Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0147900 Rhododendron simsii HOM05D000026 ORTHO05D000094 4.8e-67 257.7 129 100.0
RhsimUnG0185300 Rhododendron simsii HOM05D000026 ORTHO05D000094 1.0e-56 223.4 152 78.9
vmacro04836 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 1.5e-23 113.2 73 80.8
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 1.2e-22 110.2 71 80.3
vmacro04838 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 4.0e-21 105.1 73 75.3
CSS0030004 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D000094 6.4e-19 97.8 73 69.9
CSS0044194 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D000094 8.3e-19 97.4 73 68.5
CSS0045200 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D000094 1.1e-18 97.1 73 68.5
Dinv34367 Davidia involucrata HOM05D000026 ORTHO05D000094 5.4e-18 94.7 72 66.7
Dinv34368 Davidia involucrata HOM05D000026 ORTHO05D000094 1.2e-17 93.6 73 65.8
CSS0025858 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D000094 2.7e-17 92.4 73 67.1
CSS0047090 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D000094 3.5e-17 92.0 74 66.2
Actinidia09261 Actinidia chinensis HOM05D000026 ORTHO05D000094 7.8e-17 90.9 74 70.3
CSS0018939 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D000094 1.3e-16 90.1 72 62.5
Actinidia09262 Actinidia chinensis HOM05D000026 ORTHO05D000094 1.7e-16 89.7 70 71.4
CSS0005941 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D000094 2.3e-16 89.4 73 64.4
CSS0023914 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D000094 3.0e-16 89.0 72 62.5
CSS0017917 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D000094 3.9e-16 88.6 72 63.9
Dinv34366 Davidia involucrata HOM05D000026 ORTHO05D000094 3.3e-15 85.5 73 63.0
BcaC09g51685 Brassica carinata HOM05D000026 ORTHO05D000094 9.5e-15 84.0 82 54.9
Actinidia09263 Actinidia chinensis HOM05D000026 ORTHO05D000094 1.6e-14 83.2 70 67.1
BolC1t01008H Brassica oleracea HOM05D000026 ORTHO05D000094 3.6e-14 82.0 78 56.4
BraA01t00840Z Brassica rapa HOM05D000026 ORTHO05D000094 1.1e-13 80.5 83 54.2
THA.LOC104813870 Tarenaya hassleriana HOM05D000026 ORTHO05D000094 1.1e-13 80.5 81 58.0
Actinidia09264 Actinidia chinensis HOM05D000026 ORTHO05D000094 1.4e-13 80.1 70 65.7
Dinv09478 Davidia involucrata HOM05D000026 ORTHO05D000094 3.1e-13 79.0 73 57.5
AT4G29050 Arabidopsis thaliana HOM05D000026 ORTHO05D000094 4.0e-13 78.6 80 52.5
Manes.08G058800 Manihot esculenta HOM05D000026 ORTHO05D000094 4.0e-13 78.6 130 42.3
Actinidia26488 Actinidia chinensis HOM05D000026 ORTHO05D000094 5.2e-13 78.2 154 34.4
Carub.0007s1154 Capsella rubella HOM05D000026 ORTHO05D000094 5.2e-13 78.2 132 40.2
BraA08t33937Z Brassica rapa HOM05D000026 ORTHO05D000094 2.0e-12 76.3 78 50.0
CARHR236790 Cardamine hirsuta HOM05D000026 ORTHO05D000094 2.6e-12 75.9 79 51.9
Eucgr.K01640 Eucalyptus grandis HOM05D000026 ORTHO05D000094 4.4e-12 75.1 106 44.3
CARHR063210 Cardamine hirsuta HOM05D000026 ORTHO05D000094 7.5e-12 74.3 90 47.8
