Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0135700 Rhododendron simsii HOM05D002854 ORTHO05D003051 2.6e-52 208.4 100 100.0
RhsimUnG0239800 Rhododendron simsii HOM05D002854 ORTHO05D003051 9.5e-47 189.9 96 92.7
Rhsim01G0036500 Rhododendron simsii HOM05D002854 ORTHO05D339759 1.9e-18 95.9 96 55.2
Actinidia30372 Actinidia chinensis HOM05D002854 ORTHO05D003051 4.6e-17 91.3 57 80.7
vmacro11619 Vaccinium macrocarpon HOM05D002854 ORTHO05D003051 1.3e-16 89.7 57 78.9
Actinidia10573 Actinidia chinensis HOM05D002854 ORTHO05D003051 6.7e-16 87.4 57 77.2
Ca_03501_v3 Cicer arietinum L. HOM05D002854 ORTHO05D003051 8.7e-16 87.0 58 74.1
Ca_28527_v3 Cicer arietinum L. HOM05D002854 ORTHO05D003051 8.7e-16 87.0 58 74.1
CSS0015002 Camellia sinensis var. sinensis HOM05D002854 ORTHO05D003051 1.1e-15 86.7 57 75.4
CSS0036877 Camellia sinensis var. sinensis HOM05D002854 ORTHO05D003051 1.1e-15 86.7 57 75.4
Cfa021906 Carpinus fangiana HOM05D002854 ORTHO05D003051 1.1e-15 86.7 57 77.2
Haze_09882 Corylus avellana HOM05D002854 ORTHO05D003051 1.1e-15 86.7 57 77.2
Oeu049427.2 Olea europaea HOM05D002854 ORTHO05D003051 1.1e-15 86.7 57 75.4
Medtr1g047990 Medicago truncatula HOM05D002854 ORTHO05D003051 1.5e-15 86.3 58 72.4
Rhsim06G0232900 Rhododendron simsii HOM05D002854 ORTHO05D003051 1.5e-15 86.3 57 77.2
Sopen02g026450 Solanum pennellii HOM05D002854 ORTHO05D003051 1.9e-15 85.9 57 73.7
PGSC0003DMG402029805 Solanum tuberosum HOM05D002854 ORTHO05D003051 1.9e-15 85.9 57 73.7
TPR.G27227 Trifolium pratense HOM05D002854 ORTHO05D003051 1.9e-15 85.9 58 74.1
COL.COLO4_07763 Corchorus olitorius HOM05D002854 ORTHO05D003051 2.5e-15 85.5 57 73.7
COL.COLO4_17407 Corchorus olitorius HOM05D002854 ORTHO05D003051 2.5e-15 85.5 57 73.7
Cpa.g.sc12.96 Carica papaya HOM05D002854 ORTHO05D003051 3.3e-15 85.1 57 73.7
Migut.M01616 Erythranthe guttata HOM05D002854 ORTHO05D003051 3.3e-15 85.1 57 71.9
Psat6g048680 Pisum sativum HOM05D002854 ORTHO05D003051 3.3e-15 85.1 58 72.4
Solyc12g015820.1 Solanum lycopersicum HOM05D002854 ORTHO05D003051 3.3e-15 85.1 57 71.9
Duzib170G1116 Durio zibethinus HOM05D002854 ORTHO05D003051 4.3e-15 84.7 57 71.9
Manes.05G202200 Manihot esculenta HOM05D002854 ORTHO05D003051 4.3e-15 84.7 57 71.9
TWI38G2036 Tripterygium wilfordii HOM05D002854 ORTHO05D003051 4.3e-15 84.7 57 71.9
Duzib213G0668 Durio zibethinus HOM05D002854 ORTHO05D003051 5.6e-15 84.3 57 71.9
Oeu053370.1 Olea europaea HOM05D002854 ORTHO05D003051 5.6e-15 84.3 57 71.9
QL08p002520 Quercus lobata HOM05D002854 ORTHO05D003051 5.6e-15 84.3 57 73.7
Ca_03488_v3 Cicer arietinum L. HOM05D002854 ORTHO05D003051 7.4e-15 84.0 58 72.4
Prupe.6G029600 Prunus persica HOM05D002854 ORTHO05D003051 7.4e-15 84.0 57 73.7
