Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0131500 Rhododendron simsii HOM05D000003 ORTHO05D000004 7.1e-95 350.5 169 100.0
RhsimUnG0236900 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.2e-25 120.6 101 54.5
Rhsim07G0162700 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.5e-23 113.6 157 37.6
Rhsim05G0174000 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.2e-18 95.9 88 52.3
Rhsim01G0148400 Rhododendron simsii HOM05D001793 ORTHO05D001938 9.2e-18 94.4 93 49.5
Rhsim02G0110700 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.8e-14 82.8 98 45.9
CSS0001686 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 6.2e-14 81.6 91 44.0
Rhsim13G0061700 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.4e-13 80.5 97 37.1
RhsimUnG0247100 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.4e-13 80.5 98 37.8
CSS0008839 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.1e-13 79.3 91 42.9
Rhsim04G0211900 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.0e-13 79.0 98 45.9
RhsimUnG0169300 Rhododendron simsii HOM05D000003 ORTHO05D000004 8.9e-13 77.8 94 41.5
Rhsim02G0165900 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.4e-12 75.9 68 51.5
CSS0044445 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000004 9.9e-12 74.3 91 40.7
QL02p011410 Quercus lobata HOM05D000003 ORTHO05D000004 9.9e-12 74.3 166 30.1
CSS0027596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.2e-11 73.2 93 41.9
Rhsim01G0174200 Rhododendron simsii HOM05D000003 ORTHO05D000004 8.3e-11 71.2 96 36.5
Rhsim11G0146500 Rhododendron simsii HOM05D000003 ORTHO05D000004 8.3e-11 71.2 95 35.8
Rhsim05G0208700 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.4e-10 70.5 102 37.3
CSS0036610 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 3.2e-10 69.3 92 38.0
Rhsim04G0100600 Rhododendron simsii HOM05D000003 ORTHO05D000004 5.4e-10 68.6 91 37.4
Atru.chr11.973 Acer truncatum HOM05D000003 ORTHO05D000004 9.2e-10 67.8 97 39.2
CSS0006002 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 9.2e-10 67.8 91 39.6
QL03p033496 Quercus lobata HOM05D000003 ORTHO05D000004 9.2e-10 67.8 104 32.7
CSS0027326 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.2e-09 67.4 92 40.2
COL.COLO4_15019 Corchorus olitorius HOM05D000003 ORTHO05D000004 1.2e-09 67.4 87 40.2
Rhsim06G0103400 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.6e-09 67.0 91 37.4
Rhsim13G0004500 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.6e-09 67.0 91 37.4
CANSAT54G1809 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-09 66.6 87 37.9
Rhsim01G0076000 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.1e-09 66.6 96 36.5
Rhsim11G0009800 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.7e-09 66.2 91 38.5
Atru.chr6.785 Acer truncatum HOM05D000003 ORTHO05D000004 3.5e-09 65.9 95 38.9
CiPaw.07G081700 Carya illinoinensis HOM05D000003 ORTHO05D000004 4.6e-09 65.5 89 38.2
Rhsim01G0064200 Rhododendron simsii HOM05D008183 ORTHO05D007254 4.6e-09 65.5 91 36.3
Rhsim04G0060300 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.6e-09 65.5 99 37.4
Nn1g09365 Nelumbo nucifera HOM05D000003 ORTHO05D000004 6.0e-09 65.1 91 37.4
QL03p052584 Quercus lobata HOM05D000003 ORTHO05D000004 6.0e-09 65.1 91 33.0
RhsimUnG0010200 Rhododendron simsii HOM05D000003 ORTHO05D000004 6.0e-09 65.1 92 37.0
CANSAT01G1968 Cannabis sativa HOM05D000003 ORTHO05D000004 7.8e-09 64.7 86 40.7
CANSAT54G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-08 64.3 135 29.6
Nn4g22089 Nelumbo nucifera HOM05D000003 ORTHO05D000004 1.0e-08 64.3 91 36.3
Potri.004G015067 Populus trichocarpa HOM05D000003 ORTHO05D000004 1.0e-08 64.3 97 37.1
