Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0146500 Rhododendron simsii HOM05D001960 ORTHO05D004348 2.6e-49 198.4 96 100.0
CSS0024221 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 6.0e-30 134.0 73 86.3
MSTRG.15485 Avicennia marina HOM05D001960 ORTHO05D004348 1.3e-29 132.9 73 84.9
CSS0022239 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 1.3e-29 132.9 73 84.9
Ciclev10012084m.g Citrus clementina HOM05D001960 ORTHO05D004348 1.3e-29 132.9 73 84.9
Lj2A726T8 Lonicera japonica HOM05D001960 ORTHO05D004348 1.3e-29 132.9 73 84.9
SalBow1G4343 Salvia bowleyana HOM05D001960 ORTHO05D004348 1.3e-29 132.9 73 84.9
SGA_v2.0_scaffold236G43786 Striga asiatica HOM05D001960 ORTHO05D004348 1.3e-29 132.9 73 84.9
SGA_v2.0_scaffold30G12526 Striga asiatica HOM05D001960 ORTHO05D004348 1.3e-29 132.9 73 84.9
Ah.10g031310 Amaranthus hybridus HOM05D001960 ORTHO05D004348 2.3e-29 132.1 73 83.6
Ah.12g065390 Amaranthus hybridus HOM05D001960 ORTHO05D004348 2.3e-29 132.1 73 83.6
CSS0002033 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 2.3e-29 132.1 73 84.9
FvH4_6g49160 Fragaria vesca HOM05D001960 ORTHO05D004348 2.3e-29 132.1 73 84.9
FAN02G2692 Fragaria x ananassa HOM05D001960 ORTHO05D004348 2.3e-29 132.1 73 84.9
FAN05G5323 Fragaria x ananassa HOM05D001960 ORTHO05D004348 2.3e-29 132.1 73 84.9
FAN09G1760 Fragaria x ananassa HOM05D001960 ORTHO05D004348 2.3e-29 132.1 73 84.9
FAN09G2614 Fragaria x ananassa HOM05D001960 ORTHO05D004348 2.3e-29 132.1 73 84.9
FAN14G2932 Fragaria x ananassa HOM05D001960 ORTHO05D004348 2.3e-29 132.1 73 84.9
HanXRQChr15g0474171 Helianthus annuus HOM05D001960 ORTHO05D004348 2.3e-29 132.1 73 84.9
MD09G1048000 Malus domestica HOM05D001960 ORTHO05D004348 2.3e-29 132.1 73 84.9
MD17G1048200 Malus domestica HOM05D001960 ORTHO05D004348 2.3e-29 132.1 73 84.9
PSO017G2769 Papaver somniferum HOM05D001960 ORTHO05D004348 2.3e-29 132.1 73 84.9
PSO478G2180 Papaver somniferum HOM05D001960 ORTHO05D004348 2.3e-29 132.1 73 84.9
Potri.017G079200 Populus trichocarpa HOM05D001960 ORTHO05D004348 2.3e-29 132.1 73 83.6
Sabra17G0070400 Salix brachista HOM05D001960 ORTHO05D004348 2.3e-29 132.1 73 83.6
unitig_748.g8436 Utricularia gibba HOM05D001960 ORTHO05D004348 2.3e-29 132.1 73 84.9
Actinidia34797 Actinidia chinensis HOM05D001960 ORTHO05D004348 3.0e-29 131.7 73 83.6
Actinidia38882 Actinidia chinensis HOM05D001960 ORTHO05D004348 3.0e-29 131.7 73 83.6
vmacro10254 Vaccinium macrocarpon HOM05D001960 ORTHO05D004348 3.9e-29 131.3 62 95.2
HPP92_006462 Vanilla planifolia HOM05D001960 ORTHO05D004348 3.9e-29 131.3 73 83.6
Aqoxy3G03291 Aquilegia oxysepala HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
MSTRG.3317 Avicennia marina HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
CANSAT11G2018 Cannabis sativa HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
Cpa.g.sc14.35 Carica papaya HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
COL.COLO4_25163 Corchorus olitorius HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
DCAR_011153 Daucus carota HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
DCAR_011154 Daucus carota HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
Duzib187G1412 Durio zibethinus HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
Gohir.A07G215700 Gossypium hirsutum HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
Gohir.A09G022100 Gossypium hirsutum HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
Gohir.D07G222700 Gossypium hirsutum HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