Solyc12g015910.1 Solanum lycopersicum HOM05D002854 ORTHO05D003051 7.4e-15 84.0 57 71.9
Sopen12g007810 Solanum pennellii HOM05D002854 ORTHO05D003051 7.4e-15 84.0 57 71.9
Atru.chr2.3884 Acer truncatum HOM05D002854 ORTHO05D003051 9.6e-15 83.6 57 73.7
Cc05_g15440 Coffea canephora HOM05D002854 ORTHO05D003051 9.6e-15 83.6 57 71.9
GSVIVG01014835001 Vitis vinifera HOM05D002854 ORTHO05D003051 9.6e-15 83.6 57 71.9
Aqoxy7G00765 Aquilegia oxysepala HOM05D002854 ORTHO05D003051 1.3e-14 83.2 57 73.7
MD11G1039000 Malus domestica HOM05D002854 ORTHO05D003051 1.6e-14 82.8 57 71.9
CiPaw.10G167200 Carya illinoinensis HOM05D002854 ORTHO05D003051 2.1e-14 82.4 57 70.2
Gohir.D05G386800 Gossypium hirsutum HOM05D002854 ORTHO05D003051 2.1e-14 82.4 57 70.2
Gorai.009G453500 Gossypium raimondii HOM05D002854 ORTHO05D003051 2.1e-14 82.4 57 70.2
Thecc.07G005100 Theobroma cacao HOM05D002854 ORTHO05D003051 2.1e-14 82.4 57 70.2
SGA_v2.0_scaffold168G38585 Striga asiatica HOM05D002854 ORTHO05D003051 2.8e-14 82.0 57 70.2
TAR624G0331 Trochodendron aralioides HOM05D002854 ORTHO05D003051 2.8e-14 82.0 57 70.2
CANSAT01G0752 Cannabis sativa HOM05D002854 ORTHO05D003051 3.7e-14 81.6 57 70.2
ClCG09G021620 Citrullus lanatus HOM05D002854 ORTHO05D003051 3.7e-14 81.6 57 70.2
Ciclev10008763m.g Citrus clementina HOM05D002854 ORTHO05D003051 3.7e-14 81.6 57 70.2
Potri.001G468300 Populus trichocarpa HOM05D002854 ORTHO05D003051 3.7e-14 81.6 57 70.2
Potri.011G165400 Populus trichocarpa HOM05D002854 ORTHO05D003051 3.7e-14 81.6 57 70.2
Sabra11G0140100 Salix brachista HOM05D002854 ORTHO05D003051 3.7e-14 81.6 57 70.2
Lj3g0013242 Lotus japonicus HOM05D002854 ORTHO05D003051 4.8e-14 81.3 57 68.4
SGA_v2.0_scaffold7G03530 Striga asiatica HOM05D002854 ORTHO05D003051 4.8e-14 81.3 57 70.2
CsaV3_7G021450 Cucumis sativus L. HOM05D002854 ORTHO05D003051 6.2e-14 80.9 57 70.2
Dinv15450 Davidia involucrata HOM05D002854 ORTHO05D003051 6.2e-14 80.9 57 70.2
Gohir.A02G114500 Gossypium hirsutum HOM05D002854 ORTHO05D003051 6.2e-14 80.9 57 68.4
Gorai.003G058300 Gossypium raimondii HOM05D002854 ORTHO05D003051 6.2e-14 80.9 57 68.4
Sabra16G0317500 Salix brachista HOM05D002854 ORTHO05D003051 8.1e-14 80.5 57 70.2
Nitab4.5_0000134g0070 Nicotiana tabacum HOM05D002854 ORTHO05D003051 1.1e-13 80.1 52 73.1
Sabra03G0025300 Salix brachista HOM05D002854 ORTHO05D003051 1.4e-13 79.7 60 65.0
SalBow3G3879 Salvia bowleyana HOM05D002854 ORTHO05D003051 1.4e-13 79.7 57 66.7
Sed0026831 Sechium edule HOM05D002854 ORTHO05D003051 1.4e-13 79.7 57 68.4
Gohir.D03G055500 Gossypium hirsutum HOM05D002854 ORTHO05D003051 1.8e-13 79.3 57 66.7
