Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 5.9e-112 407.5 202 100.0
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 6.5e-111 404.1 202 99.5
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 4.9e-66 255.0 191 71.7
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 4.1e-65 251.9 142 88.0
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 5.4e-65 251.5 142 87.3
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 5.4e-65 251.5 146 82.2
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 1.0e-63 247.3 146 82.2
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 1.0e-63 247.3 179 69.3
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 5.0e-63 245.0 157 76.4
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 1.1e-62 243.8 170 72.4
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 2.5e-62 242.7 145 79.3
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 2.5e-62 242.7 148 79.7
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 2.5e-62 242.7 142 83.1
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 2.5e-62 242.7 149 80.5
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 4.3e-62 241.9 149 78.5
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 5.6e-62 241.5 147 78.2
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 7.3e-62 241.1 149 79.9
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 9.5e-62 240.7 142 81.7
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 9.5e-62 240.7 147 79.6
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 1.2e-61 240.4 142 78.9
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 1.2e-61 240.4 148 76.4
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 1.6e-61 240.0 149 79.2
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 3.6e-61 238.8 149 78.5
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 6.2e-61 238.0 148 75.7
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 8.0e-61 237.7 148 75.0
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 1.1e-60 237.3 149 78.5
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 1.4e-60 236.9 149 79.2
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 2.3e-60 236.1 165 70.3
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 3.1e-60 235.7 148 76.4
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 5.2e-60 235.0 157 75.2
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 1.2e-59 233.8 145 78.6
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 1.5e-59 233.4 148 75.0
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 1.5e-59 233.4 146 76.0
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 1.5e-59 233.4 148 75.0
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 1.5e-59 233.4 186 63.4
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 5.8e-59 231.5 146 75.3
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 5.8e-59 231.5 146 75.3
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 7.5e-59 231.1 146 75.3
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 1.7e-58 229.9 145 75.2
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 2.2e-58 229.6 144 74.3
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 2.2e-58 229.6 145 75.2
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 4.9e-58 228.4 149 73.2
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 4.9e-58 228.4 163 66.9
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 1.1e-57 227.3 147 76.2
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 1.9e-57 226.5 150 76.0
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 2.4e-57 226.1 144 74.3
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 2.4e-57 226.1 148 73.0
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 2.4e-57 226.1 142 73.9
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 4.1e-57 225.3 145 73.1
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 7.1e-57 224.6 148 72.3
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 7.1e-57 224.6 146 73.3
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 1.2e-56 223.8 143 74.8
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 1.2e-56 223.8 149 71.1
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 1.2e-56 223.8 145 72.4
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 1.2e-56 223.8 147 70.7
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 2.7e-56 222.6 145 72.4
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 2.7e-56 222.6 152 71.7
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 3.5e-56 222.2 145 71.7
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 3.5e-56 222.2 139 77.7
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 6.0e-56 221.5 149 70.5
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 6.0e-56 221.5 146 71.2
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 1.3e-55 220.3 142 73.2
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 1.3e-55 220.3 147 69.4
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 2.3e-55 219.5 149 69.1
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 5.1e-55 218.4 145 72.4
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 6.6e-55 218.0 173 63.6
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 6.6e-55 218.0 179 63.7
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 4.3e-54 215.3 146 69.9
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 5.6e-54 214.9 187 58.8
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 7.3e-54 214.5 132 80.3
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 8.1e-53 211.1 146 65.8
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 1.1e-52 210.7 174 60.3
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 5.2e-52 208.4 146 69.2
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 3.4e-51 205.7 206 55.3
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 5.8e-51 204.9 146 67.8
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 5.8e-51 204.9 146 67.8
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 7.6e-51 204.5 146 67.8
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.3e-50 203.8 146 67.1
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 1.7e-50 203.4 165 62.4
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 4.9e-50 201.8 146 67.1
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 4.9e-50 201.8 145 66.2
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 2.4e-49 199.5 145 73.1
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 4.1e-49 198.7 147 69.4
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 2.3e-47 193.0 148 63.5
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 8.6e-47 191.0 147 63.9
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 1.9e-46 189.9 146 67.1
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 4.3e-46 188.7 112 82.1
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 4.7e-45 185.3 170 57.6
Mapoly0050s0048 Marchantia polymorpha HOM05D007188 ORTHO05D009102 1.9e-41 173.3 146 55.5
Mapoly0278s0008 Marchantia polymorpha HOM05D007188 ORTHO05D009102 1.9e-41 173.3 146 55.5
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 2.1e-40 169.9 144 59.7
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 4.6e-40 168.7 146 55.5
Hund14950 Selenicereus undatus HOM05D007188 ORTHO05D009102 3.0e-39 166.0 110 71.8
Nitab4.5_0000096g0330 Nicotiana tabacum HOM05D007188 ORTHO05D009102 1.9e-38 163.3 119 70.6
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 6.4e-34 148.3 90 77.8
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 1.1e-33 147.5 145 50.3
SMO358G0267 Selaginella moellendorffii HOM05D007188 ORTHO05D009102 1.9e-30 136.7 163 44.8
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 3.8e-26 122.5 113 55.8
CBR_g28804 Chara braunii HOM05D007188 ORTHO05D009102 2.1e-24 116.7 181 38.7
FvH4_7g18710 Fragaria vesca HOM05D007188 ORTHO05D009102 2.8e-21 106.3 84 61.9
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 8.1e-21 104.8 62 79.0
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 1.9e-17 93.6 147 42.2
MCO11G330 Micromonas commoda HOM05D007188 ORTHO05D009102 3.2e-17 92.8 184 29.9
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 3.2e-17 92.8 157 40.1
PRCOL_00002171 Prasinoderma coloniale HOM05D007188 ORTHO05D009102 3.3e-14 82.8 141 34.0
Cre10.g464650 Chlamydomonas reinhardtii HOM05D007188 ORTHO05D009102 9.0e-12 74.7 122 29.5
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 9.0e-12 74.7 51 72.5
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 1.3e-10 70.9 50 68.0
AUR62034156 Chenopodium quinoa HOM05D007188 ORTHO05D009102 1.4e-09 67.4 76 46.1
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 5.5e-09 65.5 43 76.7
FAN10G3168 Fragaria x ananassa HOM05D007188 ORTHO05D009102 7.9e-08 61.6 54 57.4
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 3.0e-07 59.7 48 52.1
VMungo1080G0524 Vigna mungo HOM05D007188 ORTHO05D008722 3.9e-07 59.3 32 84.4


User provided reference genes

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