Gohir.D09G021300 Gossypium hirsutum HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
Gorai.001G257000 Gossypium raimondii HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
Gorai.006G025300 Gossypium raimondii HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
HanXRQChr17g0547421 Helianthus annuus HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
Hma1.2p1_0449F.1_g155170 Hydrangea macrophylla HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
Lsat_1_v5_gn_2_88741 Lactuca sativa HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
Lsat_1_v5_gn_3_102160 Lactuca sativa HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
Manes.17G022500 Manihot esculenta HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
Manes.17G022600 Manihot esculenta HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
Prupe.3G271000 Prunus persica HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
RcHm_v2.0_Chr2g0169031 Rosa chinensis HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
Hund13234 Selenicereus undatus HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 82.2
Thecc.04G075700 Theobroma cacao HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
TAR374G0426 Trochodendron aralioides HOM05D001960 ORTHO05D004348 5.0e-29 131.0 73 83.6
Dinv33731 Davidia involucrata HOM05D001960 ORTHO05D004348 6.6e-29 130.6 73 82.2
ECA246G2943 Erigeron canadensis HOM05D001960 ORTHO05D004348 6.6e-29 130.6 73 83.6
Medtr7g009590 Medicago truncatula HOM05D001960 ORTHO05D004348 6.6e-29 130.6 73 83.6
EL10Ac2g02943 Beta vulgaris HOM05D001960 ORTHO05D004348 8.6e-29 130.2 73 82.2
AUR62031635 Chenopodium quinoa HOM05D001960 ORTHO05D004348 8.6e-29 130.2 73 82.2
AUR62038866 Chenopodium quinoa HOM05D001960 ORTHO05D004348 8.6e-29 130.2 73 82.2
ClCG10G014880 Citrullus lanatus HOM05D001960 ORTHO05D004348 1.1e-28 129.8 73 82.2
MELO3C009887.2 Cucumis melo HOM05D001960 ORTHO05D004348 1.1e-28 129.8 73 82.2
CsaV3_3G041630 Cucumis sativus L. HOM05D001960 ORTHO05D004348 1.1e-28 129.8 73 82.2
Duzib147G0831 Durio zibethinus HOM05D001960 ORTHO05D004348 1.1e-28 129.8 73 82.2
Migut.H00896 Erythranthe guttata HOM05D001960 ORTHO05D004348 1.1e-28 129.8 73 83.6
Oeu050223.1 Olea europaea HOM05D001960 ORTHO05D004348 1.5e-28 129.4 73 80.8
PGR142G1484 Punica granatum HOM05D001960 ORTHO05D004348 1.5e-28 129.4 73 80.8
Sed0008481 Sechium edule HOM05D001960 ORTHO05D004348 1.5e-28 129.4 73 80.8
CAN.G128.149 Capsicum annuum HOM05D001960 ORTHO05D004348 2.5e-28 128.6 73 82.2
Solyc10g081530.2 Solanum lycopersicum HOM05D001960 ORTHO05D004348 2.5e-28 128.6 73 82.2
Sopen10g032040 Solanum pennellii HOM05D001960 ORTHO05D004348 2.5e-28 128.6 73 82.2
PGSC0003DMG400028218 Solanum tuberosum HOM05D001960 ORTHO05D004348 2.5e-28 128.6 73 82.2
Peaxi162Scf00163g00105 Petunia axillaris HOM05D001960 ORTHO05D004348 3.3e-28 128.3 83 74.7
Psat3g196680 Pisum sativum HOM05D001960 ORTHO05D004348 3.3e-28 128.3 73 80.8
THA.LOC104805447 Tarenaya hassleriana HOM05D001960 ORTHO05D004348 3.3e-28 128.3 73 80.8
THA.LOC104823931 Tarenaya hassleriana HOM05D001960 ORTHO05D004348 3.3e-28 128.3 73 80.8
arahy.Tifrunner.gnm1.ann1.EZF2RR Arachis hypogaea HOM05D001960 ORTHO05D004348 4.3e-28 127.9 73 80.8
arahy.Tifrunner.gnm1.ann1.M50Q99 Arachis hypogaea HOM05D001960 ORTHO05D004348 4.3e-28 127.9 73 80.8
Migut.K01329 Erythranthe guttata HOM05D001960 ORTHO05D004348 4.3e-28 127.9 73 82.2
Hma1.2p1_0423F.1_g150240 Hydrangea macrophylla HOM05D001960 ORTHO05D004348 4.3e-28 127.9 73 80.8
CiPaw.04G019300 Carya illinoinensis HOM05D001960 ORTHO05D004348 5.6e-28 127.5 73 80.8
