Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 3.5e-132 474.9 239 100.0
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 1.2e-98 363.6 222 84.7
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 2.8e-81 305.8 223 72.2
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 3.7e-73 278.9 196 71.9
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 6.4e-73 278.1 205 70.2
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 3.6e-68 262.3 203 66.0
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 2.6e-66 256.1 212 63.2
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 2.0e-63 246.5 172 70.3
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 6.0e-63 245.0 183 67.2
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 6.0e-63 245.0 205 60.0
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 7.8e-63 244.6 180 67.8
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 7.8e-63 244.6 213 60.1
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 1.7e-62 243.4 182 67.6
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 5.0e-62 241.9 184 65.2
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 5.0e-62 241.9 203 61.6
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 5.0e-62 241.9 203 61.6
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 5.0e-62 241.9 232 54.7
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 1.1e-61 240.7 204 60.8
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 1.9e-61 240.0 186 66.1
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 1.9e-61 240.0 210 60.5
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 1.9e-61 240.0 174 69.5
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 2.5e-61 239.6 202 61.9
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 2.5e-61 239.6 211 61.6
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 3.3e-61 239.2 219 58.9
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 4.3e-61 238.8 206 62.1
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 5.6e-61 238.4 223 57.8
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 7.3e-61 238.0 216 59.3
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 1.2e-60 237.3 222 56.8
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 3.6e-60 235.7 212 61.8
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 4.7e-60 235.3 179 64.8
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 8.1e-60 234.6 211 61.6
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 1.1e-59 234.2 211 61.6
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 1.4e-59 233.8 198 59.1
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.3e-59 233.0 188 64.4
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 2.3e-59 233.0 198 62.1
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 6.8e-59 231.5 197 60.4
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 8.9e-59 231.1 165 69.1
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 1.5e-58 230.3 188 62.2
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 2.0e-58 229.9 209 58.9
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 2.6e-58 229.6 213 59.2
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 7.5e-58 228.0 190 63.2
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 2.9e-57 226.1 158 67.7
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 2.9e-57 226.1 188 61.7
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 4.9e-57 225.3 227 55.9
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 6.4e-57 224.9 209 60.8
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 8.3e-57 224.6 202 59.4
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 1.1e-56 224.2 153 71.9
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 3.2e-56 222.6 190 61.6
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 5.4e-56 221.9 168 64.9
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 5.4e-56 221.9 181 64.6
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 9.2e-56 221.1 199 58.3
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 9.2e-56 221.1 199 59.3
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 1.6e-55 220.3 193 58.0
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 1.6e-55 220.3 206 58.3
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 1.6e-55 220.3 193 59.6
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 3.5e-55 219.2 223 54.3
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 6.0e-55 218.4 191 60.2
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 1.3e-54 217.2 231 52.8
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 1.3e-54 217.2 153 70.6
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 2.3e-54 216.5 153 70.6
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 3.9e-54 215.7 173 63.6
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 6.6e-54 214.9 224 52.2
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 8.6e-54 214.5 184 59.2
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 1.5e-53 213.8 189 59.8
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 1.9e-53 213.4 228 51.8
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.9e-53 213.4 186 58.6
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.9e-53 213.4 186 58.6
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 3.3e-53 212.6 188 58.5
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 3.3e-53 212.6 199 58.3
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 4.3e-53 212.2 197 58.9
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 4.3e-53 212.2 156 67.3
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 5.6e-53 211.8 157 68.2
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 9.5e-53 211.1 156 66.0
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 9.5e-53 211.1 199 58.3
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 1.6e-52 210.3 181 58.0
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 2.8e-52 209.5 186 57.0
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 2.8e-52 209.5 204 55.4
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 2.8e-52 209.5 204 55.4
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 2.8e-52 209.5 188 58.0
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 3.6e-52 209.1 173 63.0
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 3.6e-52 209.1 184 59.2
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 4.7e-52 208.8 156 67.9
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 6.2e-52 208.4 204 54.9
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 6.2e-52 208.4 174 62.1
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 1.1e-51 207.6 187 57.8
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 4.0e-51 205.7 153 66.7
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 5.2e-51 205.3 151 65.6
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 2.6e-50 203.0 178 61.8
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 8.4e-49 198.0 189 58.2
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 3.2e-48 196.1 183 57.4
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 1.6e-47 193.7 157 58.0
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 6.0e-47 191.8 175 58.9
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 2.5e-45 186.4 131 71.0
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 1.6e-44 183.7 166 57.8
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 1.1e-43 181.0 132 70.5
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 3.4e-42 176.0 131 67.9
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 6.4e-41 171.8 183 52.5
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 8.4e-41 171.4 161 56.5
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 3.2e-40 169.5 155 57.4
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 7.1e-40 168.3 208 48.1
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 1.6e-39 167.2 131 63.4
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 6.0e-39 165.2 149 52.3
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 1.0e-38 164.5 146 56.2
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 1.1e-37 161.0 154 55.2
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 1.5e-37 160.6 226 41.6
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 5.6e-37 158.7 157 54.1
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 4.8e-36 155.6 115 67.8
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 1.2e-34 151.0 146 52.7
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 1.7e-33 147.1 240 42.1
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 2.2e-33 146.7 204 45.1
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 2.9e-33 146.4 113 65.5
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 2.4e-32 143.3 170 46.5
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 4.2e-32 142.5 140 50.7
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.1e-31 140.2 108 66.7
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 2.7e-31 139.8 117 56.4
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 2.3e-30 136.7 109 66.1
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 2.5e-29 133.3 131 55.0
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.5e-29 133.3 131 55.0
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 2.5e-29 133.3 115 56.5
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 7.4e-29 131.7 119 58.0
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 9.6e-29 131.3 106 63.2
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 1.8e-27 127.1 149 48.3
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 2.4e-27 126.7 104 58.7
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 6.9e-27 125.2 104 57.7
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 1.5e-26 124.0 104 57.7
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 1.3e-25 120.9 124 50.0
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 1.2e-23 114.4 106 53.8
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 1.3e-20 104.4 141 40.4
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 2.8e-20 103.2 75 66.7
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 1.7e-17 94.0 69 63.8
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 5.5e-16 89.0 74 56.8
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 7.1e-16 88.6 69 60.9
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 3.5e-15 86.3 70 60.0
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 4.6e-15 85.9 76 51.3
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 6.0e-15 85.5 69 63.8
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 8.7e-14 81.6 86 50.0
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 1.5e-13 80.9 64 60.9
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 1.3e-12 77.8 83 48.2
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 9.0e-11 71.6 53 58.5
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 5.0e-09 65.9 65 53.8
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 1.9e-08 63.9 86 44.2
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 3.2e-08 63.2 73 46.6
RcHm_v2.0_Chr7g0228091 Rosa chinensis HOM05D005182 ORTHO05D344069 2.7e-07 60.1 97 38.1


User provided reference genes

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