phaseolus vulgaris HOM05D008287 ORTHO05D010110 4.5e-12 75.5 91 45.1
CiPaw.01G272900 Carya illinoinensis HOM05D008287 ORTHO05D010110 7.7e-12 74.7 97 47.4
unitig_899.g14438 Utricularia gibba HOM05D008287 ORTHO05D010110 7.7e-12 74.7 90 46.7
Glyma.02G073500 Glycine max HOM05D008287 ORTHO05D010110 1.0e-11 74.3 91 42.9
Solyc04g049407.1 Solanum lycopersicum HOM05D008287 ORTHO05D010110 1.0e-11 74.3 96 49.0
Prupe.2G213800 Prunus persica HOM05D008287 ORTHO05D010110 2.2e-11 73.2 92 44.6
Sopen04g019400 Solanum pennellii HOM05D008287 ORTHO05D010110 2.2e-11 73.2 90 44.4
Gohir.A13G024200 Gossypium hirsutum HOM05D008287 ORTHO05D010110 2.9e-11 72.8 90 42.2
Gorai.013G025800 Gossypium raimondii HOM05D008287 ORTHO05D010110 2.9e-11 72.8 90 43.3
Aqoxy1G01238 Aquilegia oxysepala HOM05D008287 ORTHO05D010110 5.0e-11 72.0 96 45.8
CsaV3_5G036300 Cucumis sativus L. HOM05D008287 ORTHO05D010110 5.0e-11 72.0 92 44.6
MD01G1108600 Malus domestica HOM05D008287 ORTHO05D010110 6.5e-11 71.6 95 43.2
PGSC0003DMG400012876 Solanum tuberosum HOM05D008287 ORTHO05D010110 8.5e-11 71.2 90 44.4
Potri.010G222400 Populus trichocarpa HOM05D008287 ORTHO05D010110 1.1e-10 70.9 96 47.9
VMungo0464G1886 Vigna mungo HOM05D008287 ORTHO05D010110 1.9e-10 70.1 99 46.5
Lalb_Chr19g0129701 Lupinus albus HOM05D008287 ORTHO05D010110 4.2e-10 68.9 90 43.3
HanXRQChr01g0011461 Helianthus annuus HOM05D008287 ORTHO05D010110 7.2e-10 68.2 90 43.3
MBI10_g13401_MAGBIO Magnolia biondii HOM05D008287 ORTHO05D010110 7.2e-10 68.2 98 43.9
TPR.G822 Trifolium pratense HOM05D008287 ORTHO05D010110 9.4e-10 67.8 90 44.4
CSS0035042 Camellia sinensis var. sinensis HOM05D008287 ORTHO05D010110 2.7e-09 66.2 32 84.4
Nitab4.5_0000575g0160 Nicotiana tabacum HOM05D008287 ORTHO05D010110 1.0e-08 64.3 90 42.2
Nitab4.5_0010206g0030 Nicotiana tabacum HOM05D008287 ORTHO05D010110 1.0e-08 64.3 96 45.8
Cc06_g14360 Coffea canephora HOM05D008287 ORTHO05D010110 1.8e-08 63.5 100 41.0
Sed0007335 Sechium edule HOM05D008287 ORTHO05D010110 1.8e-08 63.5 90 38.9
Ciclev10033160m.g Citrus clementina HOM05D008287 ORTHO05D010110 4.0e-08 62.4 96 44.8
Cfa021511 Carpinus fangiana HOM05D008287 ORTHO05D010110 6.8e-08 61.6 90 47.8
Potri.008G039901 Populus trichocarpa HOM05D008287 ORTHO05D010110 6.8e-08 61.6 101 34.7
Sabra17G0123100 Salix brachista HOM05D008287 ORTHO05D010110 3.4e-07 59.3 52 57.7
Sabra08G0027300 Salix brachista HOM05D008287 ORTHO05D010110 9.8e-07 57.8 35 68.6
Os04g0521300 Oryza sativa ssp. japonica HOM05D049719 ORTHO05D049587 6.3e-06 55.1 28 82.1
FAN01G1692 Fragaria x ananassa HOM05D008287 ORTHO05D010110 8.3e-06 54.7 40 60.0


User provided reference genes

Program Settings