BcaC07g38374 Brassica carinata HOM05D000026 ORTHO05D000094 1.3e-11 73.6 78 48.7
Gohir.D11G316000 Gossypium hirsutum HOM05D000026 ORTHO05D000094 1.3e-11 73.6 78 50.0
Manes.09G006300 Manihot esculenta HOM05D000026 ORTHO05D000094 1.7e-11 73.2 78 52.6
BolC8t48801H Brassica oleracea HOM05D000026 ORTHO05D000094 1.1e-10 70.5 78 46.2
Gohir.A11G300925 Gossypium hirsutum HOM05D000026 ORTHO05D000094 1.1e-10 70.5 78 48.7
Gohir.D11G316800 Gossypium hirsutum HOM05D000026 ORTHO05D000094 1.4e-10 70.1 80 48.8
Gorai.007G346700 Gossypium raimondii HOM05D000026 ORTHO05D000094 1.4e-10 70.1 80 47.5
Gohir.D11G316200 Gossypium hirsutum HOM05D000026 ORTHO05D000094 2.4e-10 69.3 80 47.5
Rhsim09G0150700 Rhododendron simsii HOM05D000026 ORTHO05D000094 2.4e-10 69.3 46 76.1
THA.LOC104810553 Tarenaya hassleriana HOM05D000026 ORTHO05D000094 2.4e-10 69.3 73 45.2
BcaC08g45843 Brassica carinata HOM05D000026 ORTHO05D000094 3.2e-10 68.9 73 47.9
BolC6t38754H Brassica oleracea HOM05D000026 ORTHO05D000094 4.1e-10 68.6 72 47.2
BcaC03g15157 Brassica carinata HOM05D000026 ORTHO05D000094 5.4e-10 68.2 74 51.4
BolC2t08790H Brassica oleracea HOM05D000026 ORTHO05D000094 5.4e-10 68.2 74 51.4
Carub.0004s2623 Capsella rubella HOM05D000026 ORTHO05D000094 7.0e-10 67.8 74 52.7
Duzib151G0011 Durio zibethinus HOM05D000026 ORTHO05D000094 7.0e-10 67.8 79 51.9
BcaC04g18814 Brassica carinata HOM05D000026 ORTHO05D021647 9.2e-10 67.4 80 50.0
BcaNung01335 Brassica carinata HOM05D000026 ORTHO05D000094 9.2e-10 67.4 77 51.9
vmacro04834 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 9.2e-10 67.4 40 82.5
vmacro10251 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 9.2e-10 67.4 40 82.5
AL2G29360 Arabidopsis lyrata HOM05D000026 ORTHO05D000094 1.6e-09 66.6 77 45.5
Thhalv10001352m.g Eutrema salsugineum HOM05D000026 ORTHO05D000094 1.6e-09 66.6 78 50.0
Gohir.D11G316250 Gossypium hirsutum HOM05D000026 ORTHO05D000094 1.6e-09 66.6 80 45.0
AL462U10010 Arabidopsis lyrata HOM05D000026 ORTHO05D000094 2.0e-09 66.2 74 45.9
AL4G42520 Arabidopsis lyrata HOM05D000026 ORTHO05D000094 2.0e-09 66.2 74 45.9
THA.LOC104811327 Tarenaya hassleriana HOM05D000026 ORTHO05D000094 2.0e-09 66.2 75 45.3
Aa31LG1G25410 Aethionema arabicum HOM05D000026 ORTHO05D000094 2.7e-09 65.9 76 47.4
Carub.0002s1678 Capsella rubella HOM05D000026 ORTHO05D000094 3.5e-09 65.5 77 49.4
Thhalv10019670m.g Eutrema salsugineum HOM05D000026 ORTHO05D000094 4.6e-09 65.1 77 46.8
Rhsim09G0147600 Rhododendron simsii HOM05D000026 ORTHO05D000094 4.6e-09 65.1 42 81.0
CARHR138890 Cardamine hirsuta HOM05D000026 ORTHO05D000094 6.0e-09 64.7 73 47.9
AT2G43700 Arabidopsis thaliana HOM05D000026 ORTHO05D000094 1.0e-08 63.9 78 48.7
C06p43990 Brassica napus HOM05D000026 ORTHO05D000094 1.0e-08 63.9 46 65.2
BolC6t39470H Brassica oleracea HOM05D000026 ORTHO05D000094 1.0e-08 63.9 46 65.2
CARHR063200 Cardamine hirsuta HOM05D000026 ORTHO05D000094 1.0e-08 63.9 73 45.2
Dinv34369 Davidia involucrata HOM05D000026 ORTHO05D000094 1.0e-08 63.9 64 54.7
