Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0141100 Rhododendron simsii HOM05D006018 ORTHO05D007545 1.5e-141 506.1 250 100.0
CSS0019594 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.7e-113 412.9 308 68.8
CSS0043702 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.7e-113 412.9 308 68.8
CSS0004952 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 2.5e-112 409.1 308 68.8
Dinv08587 Davidia involucrata HOM05D006018 ORTHO05D007545 4.6e-106 388.3 309 64.7
vmacro10321 Vaccinium macrocarpon HOM05D006018 ORTHO05D007545 1.9e-104 382.9 346 62.4
Lsat_1_v5_gn_2_105841 Lactuca sativa HOM05D006018 ORTHO05D007545 7.3e-104 380.9 288 68.1
Peaxi162Scf00725g00522 Petunia axillaris HOM05D006018 ORTHO05D007545 7.3e-104 380.9 302 63.9
Lj6g0008960 Lotus japonicus HOM05D006018 ORTHO05D007545 2.1e-103 379.4 308 63.6
Nn6g34699 Nelumbo nucifera HOM05D006018 ORTHO05D007545 2.8e-103 379.0 309 62.5
MD07G1062200 Malus domestica HOM05D006018 ORTHO05D007545 6.2e-103 377.9 308 61.0
Migut.F00847 Erythranthe guttata HOM05D006018 ORTHO05D007545 1.1e-102 377.1 304 63.5
CANSAT56G4342 Cannabis sativa HOM05D006018 ORTHO05D007545 3.1e-102 375.6 308 61.0
CiPaw.13G043500 Carya illinoinensis HOM05D006018 ORTHO05D007545 4.0e-102 375.2 309 64.1
PGSC0003DMG401001978 Solanum tuberosum HOM05D006018 ORTHO05D007545 6.8e-102 374.4 306 62.4
TWI38G2380 Tripterygium wilfordii HOM05D006018 ORTHO05D007545 6.8e-102 374.4 309 62.1
TAR623G0250 Trochodendron aralioides HOM05D006018 ORTHO05D007545 8.9e-102 374.0 308 62.3
MD02G1258600 Malus domestica HOM05D006018 ORTHO05D007545 1.2e-101 373.6 308 60.1
Prupe.2G072000 Prunus persica HOM05D006018 ORTHO05D007545 1.2e-101 373.6 308 60.7
SalBow3G1532 Salvia bowleyana HOM05D006018 ORTHO05D007545 1.2e-101 373.6 314 60.5
Nitab4.5_0007799g0030 Nicotiana tabacum HOM05D006018 ORTHO05D007545 2.0e-101 372.9 306 62.7
SGA_v2.0_scaffold2G01315 Striga asiatica HOM05D006018 ORTHO05D007545 5.8e-101 371.3 305 63.3
PSO339G6589 Papaver somniferum HOM05D006018 ORTHO05D007545 7.5e-101 370.9 309 60.5
PSO384G0865 Papaver somniferum HOM05D006018 ORTHO05D007545 7.5e-101 370.9 309 60.5
Aqoxy1G00667 Aquilegia oxysepala HOM05D006018 ORTHO05D007545 1.3e-100 370.2 310 61.6
Ca_12272_v3 Cicer arietinum L. HOM05D006018 ORTHO05D007545 1.7e-100 369.8 309 62.5
CAN.G143.25 Capsicum annuum HOM05D006018 ORTHO05D007545 4.9e-100 368.2 307 60.9
ECA238G1473 Erigeron canadensis HOM05D006018 ORTHO05D007545 8.3e-100 367.5 306 61.8
TPR.G19796 Trifolium pratense HOM05D006018 ORTHO05D007545 8.3e-100 367.5 309 61.5
Potri.010G242600 Populus trichocarpa HOM05D006018 ORTHO05D007545 2.4e-99 365.9 309 61.8
Medtr1g048370 Medicago truncatula HOM05D006018 ORTHO05D007545 3.2e-99 365.5 309 61.5
Psat6g049120 Pisum sativum HOM05D006018 ORTHO05D007545 5.4e-99 364.8 309 60.2