Eucgr.I01925 Eucalyptus grandis HOM05D001960 ORTHO05D004348 5.6e-28 127.5 73 80.8
Manes.17G022700 Manihot esculenta HOM05D001960 ORTHO05D004348 5.6e-28 127.5 73 82.2
Nitab4.5_0000098g0050 Nicotiana tabacum HOM05D001960 ORTHO05D004348 5.6e-28 127.5 73 80.8
Nitab4.5_0013371g0010 Nicotiana tabacum HOM05D001960 ORTHO05D004348 5.6e-28 127.5 73 80.8
TWI60G1096 Tripterygium wilfordii HOM05D001960 ORTHO05D004348 5.6e-28 127.5 73 80.8
TAR629G1922 Trochodendron aralioides HOM05D001960 ORTHO05D004348 5.6e-28 127.5 73 82.2
CiPaw.03G029300 Carya illinoinensis HOM05D001960 ORTHO05D004348 7.3e-28 127.1 73 79.5
Ca_04106_v3 Cicer arietinum L. HOM05D001960 ORTHO05D004348 7.3e-28 127.1 73 79.5
Ca_04115_v3 Cicer arietinum L. HOM05D001960 ORTHO05D004348 7.3e-28 127.1 73 79.5
Nn1g04484 Nelumbo nucifera HOM05D001960 ORTHO05D004348 7.3e-28 127.1 73 79.5
Oeu060924.1 Olea europaea HOM05D001960 ORTHO05D004348 7.3e-28 127.1 73 80.8
Sed0005459 Sechium edule HOM05D001960 ORTHO05D004348 7.3e-28 127.1 73 79.5
TWI32G1350 Tripterygium wilfordii HOM05D001960 ORTHO05D004348 7.3e-28 127.1 73 82.2
Glyma.09G240300 Glycine max HOM05D001960 ORTHO05D004348 9.5e-28 126.7 73 79.5
Glyma.18G256200 Glycine max HOM05D001960 ORTHO05D004348 9.5e-28 126.7 73 79.5
Lj1g0025494 Lotus japonicus HOM05D001960 ORTHO05D004348 9.5e-28 126.7 73 79.5
VMungo1383G3104 Vigna mungo HOM05D001960 ORTHO05D004348 9.5e-28 126.7 73 79.5
Nitab4.5_0000387g0100 Nicotiana tabacum HOM05D001960 ORTHO05D004348 1.2e-27 126.3 73 80.8
Phvul.008G043300 Phaseolus vulgaris HOM05D001960 ORTHO05D004348 2.1e-27 125.6 73 78.1
Nitab4.5_0002087g0050 Nicotiana tabacum HOM05D001960 ORTHO05D004348 2.8e-27 125.2 73 79.5
AT3G28715 Arabidopsis thaliana HOM05D001960 ORTHO05D004348 3.6e-27 124.8 73 78.1
BcaB07g30124 Brassica carinata HOM05D001960 ORTHO05D004348 3.6e-27 124.8 73 78.1
BcaC03g17524 Brassica carinata HOM05D001960 ORTHO05D004348 3.6e-27 124.8 73 78.1
A02p36010 Brassica napus HOM05D001960 ORTHO05D004348 3.6e-27 124.8 73 78.1
C02p54850 Brassica napus HOM05D001960 ORTHO05D004348 3.6e-27 124.8 73 78.1
BolC2t11546H Brassica oleracea HOM05D001960 ORTHO05D004348 3.6e-27 124.8 73 78.1
BraA02t08600Z Brassica rapa HOM05D001960 ORTHO05D004348 3.6e-27 124.8 73 78.1
CDE06G0436 Ceratophyllum demersum HOM05D001960 ORTHO05D004348 3.6e-27 124.8 81 72.8
Sc02g0007720 Simmondsia chinensis HOM05D001960 ORTHO05D004348 4.7e-27 124.4 81 70.4
Lalb_Chr02g0159521 Lupinus albus HOM05D001960 ORTHO05D004348 8.0e-27 123.6 73 78.1
Lalb_Chr02g0159571 Lupinus albus HOM05D001960 ORTHO05D004348 8.0e-27 123.6 73 78.1
Mapoly0006s0177 Marchantia polymorpha HOM05D001960 ORTHO05D004348 8.0e-27 123.6 81 69.1
Mapoly0140s0023 Marchantia polymorpha HOM05D001960 ORTHO05D004348 1.1e-26 123.2 81 70.4
Aa31LG9G1760 Aethionema arabicum HOM05D001960 ORTHO05D004348 1.4e-26 122.9 73 76.7
Cfa007519 Carpinus fangiana HOM05D001960 ORTHO05D004348 1.4e-26 122.9 73 78.1
Haze_14570 Corylus avellana HOM05D001960 ORTHO05D004348 1.4e-26 122.9 73 78.1
QL02p080802 Quercus lobata HOM05D001960 ORTHO05D004348 1.4e-26 122.9 73 76.7
CSS0026364 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 2.3e-26 122.1 67 85.1
Aa31LG2G4500 Aethionema arabicum HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
AL5G18390 Arabidopsis lyrata HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
AL5G18410 Arabidopsis lyrata HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
AT3G28710 Arabidopsis thaliana HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