Aa31LG7G7920 Aethionema arabicum HOM05D000026 ORTHO05D000094 1.3e-08 63.5 75 48.0
AT1G70130 Arabidopsis thaliana HOM05D000026 ORTHO05D000094 1.3e-08 63.5 81 44.4
Sp5g25230 Schrenkiella parvula HOM05D000026 ORTHO05D000094 1.7e-08 63.2 46 63.0
C02p27280 Brassica napus HOM05D000026 ORTHO05D000094 2.3e-08 62.8 73 47.9
AT1G70110 Arabidopsis thaliana HOM05D000026 ORTHO05D000094 3.0e-08 62.4 77 44.2
A07p36590 Brassica napus HOM05D000026 ORTHO05D000094 3.0e-08 62.4 46 65.2
BraA07t31225Z Brassica rapa HOM05D000026 ORTHO05D000094 3.0e-08 62.4 46 65.2
BcaC01g05219 Brassica carinata HOM05D000026 ORTHO05D000094 3.9e-08 62.0 80 45.0
BcaC03g15155 Brassica carinata HOM05D000026 ORTHO05D021647 3.9e-08 62.0 73 49.3
BolC2t08788H Brassica oleracea HOM05D000026 ORTHO05D000094 3.9e-08 62.0 73 49.3
BolC3t15261H Brassica oleracea HOM05D000026 ORTHO05D000094 3.9e-08 62.0 80 45.0
TAR365G0086 Trochodendron aralioides HOM05D000026 ORTHO05D000094 6.6e-08 61.2 61 49.2
CSS0046784 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D000094 8.6e-08 60.8 71 47.9
A08p19770 Brassica napus HOM05D000026 ORTHO05D000094 1.1e-07 60.5 46 58.7
CARHR170070 Cardamine hirsuta HOM05D000026 ORTHO05D000094 1.1e-07 60.5 76 44.7
Nn7g36679 Nelumbo nucifera HOM05D000026 ORTHO05D000094 1.1e-07 60.5 77 46.8
BcaC05g26499 Brassica carinata HOM05D000026 ORTHO05D000094 1.9e-07 59.7 46 58.7
BcaC08g46462 Brassica carinata HOM05D000026 ORTHO05D000094 1.9e-07 59.7 115 38.3
A03p24400 Brassica napus HOM05D000026 ORTHO05D000094 1.9e-07 59.7 72 47.2
C03p29100 Brassica napus HOM05D000026 ORTHO05D000094 1.9e-07 59.7 74 45.9
BcaC02g07157 Brassica carinata HOM05D000026 ORTHO05D000094 2.5e-07 59.3 78 42.3
BcaNung07267 Brassica carinata HOM05D000026 ORTHO05D000094 2.5e-07 59.3 46 60.9
A04p33000 Brassica napus HOM05D000026 ORTHO05D000094 2.5e-07 59.3 78 42.3
C04p70690 Brassica napus HOM05D000026 ORTHO05D000094 2.5e-07 59.3 78 42.3
BolC4t28570H Brassica oleracea HOM05D000026 ORTHO05D000094 2.5e-07 59.3 78 42.3
BraA04t18759Z Brassica rapa HOM05D000026 ORTHO05D000094 2.5e-07 59.3 78 42.3
CSS0044076 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D000094 2.5e-07 59.3 47 61.7
CARHR063220 Cardamine hirsuta HOM05D000026 ORTHO05D000094 2.5e-07 59.3 81 40.7
Gohir.A11G297625 Gossypium hirsutum HOM05D000026 ORTHO05D000094 2.5e-07 59.3 49 57.1
AL7G49860 Arabidopsis lyrata HOM05D000026 ORTHO05D000094 3.3e-07 58.9 37 73.0
A02p16340 Brassica napus HOM05D000629 ORTHO05D000576 4.3e-07 58.5 46 58.7
BraA02t06692Z Brassica rapa HOM05D000026 ORTHO05D000094 4.3e-07 58.5 46 58.7
Duzib213G0136 Durio zibethinus HOM05D000026 ORTHO05D000094 4.3e-07 58.5 74 43.2
C01p10480 Brassica napus HOM05D000026 ORTHO05D000094 5.6e-07 58.2 46 60.9
Thecc.05G035200 Theobroma cacao HOM05D000026 ORTHO05D000094 5.6e-07 58.2 75 42.7
TAR633G1379 Trochodendron aralioides HOM05D000026 ORTHO05D000094 5.6e-07 58.2 61 47.5
AL2G29400 Arabidopsis lyrata HOM05D000026 ORTHO05D000094 7.3e-07 57.8 81 42.0
A01p08940 Brassica napus HOM05D000026 ORTHO05D000094 7.3e-07 57.8 46 58.7
