Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 1.5e-115 419.5 209 100.0
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 2.6e-46 189.5 166 65.1
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 6.9e-31 138.3 207 47.3
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 1.0e-26 124.4 208 43.3
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 1.3e-26 124.0 208 42.8
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 1.3e-26 124.0 155 49.7
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 1.5e-22 110.5 214 40.2
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 5.8e-22 108.6 159 47.2
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 7.6e-22 108.2 205 39.5
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 7.9e-19 98.2 178 41.0
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 3.9e-18 95.9 183 40.4
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 8.7e-18 94.7 194 41.8
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 1.9e-17 93.6 161 42.2
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 2.5e-17 93.2 211 37.9
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 4.3e-17 92.4 183 37.7
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 4.3e-17 92.4 208 37.0
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 5.7e-17 92.0 84 63.1
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 7.4e-17 91.7 192 38.5
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 9.6e-17 91.3 211 37.0
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 1.3e-16 90.9 213 38.5
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 1.6e-16 90.5 147 42.2
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 1.6e-16 90.5 144 45.1
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 3.7e-16 89.4 209 37.3
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 6.2e-16 88.6 195 39.0
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 6.2e-16 88.6 183 36.1
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 6.2e-16 88.6 174 36.8
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 8.2e-16 88.2 184 37.0
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 8.2e-16 88.2 186 36.0
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 1.4e-15 87.4 163 39.9
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 1.8e-15 87.0 215 38.1
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 1.8e-15 87.0 186 35.5
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 2.4e-15 86.7 188 37.2
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 2.4e-15 86.7 186 37.1
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 2.4e-15 86.7 208 35.6
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 3.1e-15 86.3 211 35.1
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 3.1e-15 86.3 177 40.1
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 6.9e-15 85.1 196 35.2
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 6.9e-15 85.1 187 35.8
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 6.9e-15 85.1 217 33.6
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 6.9e-15 85.1 186 34.9
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 9.0e-15 84.7 174 33.9
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 9.0e-15 84.7 183 36.1
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 1.5e-14 84.0 173 36.4
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 1.5e-14 84.0 156 39.1
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 1.5e-14 84.0 204 32.4
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 2.0e-14 83.6 153 38.6
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 2.0e-14 83.6 153 38.6
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 2.6e-14 83.2 212 32.5
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 2.6e-14 83.2 186 36.0
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 3.4e-14 82.8 186 35.5
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 3.4e-14 82.8 162 36.4
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 7.6e-14 81.6 210 34.3
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 1.3e-13 80.9 174 33.3
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 1.3e-13 80.9 173 36.4
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 1.3e-13 80.9 146 39.0
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 1.7e-13 80.5 190 37.4
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 2.9e-13 79.7 169 38.5
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 6.5e-13 78.6 206 33.0
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 6.5e-13 78.6 208 35.1
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 1.1e-12 77.8 133 41.4
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 1.9e-12 77.0 187 35.8
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 2.5e-12 76.6 181 37.0
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 5.5e-12 75.5 161 37.3
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 7.1e-12 75.1 175 37.7
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 9.3e-12 74.7 210 33.8
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 1.2e-11 74.3 186 34.4
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 2.7e-11 73.2 207 32.9
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 3.5e-11 72.8 207 32.4
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 4.6e-11 72.4 179 31.3
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 6.1e-11 72.0 209 31.1
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 6.1e-11 72.0 211 30.3
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 6.1e-11 72.0 207 32.9
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 7.9e-11 71.6 175 32.0
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 1.0e-10 71.2 161 34.2
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 1.0e-10 71.2 210 30.5
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 1.0e-10 71.2 152 34.9
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 1.3e-10 70.9 185 30.8
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 2.3e-10 70.1 179 31.3
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.3e-10 70.1 190 34.7
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 3.9e-10 69.3 199 31.2
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 3.9e-10 69.3 151 39.7
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 8.7e-10 68.2 152 32.2
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.1e-09 67.8 190 33.7
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.5e-09 67.4 191 34.6
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.5e-09 67.4 191 34.6
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 3.3e-09 66.2 191 34.0
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 4.3e-09 65.9 33 90.9
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 4.3e-09 65.9 60 60.0
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 5.7e-09 65.5 216 31.0
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 2.8e-08 63.2 73 45.2
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 1.1e-07 61.2 33 84.8
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 1.1e-07 61.2 40 70.0
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 2.4e-07 60.1 156 29.5
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 4.1e-07 59.3 52 61.5
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 5.3e-07 58.9 71 52.1
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 1.2e-06 57.8 34 76.5
Mapoly0050s0048 Marchantia polymorpha HOM05D007188 ORTHO05D009102 2.0e-06 57.0 205 28.8
Mapoly0278s0008 Marchantia polymorpha HOM05D007188 ORTHO05D009102 2.0e-06 57.0 205 28.8
VMungo1080G0524 Vigna mungo HOM05D007188 ORTHO05D008722 2.0e-06 57.0 32 78.1


User provided reference genes

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