Hma1.2p1_2203F.1_g317080 Hydrangea macrophylla HOM05D002854 ORTHO05D003051 1.8e-13 79.3 52 73.1
SalBow7G2944 Salvia bowleyana HOM05D002854 ORTHO05D003051 1.8e-13 79.3 57 66.7
DCAR_013778 Daucus carota HOM05D002854 ORTHO05D003051 2.4e-13 79.0 57 66.7
RcHm_v2.0_Chr5g0075351 Rosa chinensis HOM05D002854 ORTHO05D003051 2.4e-13 79.0 57 66.7
THA.LOC104813459 Tarenaya hassleriana HOM05D002854 ORTHO05D003051 2.4e-13 79.0 57 66.7
unitig_21.g20271 Utricularia gibba HOM05D002854 ORTHO05D003051 2.4e-13 79.0 57 66.7
Nitab4.5_0000598g0090 Nicotiana tabacum HOM05D002854 ORTHO05D003051 3.1e-13 78.6 52 71.2
Rhsim04G0009700 Rhododendron simsii HOM05D002854 ORTHO05D003051 3.1e-13 78.6 57 68.4
THA.LOC104817723 Tarenaya hassleriana HOM05D002854 ORTHO05D003051 3.1e-13 78.6 57 68.4
Eucgr.F02016 Eucalyptus grandis HOM05D002854 ORTHO05D003051 4.0e-13 78.2 57 68.4
Thhalv10027252m.g Eutrema salsugineum HOM05D002854 ORTHO05D003051 4.0e-13 78.2 57 64.9
Aa31LG5G11870 Aethionema arabicum HOM05D002854 ORTHO05D003051 5.3e-13 77.8 57 66.7
Glyma.07G062400 Glycine max HOM05D002854 ORTHO05D003051 5.3e-13 77.8 57 66.7
PGR083G1211 Punica granatum HOM05D002854 ORTHO05D003051 5.3e-13 77.8 57 68.4
AT4G26500 Arabidopsis thaliana HOM05D002854 ORTHO05D003051 6.9e-13 77.4 57 64.9
CARHR234090 Cardamine hirsuta HOM05D002854 ORTHO05D003051 6.9e-13 77.4 57 64.9
Nn2g12752 Nelumbo nucifera HOM05D002854 ORTHO05D003051 6.9e-13 77.4 57 68.4
Phvul.010G102200 Phaseolus vulgaris HOM05D002854 ORTHO05D003051 1.2e-12 76.6 57 64.9
VMungo0331G0648 Vigna mungo HOM05D002854 ORTHO05D003051 1.2e-12 76.6 57 64.9
AL7G26420 Arabidopsis lyrata HOM05D002854 ORTHO05D003051 1.5e-12 76.3 57 63.2
BcaC09g50717 Brassica carinata HOM05D002854 ORTHO05D003051 1.5e-12 76.3 57 63.2
A01p17770 Brassica napus HOM05D002854 ORTHO05D003051 1.5e-12 76.3 57 63.2
C01p22490 Brassica napus HOM05D002854 ORTHO05D003051 1.5e-12 76.3 57 63.2
BolC1t02180H Brassica oleracea HOM05D002854 ORTHO05D003051 1.5e-12 76.3 57 63.2
Carub.0007s1438 Capsella rubella HOM05D002854 ORTHO05D003051 1.5e-12 76.3 57 63.2
Sp7g24460 Schrenkiella parvula HOM05D002854 ORTHO05D003051 1.5e-12 76.3 57 64.9
TWI39G1293 Tripterygium wilfordii HOM05D002854 ORTHO05D003051 1.5e-12 76.3 52 69.2
FvH4_3g42140 Fragaria vesca HOM05D002854 ORTHO05D003051 2.0e-12 75.9 57 64.9
FAN11G1641 Fragaria x ananassa HOM05D000722 ORTHO05D003051 2.0e-12 75.9 57 64.9
FAN16G0314 Fragaria x ananassa HOM05D000722 ORTHO05D003051 2.0e-12 75.9 57 64.9
VMungo0331G1734 Vigna mungo HOM05D002854 ORTHO05D003051 2.0e-12 75.9 57 64.9
FAN21G1355 Fragaria x ananassa HOM05D000722 ORTHO05D003051 2.6e-12 75.5 57 64.9
Nitab4.5_0010989g0010 Nicotiana tabacum HOM05D002854 ORTHO05D003051 2.6e-12 75.5 52 69.2