C06p36340 Brassica napus HOM05D000026 ORTHO05D000094 7.3e-07 57.8 47 53.2
Medtr7g062940 Medicago truncatula HOM05D000026 ORTHO05D000094 7.3e-07 57.8 46 60.9
AL5G41770 Arabidopsis lyrata HOM05D000026 ORTHO05D000094 9.5e-07 57.4 77 48.1
C05p25500 Brassica napus HOM05D000026 ORTHO05D000094 9.5e-07 57.4 46 56.5
Nn2g14834 Nelumbo nucifera HOM05D000026 ORTHO05D000094 9.5e-07 57.4 46 60.9
QL07p022164 Quercus lobata HOM05D000026 ORTHO05D000094 9.5e-07 57.4 61 45.9
QL07p030935 Quercus lobata HOM05D000026 ORTHO05D000094 9.5e-07 57.4 61 45.9
TAR633G0067 Trochodendron aralioides HOM05D000026 ORTHO05D000094 9.5e-07 57.4 61 49.2
AT3G59750 Arabidopsis thaliana HOM05D000026 ORTHO05D000094 1.2e-06 57.0 79 45.6
C06p44010 Brassica napus HOM05D000026 ORTHO05D000094 1.2e-06 57.0 84 40.5
TAR365G1245 Trochodendron aralioides HOM05D000026 ORTHO05D000094 1.2e-06 57.0 61 47.5
AL4G42530 Arabidopsis lyrata HOM05D000026 ORTHO05D000094 1.6e-06 56.6 78 41.0
Carub.0002s1681 Capsella rubella HOM05D000026 ORTHO05D000094 1.6e-06 56.6 81 39.5
Eucgr.G00291 Eucalyptus grandis HOM05D000026 ORTHO05D000094 1.6e-06 56.6 61 45.9
Phvul.008G117800 Phaseolus vulgaris HOM05D000026 ORTHO05D000094 1.6e-06 56.6 46 60.9
QL07p030059 Quercus lobata HOM05D000026 ORTHO05D000094 1.6e-06 56.6 61 44.3
Sp5g03460 Schrenkiella parvula HOM05D000026 ORTHO05D000094 1.6e-06 56.6 76 44.7
Sp5g03480 Schrenkiella parvula HOM05D000026 ORTHO05D000094 1.6e-06 56.6 76 42.1
Thecc.05G035000 Theobroma cacao HOM05D000026 ORTHO05D000094 1.6e-06 56.6 74 40.5
BolC6t37797H Brassica oleracea HOM05D000026 ORTHO05D000094 2.1e-06 56.2 73 39.7
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 2.1e-06 56.2 61 49.2
Glyma.18G185400 Glycine max HOM05D000026 ORTHO05D000094 2.1e-06 56.2 61 47.5
QL07p029988 Quercus lobata HOM05D000026 ORTHO05D000094 2.1e-06 56.2 61 45.9
QL07p030086 Quercus lobata HOM05D000026 ORTHO05D000094 2.1e-06 56.2 61 45.9
QL07p030927 Quercus lobata HOM05D000026 ORTHO05D000094 2.1e-06 56.2 61 45.9
THA.LOC104823412 Tarenaya hassleriana HOM05D000026 ORTHO05D000094 2.1e-06 56.2 46 58.7
TAR633G0225 Trochodendron aralioides HOM05D000026 ORTHO05D000094 2.1e-06 56.2 61 49.2
VMungo1383G1194 Vigna mungo HOM05D000026 ORTHO05D000094 2.1e-06 56.2 46 60.9
AT3G59700 Arabidopsis thaliana HOM05D000026 ORTHO05D000094 2.8e-06 55.8 77 40.3
BcaNung07268 Brassica carinata HOM05D000026 ORTHO05D000094 2.8e-06 55.8 80 41.2
BolC6t39473H Brassica oleracea HOM05D000026 ORTHO05D000094 2.8e-06 55.8 80 41.2
Ciclev10011218m.g Citrus clementina HOM05D000026 ORTHO05D000094 2.8e-06 55.8 61 49.2
Eucgr.E03710 Eucalyptus grandis HOM05D000026 ORTHO05D000094 2.8e-06 55.8 46 56.5
Lalb_Chr01g0022641 Lupinus albus HOM05D000026 ORTHO05D000094 2.8e-06 55.8 46 60.9
THA.LOC104806555 Tarenaya hassleriana HOM05D000026 ORTHO05D000094 2.8e-06 55.8 46 63.0
Haze_20832 Corylus avellana HOM05D000026 ORTHO05D000094 3.6e-06 55.5 46 54.3
Duzib093G0102 Durio zibethinus HOM05D000026 ORTHO05D000094 3.6e-06 55.5 74 37.8
