Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 0.0e+00 1531.9 837 100.0
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 6.3e-277 957.6 729 72.2
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 6.0e-219 765.0 789 57.7
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 1.2e-195 687.6 721 57.0
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 2.8e-147 526.9 575 56.2
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 1.7e-144 517.7 776 45.5
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 7.5e-129 465.7 766 42.4
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 1.7e-128 464.5 744 43.1
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 1.1e-124 451.8 758 42.6
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 2.1e-123 447.6 759 41.5
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 1.1e-122 445.3 757 43.5
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 2.3e-122 444.1 758 41.4
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 1.5e-121 441.4 756 41.7
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 1.5e-121 441.4 755 40.9
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 5.8e-121 439.5 655 44.3
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 5.8e-121 439.5 768 40.9
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 1.1e-119 435.3 748 42.1
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.1e-119 435.3 752 42.3
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.4e-119 434.9 750 42.1
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 3.2e-119 433.7 757 42.0
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 4.1e-119 433.3 772 41.7
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 5.4e-119 433.0 757 41.5
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 7.1e-119 432.6 756 39.7
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 1.2e-118 431.8 673 42.9
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 1.7e-117 427.9 739 41.4
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 3.9e-117 426.8 763 41.2
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 3.9e-117 426.8 670 42.1
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 1.1e-116 425.2 836 38.4
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 4.3e-116 423.3 745 40.3
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 4.3e-116 423.3 740 40.4
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 8.1e-115 419.1 751 41.5
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 1.4e-114 418.3 755 40.0
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 2.4e-114 417.5 745 40.4
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 3.1e-114 417.2 744 41.1
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 4.0e-114 416.8 754 40.1
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 2.6e-113 414.1 570 45.4
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 3.4e-113 413.7 721 41.6
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 9.9e-113 412.1 739 39.6
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 2.4e-111 407.5 485 52.2
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 5.6e-108 396.4 741 39.5
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 9.6e-108 395.6 711 40.5
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 1.3e-104 385.2 698 39.1
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 2.2e-104 384.4 773 38.4
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 2.2e-104 384.4 732 39.2
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 3.2e-103 380.6 719 39.8
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 1.2e-102 378.6 743 40.1
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 2.7e-102 377.5 421 53.9
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 1.3e-101 375.2 742 39.5
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 5.6e-100 369.8 743 38.1
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 1.6e-99 368.2 606 40.4
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 2.1e-99 367.9 439 49.2
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 2.8e-99 367.5 733 38.3
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 3.6e-99 367.1 796 36.1
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 1.8e-98 364.8 753 37.6
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 2.6e-97 360.9 804 36.1
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 9.9e-97 359.0 727 37.8
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 2.2e-96 357.8 738 36.7
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 1.4e-95 355.1 677 39.3
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 2.7e-94 350.9 677 40.2
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 3.0e-93 347.4 747 37.2
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 3.0e-93 347.4 702 37.6
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 1.3e-91 342.0 684 37.1
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 2.1e-91 341.3 528 45.1
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 4.8e-91 340.1 738 38.2
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 9.9e-89 332.4 731 37.9
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 1.3e-88 332.0 747 36.5
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 1.3e-88 332.0 734 36.0
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 3.8e-88 330.5 718 36.5
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 6.4e-88 329.7 727 36.2
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 6.4e-88 329.7 723 36.0
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 1.1e-87 328.9 737 36.4
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.0e-85 322.4 585 40.5
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 2.5e-84 317.8 531 40.7
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 3.1e-82 310.8 736 36.1
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 9.0e-82 309.3 734 35.6
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 1.2e-81 308.9 727 35.5
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 2.1e-78 298.1 453 43.7
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 6.0e-78 296.6 727 35.4
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 6.0e-78 296.6 881 34.1
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 1.3e-77 295.4 724 34.3
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 1.3e-77 295.4 730 34.4
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 3.9e-77 293.9 726 35.7
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 1.1e-76 292.4 733 34.8
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 2.5e-76 291.2 735 34.0
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 2.5e-76 291.2 735 34.0
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 4.3e-76 290.4 546 39.0
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 5.5e-71 273.5 744 33.6
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 4.7e-62 243.8 361 42.7
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 2.6e-60 238.0 431 42.0
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 6.7e-53 213.4 490 36.5
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 5.7e-52 210.3 572 34.3
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 1.3e-48 199.1 436 32.8
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 5.5e-47 193.7 364 38.5
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 9.4e-47 193.0 428 39.0
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 2.3e-45 188.3 387 38.0
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 6.8e-45 186.8 572 29.5
HPP92_006232 Vanilla planifolia HOM05D006063 ORTHO05D000023 2.0e-44 185.3 242 47.5
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 4.4e-44 184.1 407 34.6
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 8.3e-43 179.9 249 45.8
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 1.1e-42 179.5 641 28.1
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 5.5e-39 167.2 668 28.0
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 1.5e-36 159.1 324 38.6
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 2.0e-36 158.7 425 32.2
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 2.6e-36 158.3 781 25.9
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 9.8e-36 156.4 183 51.9
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 4.1e-34 151.0 479 31.1
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 9.1e-34 149.8 406 34.2
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 5.9e-33 147.1 376 34.8
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 6.8e-29 133.7 287 33.1
RcHm_v2.0_Chr3g0448831 Rosa chinensis HOM05D006063 ORTHO05D000023 1.1e-26 126.3 148 49.3
Dinv03778 Davidia involucrata HOM05D006063 ORTHO05D045100 1.8e-26 125.6 299 39.5
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 5.2e-21 107.5 263 35.4
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 1.5e-20 105.9 264 37.9
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 3.4e-20 104.8 80 65.0
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 2.4e-18 98.6 163 42.9
MBI18_g46978_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 6.0e-17 94.0 229 35.4
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 1.9e-15 89.0 117 41.9
C05p62930 Brassica napus HOM05D000005 ORTHO05D000294 8.9e-13 80.1 114 44.7
Hma1.2p1_0153F.1_g067860 Hydrangea macrophylla HOM05D006063 ORTHO05D045100 7.5e-12 77.0 210 34.8
DCAR_005530 Daucus carota HOM05D006063 ORTHO05D000023 1.4e-10 72.8 225 34.2
Dinv03782 Davidia involucrata HOM05D006063 ORTHO05D045148 6.6e-08 63.9 40 80.0
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 1.1e-07 63.2 48 66.7
TPR.G14651 Trifolium pratense HOM05D006063 ORTHO05D000023 7.3e-07 60.5 221 28.5


User provided reference genes

Program Settings