Sabra04G0001900 Salix brachista HOM05D002854 ORTHO05D003051 2.6e-12 75.5 57 66.7
Gohir.A04G002600 Gossypium hirsutum HOM05D002854 ORTHO05D003051 3.4e-12 75.1 57 64.9
BcaNung02408 Brassica carinata HOM05D002854 ORTHO05D003051 4.5e-12 74.7 57 63.2
ECA236G2755 Erigeron canadensis HOM05D002854 ORTHO05D003051 4.5e-12 74.7 59 67.8
Peaxi162Scf00006g00715 Petunia axillaris HOM05D002854 ORTHO05D003051 4.5e-12 74.7 58 65.5
arahy.Tifrunner.gnm1.ann1.542A2E Arachis hypogaea HOM05D002854 ORTHO05D003051 5.8e-12 74.3 61 63.9
CAN.G222.157 Capsicum annuum HOM05D002854 ORTHO05D003051 5.8e-12 74.3 58 65.5
PSO675G2695 Papaver somniferum HOM05D002854 ORTHO05D003051 5.8e-12 74.3 58 67.2
Phvul.010G105600 Phaseolus vulgaris HOM05D002854 ORTHO05D003051 5.8e-12 74.3 57 63.2
SHI08463 Sapria himalayana HOM05D002854 ORTHO05D003051 5.8e-12 74.3 52 69.2
Lsat_1_v5_gn_7_116481 Lactuca sativa HOM05D002854 ORTHO05D003051 7.6e-12 73.9 58 69.0
Lalb_Chr04g0259341 Lupinus albus HOM05D002854 ORTHO05D003051 1.0e-11 73.6 58 65.5
PSO541G3812 Papaver somniferum HOM05D002854 ORTHO05D003051 1.0e-11 73.6 58 65.5
ATR0751G096 Amborella trichopoda HOM05D002854 ORTHO05D003051 2.2e-11 72.4 57 63.2
arahy.Tifrunner.gnm1.ann1.SCBD8U Arachis hypogaea HOM05D002854 ORTHO05D003051 2.2e-11 72.4 61 62.3
CDE10G0484 Ceratophyllum demersum HOM05D001287 ORTHO05D001226 2.2e-11 72.4 57 59.6
CDE10G0817 Ceratophyllum demersum HOM05D001287 ORTHO05D001226 2.2e-11 72.4 57 59.6
MBI15_g19867_MAGBIO Magnolia biondii HOM05D002854 ORTHO05D003051 2.9e-11 72.0 57 61.4
HanXRQChr03g0080451 Helianthus annuus HOM05D002854 ORTHO05D003051 3.8e-11 71.6 59 64.4
Sc03g0011680 Simmondsia chinensis HOM05D002854 ORTHO05D003051 1.1e-10 70.1 57 59.6
Lsat_1_v5_gn_9_89180 Lactuca sativa HOM05D002854 ORTHO05D003051 1.4e-10 69.7 59 61.0
BcaC06g32740 Brassica carinata HOM05D002854 ORTHO05D003051 1.9e-10 69.3 53 67.9
ECA240G1791 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.2e-10 68.6 59 59.3
SEGI_08239 Sequoiadendron giganteum HOM05D002854 ORTHO05D003051 5.5e-10 67.8 68 55.9
SEGI_41013 Sequoiadendron giganteum HOM05D002854 ORTHO05D003051 5.5e-10 67.8 68 55.9
EL10Ac4g09787 Beta vulgaris HOM05D002854 ORTHO05D003051 6.0e-09 64.3 56 60.7
Cpa.g.sc3.441 Carica papaya HOM05D002854 ORTHO05D003051 6.0e-09 64.3 57 61.4
BraA01t01732Z Brassica rapa HOM05D002854 ORTHO05D003051 1.0e-08 63.5 50 60.0
Mapoly0102s0027 Marchantia polymorpha HOM05D002854 ORTHO05D003051 1.3e-08 63.2 57 59.6
Ah.03g134530 Amaranthus hybridus HOM05D002854 ORTHO05D003051 6.7e-08 60.8 60 53.3
SMO351G0259 Selaginella moellendorffii HOM05D002854 ORTHO05D003051 1.3e-06 56.6 57 50.9


User provided reference genes

Program Settings