Eucgr.E03712 Eucalyptus grandis HOM05D000026 ORTHO05D000094 3.6e-06 55.5 46 56.5
Hma1.2p1_1082F.1_g255110 Hydrangea macrophylla HOM05D000026 ORTHO05D000094 3.6e-06 55.5 61 47.5
Potri.003G196600 Populus trichocarpa HOM05D000026 ORTHO05D000094 3.6e-06 55.5 73 41.1
PGR004G0810 Punica granatum HOM05D000026 ORTHO05D000094 3.6e-06 55.5 61 44.3
arahy.Tifrunner.gnm1.ann1.UP75CU Arachis hypogaea HOM05D000026 ORTHO05D000094 4.7e-06 55.1 46 63.0
Eucgr.K03069 Eucalyptus grandis HOM05D000026 ORTHO05D000094 4.7e-06 55.1 61 44.3
MD04G1133500 Malus domestica HOM05D000026 ORTHO05D000094 4.7e-06 55.1 61 47.5
QL01p036851 Quercus lobata HOM05D000026 ORTHO05D000094 4.7e-06 55.1 61 44.3
QL07p030951 Quercus lobata HOM05D000026 ORTHO05D000094 4.7e-06 55.1 61 44.3
QL07p030990 Quercus lobata HOM05D000026 ORTHO05D000094 4.7e-06 55.1 61 44.3
arahy.Tifrunner.gnm1.ann1.WT0JX9 Arachis hypogaea HOM05D000026 ORTHO05D000094 6.2e-06 54.7 46 58.7
arahy.Tifrunner.gnm1.ann1.Y2Z9LS Arachis hypogaea HOM05D000026 ORTHO05D000094 6.2e-06 54.7 46 58.7
BcaB01g03367 Brassica carinata HOM05D000026 ORTHO05D000094 6.2e-06 54.7 44 54.5
BcaC02g10076 Brassica carinata HOM05D000026 ORTHO05D021647 6.2e-06 54.7 76 43.4
BcaC02g10077 Brassica carinata HOM05D000026 ORTHO05D000094 6.2e-06 54.7 76 43.4
CiPaw.09G196000 Carya illinoinensis HOM05D000026 ORTHO05D000094 6.2e-06 54.7 46 54.3
CiPaw.14G065500 Carya illinoinensis HOM05D000026 ORTHO05D000094 6.2e-06 54.7 65 50.8
Eucgr.H01502 Eucalyptus grandis HOM05D000026 ORTHO05D000094 6.2e-06 54.7 46 58.7
Hma1.2p1_0766F.1_g215360 Hydrangea macrophylla HOM05D000026 ORTHO05D000094 6.2e-06 54.7 61 47.5
Hma1.2p1_0766F.1_g215370 Hydrangea macrophylla HOM05D000026 ORTHO05D000094 6.2e-06 54.7 61 45.9
Hma1.2p1_0936F.1_g239020 Hydrangea macrophylla HOM05D000026 ORTHO05D000094 6.2e-06 54.7 61 45.9
Hma1.2p1_1082F.1_g255120 Hydrangea macrophylla HOM05D000026 ORTHO05D000094 6.2e-06 54.7 61 45.9
Hma1.2p1_1082F.1_g255130 Hydrangea macrophylla HOM05D000026 ORTHO05D000094 6.2e-06 54.7 61 45.9
AL4G42510 Arabidopsis lyrata HOM05D000026 ORTHO05D000094 8.1e-06 54.3 77 40.3
BcaC02g12370 Brassica carinata HOM05D000026 ORTHO05D021647 8.1e-06 54.3 78 39.7
A07p36610 Brassica napus HOM05D000026 ORTHO05D000094 8.1e-06 54.3 45 53.3
BraA07t31227Z Brassica rapa HOM05D000026 ORTHO05D000094 8.1e-06 54.3 45 53.3
CSS0006836 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D000094 8.1e-06 54.3 81 40.7
Carub.0005s2642 Capsella rubella HOM05D000026 ORTHO05D000094 8.1e-06 54.3 73 39.7
Eucgr.I00837 Eucalyptus grandis HOM05D000026 ORTHO05D000094 8.1e-06 54.3 46 54.3
Manes.09G094700 Manihot esculenta HOM05D000026 ORTHO05D000094 8.1e-06 54.3 46 58.7
Nn2g13436 Nelumbo nucifera HOM05D000026 ORTHO05D000094 8.1e-06 54.3 46 52.2
Nn7g36681 Nelumbo nucifera HOM05D000026 ORTHO05D000094 8.1e-06 54.3 79 40.5
QL07p029954 Quercus lobata HOM05D000026 ORTHO05D000094 8.1e-06 54.3 61 44.3


User provided reference genes

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