BcaB04g19480 Brassica carinata HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
BcaC06g33635 Brassica carinata HOM05D001960 ORTHO05D008957 3.1e-26 121.7 73 76.7
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
A09p03760 Brassica napus HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
C09p03950 Brassica napus HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 3.1e-26 121.7 73 76.7
BolC9t53326H Brassica oleracea HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
BraA09t36012Z Brassica rapa HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
Carub.0005s0724 Capsella rubella HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
Carub.0005s0725 Capsella rubella HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
CARHR151640 Cardamine hirsuta HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
CDE04G1714 Ceratophyllum demersum HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 79.5
Thhalv10004497m.g Eutrema salsugineum HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
Thhalv10004498m.g Eutrema salsugineum HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
Lalb_Chr21g0318931 Lupinus albus HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
Sp2g17353 Schrenkiella parvula HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 76.7
SMO137G0011 Selaginella moellendorffii HOM05D001960 ORTHO05D004348 3.1e-26 121.7 73 75.3
Sp2g17360 Schrenkiella parvula HOM05D001960 ORTHO05D004348 4.0e-26 121.3 73 76.7
SHI04268 Sapria himalayana HOM05D001960 ORTHO05D004348 5.2e-26 120.9 73 76.7
CARHR151620 Cardamine hirsuta HOM05D001960 ORTHO05D004348 6.8e-26 120.6 61 88.5
Pp3c20_18840 Physcomitrium patens HOM05D001960 ORTHO05D004348 6.8e-26 120.6 81 69.1
AagrBONN_evm.TU.Sc2ySwM_340.257 Anthoceros agrestis HOM05D001960 ORTHO05D004348 1.5e-25 119.4 81 67.9
Zm00001eb160620 Zea mays HOM05D001960 ORTHO05D004348 2.6e-25 118.6 73 75.3
Atru.chr8.2689 Acer truncatum HOM05D001960 ORTHO05D004348 5.8e-25 117.5 67 82.1
Os01g0587000 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D004348 1.3e-24 116.3 73 72.6
RcHm_v2.0_Chr4g0431361 Rosa chinensis HOM05D001960 ORTHO05D004348 2.9e-24 115.2 62 83.9
CBR_g20991 Chara braunii HOM05D001960 ORTHO05D004348 8.3e-24 113.6 86 62.8
CBR_g20375 Chara braunii HOM05D001960 ORTHO05D004348 3.2e-23 111.7 81 63.0
RcHm_v2.0_Chr6g0297701 Rosa chinensis HOM05D001960 ORTHO05D004348 3.2e-23 111.7 61 82.0
TPR.G4258 Trifolium pratense HOM05D001960 ORTHO05D004348 4.1e-23 111.3 79 69.6
CSS0019148 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 1.7e-21 105.9 50 98.0
Dinv40238 Davidia involucrata HOM05D001960 ORTHO05D004348 3.3e-20 101.7 53 86.8
PRCOL_00003698 Prasinoderma coloniale HOM05D001960 ORTHO05D004348 5.6e-20 100.9 70 67.1
ATR0706G077 Amborella trichopoda HOM05D001960 ORTHO05D004348 3.6e-19 98.2 81 63.0
Cre03.g176250 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D004348 3.6e-19 98.2 90 51.1
Peaxi162Scf00061g02912 Petunia axillaris HOM05D001960 ORTHO05D004348 1.8e-18 95.9 58 75.9
BolC8t50104H Brassica oleracea HOM05D001960 ORTHO05D004348 5.1e-13 77.8 53 66.0
Haze_26095 Corylus avellana HOM05D001960 ORTHO05D004348 5.6e-12 74.3 60 51.7
C08p24880 Brassica napus HOM05D001960 ORTHO05D004348 7.3e-12 73.9 42 76.2
Cfa024469 Carpinus fangiana HOM05D001960 ORTHO05D004348 5.8e-09 64.3 71 46.5
Haze_26410 Corylus avellana HOM05D001960 ORTHO05D004348 1.3e-08 63.2 73 39.7
MCO01G616 Micromonas commoda HOM05D001960 ORTHO05D004348 4.6e-06 54.7 78 33.3


User provided reference genes

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