Sabra10G0189600 Salix brachista HOM05D006018 ORTHO05D007545 5.4e-99 364.8 311 60.8
Solyc11g006550.3 Solanum lycopersicum HOM05D006018 ORTHO05D007545 5.4e-99 364.8 306 61.1
Sopen11g002450 Solanum pennellii HOM05D006018 ORTHO05D007545 1.6e-98 363.2 306 61.1
RcHm_v2.0_Chr1g0325281 Rosa chinensis HOM05D006018 ORTHO05D007545 3.5e-98 362.1 303 60.1
Lalb_Chr19g0128951 Lupinus albus HOM05D006018 ORTHO05D007545 1.3e-97 360.1 310 60.3
Gorai.012G019800 Gossypium raimondii HOM05D006018 ORTHO05D007545 1.7e-97 359.8 310 60.6
Eucgr.J00283 Eucalyptus grandis HOM05D006018 ORTHO05D007545 2.3e-97 359.4 309 59.5
Gohir.D04G017100 Gossypium hirsutum HOM05D006018 ORTHO05D007545 2.3e-97 359.4 310 60.3
HanXRQChr02g0053551 Helianthus annuus HOM05D006018 ORTHO05D007545 3.0e-97 359.0 300 62.3
Gohir.A05G398800 Gossypium hirsutum HOM05D006018 ORTHO05D007545 3.9e-97 358.6 310 60.3
COL.COLO4_07822 Corchorus olitorius HOM05D006018 ORTHO05D007545 5.1e-97 358.2 313 61.3
Thecc.10G116100 Theobroma cacao HOM05D006018 ORTHO05D007545 8.6e-97 357.5 310 61.0
PGR044G0766 Punica granatum HOM05D006018 ORTHO05D007545 1.5e-96 356.7 310 59.4
THA.LOC104823771 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 1.5e-96 356.7 310 59.4
Cc02_g09390 Coffea canephora HOM05D006018 ORTHO05D007545 2.5e-96 355.9 304 60.5
MSTRG.9035 Avicennia marina HOM05D006018 ORTHO05D007545 3.3e-96 355.5 304 59.9
FvH4_7g03231 Fragaria vesca HOM05D006018 ORTHO05D007545 3.3e-96 355.5 308 58.4
THA.LOC104801755 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 4.3e-96 355.1 310 60.0
GSVIVG01034634001 Vitis vinifera HOM05D006018 ORTHO05D007545 4.3e-96 355.1 310 59.4
arahy.Tifrunner.gnm1.ann1.QNY1I5 Arachis hypogaea HOM05D006018 ORTHO05D007545 5.6e-96 354.8 308 58.4
Cpa.g.sc54.21 Carica papaya HOM05D006018 ORTHO05D007545 7.3e-96 354.4 309 60.2
THA.LOC104804947 Tarenaya hassleriana HOM05D006018 ORTHO05D007545 7.3e-96 354.4 310 59.4
Manes.10G059900 Manihot esculenta HOM05D006018 ORTHO05D007545 1.6e-95 353.2 306 58.8
Duzib106G1265 Durio zibethinus HOM05D006018 ORTHO05D007545 2.1e-95 352.8 310 60.0
Carub.0002s0907 Capsella rubella HOM05D006018 ORTHO05D007545 1.4e-94 350.1 310 60.0
arahy.Tifrunner.gnm1.ann1.Z71440 Arachis hypogaea HOM05D006018 ORTHO05D007545 1.8e-94 349.7 308 58.8
AT2G26230 Arabidopsis thaliana HOM05D006018 ORTHO05D007545 3.1e-94 349.0 310 59.7
arahy.Tifrunner.gnm1.ann1.Z7U9ST Arachis hypogaea HOM05D006018 ORTHO05D007545 8.9e-94 347.4 316 57.3
CARHR103400 Cardamine hirsuta HOM05D006018 ORTHO05D007545 8.9e-94 347.4 310 58.7
CDE02G2990 Ceratophyllum demersum HOM05D006018 ORTHO05D007545 8.9e-94 347.4 304 58.2
Aa31LG2G1810 Aethionema arabicum HOM05D006018 ORTHO05D007545 1.2e-93 347.1 311 58.8
Nitab4.5_0001781g0180 Nicotiana tabacum HOM05D006018 ORTHO05D007545 1.2e-93 347.1 306 60.1
C07p13770 Brassica napus HOM05D006018 ORTHO05D007545 1.5e-93 346.7 305 59.0
