Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 1.6e-155 552.7 286 100.0
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 2.3e-106 389.4 287 69.0
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 3.1e-106 389.0 286 68.5
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 1.9e-103 379.8 286 68.2
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 8.6e-101 370.9 286 66.8
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 1.8e-98 363.2 287 65.9
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 6.8e-98 361.3 286 64.0
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 3.4e-97 359.0 288 65.3
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 2.2e-96 356.3 286 62.9
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 2.9e-96 355.9 288 64.2
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 1.4e-95 353.6 287 64.8
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 2.4e-95 352.8 288 63.9
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 1.2e-94 350.5 288 63.9
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 1.6e-94 350.1 286 61.2
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 2.1e-94 349.7 286 61.5
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 3.5e-94 349.0 288 63.2
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 4.6e-94 348.6 288 63.2
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 3.0e-93 345.9 288 62.5
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 3.0e-93 345.9 288 62.2
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 5.1e-93 345.1 288 63.2
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 8.6e-93 344.4 286 62.6
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 1.9e-92 343.2 286 61.5
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.9e-92 343.2 288 62.2
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 1.2e-91 340.5 286 60.8
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 2.8e-91 339.3 283 60.8
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 4.7e-91 338.6 290 62.8
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 4.7e-91 338.6 271 64.6
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 1.1e-90 337.4 286 60.5
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 1.8e-90 336.7 286 61.5
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 3.1e-90 335.9 287 64.1
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 5.2e-90 335.1 285 61.8
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 6.8e-90 334.7 286 61.9
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 1.5e-89 333.6 279 63.8
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 2.0e-89 333.2 288 60.1
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 5.8e-89 331.6 286 60.5
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 5.8e-89 331.6 265 62.6
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 9.9e-89 330.9 285 59.6
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 8.4e-88 327.8 242 68.2
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 1.4e-87 327.0 288 60.1
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 1.9e-87 326.6 288 59.4
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 5.4e-87 325.1 285 60.0
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 7.1e-87 324.7 283 59.0
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 9.3e-87 324.3 286 59.8
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 1.2e-86 323.9 287 59.6
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 6.0e-86 321.6 285 59.6
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 7.8e-86 321.2 287 60.6
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 7.8e-86 321.2 287 59.2
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 1.0e-85 320.9 296 57.1
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 1.3e-85 320.5 277 60.3
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 2.3e-85 319.7 277 59.9
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 3.0e-85 319.3 252 62.3
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 8.7e-85 317.8 296 56.8
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 2.5e-84 316.2 253 63.6
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 7.3e-84 314.7 287 60.3
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 7.3e-84 314.7 287 59.6
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 9.6e-84 314.3 287 59.6
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 1.3e-83 313.9 286 58.4
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 4.8e-83 312.0 287 56.8
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 8.1e-83 311.2 277 58.1
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 1.4e-82 310.5 288 60.4
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 2.4e-82 309.7 288 58.7
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 2.4e-82 309.7 284 58.5
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 3.1e-82 309.3 290 57.2
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 3.1e-82 309.3 240 64.2
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 4.0e-82 308.9 256 61.3
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 4.0e-82 308.9 286 57.3
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 5.3e-82 308.5 290 56.9
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 1.5e-81 307.0 288 59.7
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 2.6e-81 306.2 290 57.2
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 2.6e-81 306.2 240 62.5
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.6e-81 306.2 265 61.5
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 3.4e-81 305.8 297 54.2
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 7.6e-81 304.7 290 58.3
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 9.9e-81 304.3 288 57.3
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 9.9e-81 304.3 288 57.3
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 1.3e-80 303.9 237 64.1
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 8.4e-80 301.2 287 55.4
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 1.1e-79 300.8 287 58.9
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 2.4e-79 299.7 292 54.5
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 5.4e-79 298.5 287 56.8
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 7.1e-79 298.1 284 54.9
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 1.0e-77 294.3 257 59.5
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 2.3e-77 293.1 292 55.5
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 2.3e-77 293.1 269 59.1
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 1.1e-76 290.8 309 52.1
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 3.3e-76 289.3 220 63.2
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 4.3e-76 288.9 231 61.5
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 5.6e-76 288.5 283 55.8
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 2.8e-75 286.2 268 57.1
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 1.8e-74 283.5 247 61.5
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 1.8e-74 283.5 254 59.8
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 5.3e-74 282.0 260 58.8
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 2.6e-73 279.6 267 56.9
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 4.5e-73 278.9 269 56.5
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 7.6e-73 278.1 264 55.3
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 2.4e-71 273.1 237 60.3
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 2.7e-70 269.6 284 53.2
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.0e-69 267.7 288 53.5
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 3.9e-69 265.8 298 50.3
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 2.0e-65 253.4 231 53.7
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 4.5e-65 252.3 278 50.7
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 7.6e-65 251.5 222 55.9
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 1.2e-62 244.2 326 44.8
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 1.8e-61 240.4 175 69.1
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 4.3e-60 235.7 183 63.4
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 7.6e-57 224.9 237 49.8
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 1.9e-55 220.3 292 44.2
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 7.2e-55 218.4 168 61.9
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 1.2e-54 217.6 228 49.1
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.9e-52 210.3 265 47.9
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 3.3e-52 209.5 248 44.8
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 5.9e-49 198.7 185 53.5
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 8.5e-48 194.9 235 45.1
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 1.1e-44 184.5 167 56.9
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 4.4e-44 182.6 240 49.2
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 2.2e-40 170.2 226 46.5
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.1e-39 167.9 111 73.0
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 2.6e-33 146.7 224 38.8
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 1.4e-29 134.4 130 56.2
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 4.8e-27 125.9 112 55.4
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 7.7e-25 118.6 188 38.3
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 5.5e-23 112.5 137 46.0
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 8.0e-22 108.6 73 67.1
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 1.0e-21 108.2 80 60.0
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 1.8e-21 107.5 80 60.0
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 1.5e-20 104.4 80 58.8
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 2.2e-19 100.5 81 59.3
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 3.7e-19 99.8 68 73.5
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 1.2e-14 84.7 168 29.2
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 2.1e-14 84.0 102 47.1
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.8e-14 83.6 102 46.1
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.8e-14 83.6 102 46.1
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 8.0e-14 82.0 80 56.2
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.4e-13 81.3 102 45.1
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.4e-13 81.3 102 45.1
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 3.7e-11 73.2 197 28.9
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 3.1e-10 70.1 105 41.0
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 1.3e-08 64.7 52 59.6
Phvul.005G084700 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 1.3e-08 64.7 131 35.1
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 2.9e-08 63.5 58 55.2
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 8.6e-08 62.0 54 53.7


User provided reference genes

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