AL1G64680 Arabidopsis lyrata HOM05D006018 ORTHO05D007545 2.0e-93 346.3 310 59.0
BolC7t41872H Brassica oleracea HOM05D006018 ORTHO05D007545 2.0e-93 346.3 305 59.0
BcaC06g35533 Brassica carinata HOM05D006018 ORTHO05D007545 3.4e-93 345.5 305 58.7
BraA07t28684Z Brassica rapa HOM05D006018 ORTHO05D007545 3.4e-93 345.5 310 59.0
FAN10G2047 Fragaria x ananassa HOM05D006018 ORTHO05D007545 3.4e-93 345.5 308 57.8
A07p08930 Brassica napus HOM05D006018 ORTHO05D007545 5.8e-93 344.7 304 59.2
VMungo0720G2948 Vigna mungo HOM05D006018 ORTHO05D007545 5.8e-93 344.7 303 57.1
Ciclev10016037m.g Citrus clementina HOM05D006018 ORTHO05D007545 9.9e-93 344.0 309 57.3
Glyma.20G072400 Glycine max HOM05D006018 ORTHO05D007545 9.9e-93 344.0 303 56.8
Thhalv10021194m.g Eutrema salsugineum HOM05D006018 ORTHO05D007545 1.3e-92 343.6 307 57.7
HPP92_027461 Vanilla planifolia HOM05D006018 ORTHO05D007545 2.9e-92 342.4 272 62.9
Phvul.007G234300 Phaseolus vulgaris HOM05D006018 ORTHO05D007545 3.8e-92 342.0 303 56.1
AUR62034490 Chenopodium quinoa HOM05D006018 ORTHO05D007545 8.4e-92 340.9 304 57.9
arahy.Tifrunner.gnm1.ann1.V4FSHN Arachis hypogaea HOM05D006018 ORTHO05D007545 1.4e-91 340.1 324 54.9
Glyma.10G121524 Glycine max HOM05D006018 ORTHO05D007545 2.4e-91 339.3 303 55.4
BcaB06g26497 Brassica carinata HOM05D006018 ORTHO05D007545 4.1e-91 338.6 305 57.0
MELO3C012335.2 Cucumis melo HOM05D006018 ORTHO05D007545 4.1e-91 338.6 304 57.9
EL10Ac4g08718 Beta vulgaris HOM05D006018 ORTHO05D007545 7.1e-91 337.8 304 56.2
Sp3g21150 Schrenkiella parvula HOM05D006018 ORTHO05D007545 7.1e-91 337.8 305 57.0
SpUn0047_0030 Schrenkiella parvula HOM05D006018 ORTHO05D007545 7.1e-91 337.8 305 57.0
RcHm_v2.0_Chr1g0325311 Rosa chinensis HOM05D006018 ORTHO05D007545 1.6e-90 336.7 349 51.6
CsaV3_5G035210 Cucumis sativus L. HOM05D006018 ORTHO05D007545 3.5e-90 335.5 304 57.6
Hund06805 Selenicereus undatus HOM05D006018 ORTHO05D007545 2.3e-89 332.8 322 55.9
Ah.06g186820 Amaranthus hybridus HOM05D006018 ORTHO05D007545 1.9e-88 329.7 327 52.3
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 4.3e-88 328.6 276 62.3
Sed0014972 Sechium edule HOM05D006018 ORTHO05D007545 4.3e-88 328.6 305 56.7
unitig_899.g14460 Utricularia gibba HOM05D006018 ORTHO05D007545 4.3e-88 328.6 303 56.1
Haze_03464 Corylus avellana HOM05D006018 ORTHO05D007545 1.6e-87 326.6 387 49.9
FAN01G2803 Fragaria x ananassa HOM05D006018 ORTHO05D007545 1.4e-86 323.6 310 54.2
ATR0772G096 Amborella trichopoda HOM05D006018 ORTHO05D007545 1.8e-86 323.2 294 56.5
Lj3A923T60 Lonicera japonica HOM05D006018 ORTHO05D007545 6.9e-86 321.2 235 67.2
Atru.chr12.1071 Acer truncatum HOM05D006018 ORTHO05D007545 1.7e-84 316.6 275 57.1
Zm00001eb146880 Zea mays HOM05D006018 ORTHO05D007545 2.9e-84 315.8 306 52.0
DCAR_004552 Daucus carota HOM05D006018 ORTHO05D007545 3.8e-84 315.5 218 71.6
Actinidia34731 Actinidia chinensis HOM05D006018 ORTHO05D007545 1.7e-81 306.6 244 65.6
ClCG05G021930 Citrullus lanatus HOM05D006018 ORTHO05D007545 8.1e-79 297.7 305 53.4
Hma1.2p1_0381F.1_g139980 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 2.2e-76 289.7 240 63.8
Nn2g14297 Nelumbo nucifera HOM05D006018 ORTHO05D007545 2.4e-75 286.2 308 50.3
FAN03G1346 Fragaria x ananassa HOM05D006018 ORTHO05D007545 2.1e-74 283.1 284 52.8
Pp3c14_15560 Physcomitrium patens HOM05D006018 ORTHO05D007545 5.8e-69 265.0 292 46.6
SMO134G0227 Selaginella moellendorffii HOM05D006018 ORTHO05D007545 2.4e-67 259.6 287 46.3
Mapoly0079s0008 Marchantia polymorpha HOM05D006018 ORTHO05D007545 3.1e-62 242.7 283 48.1
AUR62034169 Chenopodium quinoa HOM05D006018 ORTHO05D007545 5.3e-62 241.9 241 52.3
AagrBONN_evm.TU.Sc2ySwM_344.453 Anthoceros agrestis HOM05D006018 ORTHO05D007545 2.6e-61 239.6 283 45.9
QL04p047894 Quercus lobata HOM05D006018 ORTHO05D007545 6.0e-58 228.4 231 55.4
Sc09g0005130 Simmondsia chinensis HOM05D006018 ORTHO05D007545 4.3e-56 222.2 228 53.5
CBR_g20325 Chara braunii HOM05D006018 ORTHO05D007545 6.3e-55 218.4 179 57.0
Os01g0865100 Oryza sativa ssp. japonica HOM05D006018 ORTHO05D007545 1.3e-52 210.7 158 61.4
Cre12.g504950 Chlamydomonas reinhardtii HOM05D006018 ORTHO05D007545 6.1e-50 201.8 282 39.7
PRCOL_00005817 Prasinoderma coloniale HOM05D006018 ORTHO05D007545 6.5e-36 155.2 318 33.3
MCO08G151 Micromonas commoda HOM05D006018 ORTHO05D007545 2.5e-35 153.3 281 33.5
Hma1.2p1_0381F.1_g139990 Hydrangea macrophylla HOM05D006018 ORTHO05D007545 2.1e-34 150.2 110 70.9
Oeu009248.1 Olea europaea HOM05D006018 ORTHO05D007545 1.4e-30 137.5 179 49.2
Cfa010524 Carpinus fangiana HOM05D006018 ORTHO05D007545 4.1e-30 136.0 110 64.5
arahy.Tifrunner.gnm1.ann1.WX42FR Arachis hypogaea HOM05D006018 ORTHO05D007545 1.3e-28 131.0 94 66.0
CSS0009212 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.3e-28 131.0 147 50.3
arahy.Tifrunner.gnm1.ann1.BN00BV Arachis hypogaea HOM05D006018 ORTHO05D007545 7.2e-27 125.2 95 63.2
CSS0030296 Camellia sinensis var. sinensis HOM05D006018 ORTHO05D007545 1.6e-26 124.0 145 49.7
Eucgr.J00287 Eucalyptus grandis HOM05D006018 ORTHO05D007545 1.0e-20 104.8 71 70.4
SEGI_30163 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 8.5e-20 101.7 70 65.7
FAN01G0562 Fragaria x ananassa HOM05D006018 ORTHO05D007545 4.7e-18 95.9 57 71.9
SEGI_33218 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 8.0e-18 95.1 64 67.2
SEGI_30780 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 4.0e-17 92.8 59 69.5
SEGI_29992 Sequoiadendron giganteum HOM05D006018 ORTHO05D007545 5.9e-13 79.0 52 71.2
DCAR_021657 Daucus carota HOM05D000572 ORTHO05D002399 9.2e-06 55.1 31 80.6


User provided reference genes

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