Atru.chr10.1987 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-08 63.9 95 37.9
Atru.chr6.266 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-08 63.9 93 39.8
FvH4_4g08194 Fragaria vesca HOM05D000003 ORTHO05D000004 1.3e-08 63.9 91 38.5
FvH4_5g08581 Fragaria vesca HOM05D000003 ORTHO05D000004 1.3e-08 63.9 98 35.7
Rhsim08G0124600 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.3e-08 63.9 99 34.3
TPR.G7198 Trifolium pratense HOM05D000003 ORTHO05D000004 1.3e-08 63.9 98 32.7
COL.COLO4_20252 Corchorus olitorius HOM05D000003 ORTHO05D007254 1.7e-08 63.5 83 36.1
EL10Ac1g01349 Beta vulgaris HOM05D003468 ORTHO05D002806 2.3e-08 63.2 104 30.8
CiPaw.15G073500 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.3e-08 63.2 90 35.6
FvH4_3g20371 Fragaria vesca HOM05D000003 ORTHO05D000004 2.3e-08 63.2 92 39.1
TAR228G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000004 2.3e-08 63.2 100 33.0
BcaC08g47082 Brassica carinata HOM05D000496 ORTHO05D000411 3.0e-08 62.8 92 39.1
Atru.chr5.2472 Acer truncatum HOM05D000003 ORTHO05D000004 3.9e-08 62.4 93 39.8
Cc11_g12030 Coffea canephora HOM05D000003 ORTHO05D000004 3.9e-08 62.4 91 37.4
Atru.chr12.2439 Acer truncatum HOM05D000003 ORTHO05D000004 5.1e-08 62.0 97 37.1
CSS0035557 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000004 5.1e-08 62.0 85 38.8
CANSAT56G0342 Cannabis sativa HOM05D000003 ORTHO05D000167 5.1e-08 62.0 40 65.0
CANSAT78G1794 Cannabis sativa HOM05D000003 ORTHO05D000004 5.1e-08 62.0 83 43.4
Manes.06G094851 Manihot esculenta HOM05D000003 ORTHO05D000004 5.1e-08 62.0 87 37.9
QL04p082656 Quercus lobata HOM05D000003 ORTHO05D000167 5.1e-08 62.0 92 34.8
Rhsim13G0170800 Rhododendron simsii HOM05D000101 ORTHO05D000089 5.1e-08 62.0 89 37.1
Atru.chr2.108 Acer truncatum HOM05D000003 ORTHO05D000004 6.6e-08 61.6 93 34.4
Atru.chr3.3937 Acer truncatum HOM05D000003 ORTHO05D000004 6.6e-08 61.6 88 43.2
Atru.chr4.50 Acer truncatum HOM05D000003 ORTHO05D000004 6.6e-08 61.6 97 39.2
AUR62004730 Chenopodium quinoa HOM05D000482 ORTHO05D000349 6.6e-08 61.6 92 32.6
COL.COLO4_08607 Corchorus olitorius HOM05D000003 ORTHO05D000004 6.6e-08 61.6 98 37.8
MD08G1205700 Malus domestica HOM05D000003 ORTHO05D000004 6.6e-08 61.6 95 36.8
QL05p058297 Quercus lobata HOM05D008329 ORTHO05D010502 6.6e-08 61.6 101 35.6
QL08p018981 Quercus lobata HOM05D000003 ORTHO05D000004 6.6e-08 61.6 143 30.8
Atru.chr1.2568 Acer truncatum HOM05D000003 ORTHO05D000004 8.6e-08 61.2 93 39.8
Atru.chr1.2596 Acer truncatum HOM05D000003 ORTHO05D000004 8.6e-08 61.2 93 36.6
QL11p030351 Quercus lobata HOM05D000003 ORTHO05D000004 8.6e-08 61.2 92 39.1
Rhsim03G0157700 Rhododendron simsii HOM05D000003 ORTHO05D000004 8.6e-08 61.2 77 40.3
CANSAT78G2022 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-07 60.8 97 33.0
CiPaw.06G052300 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.1e-07 60.8 99 35.4
Rhsim08G0178900 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.1e-07 60.8 77 39.0
Atru.chr2.2371 Acer truncatum HOM05D000003 ORTHO05D000004 1.5e-07 60.5 102 30.4
Rhsim07G0154700 Rhododendron simsii HOM05D001582 ORTHO05D001598 1.5e-07 60.5 95 34.7
RcHm_v2.0_Chr7g0208481 Rosa chinensis HOM05D000003 ORTHO05D000004 1.5e-07 60.5 100 35.0
AUR62002762 Chenopodium quinoa HOM05D001201 ORTHO05D001100 1.9e-07 60.1 93 34.4
TPR.G37077 Trifolium pratense HOM05D000003 ORTHO05D000004 1.9e-07 60.1 90 31.1
CANSAT35G1604 Cannabis sativa HOM05D000003 ORTHO05D000004 2.5e-07 59.7 89 37.1
CiPaw.03G196400 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.5e-07 59.7 89 33.7
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 2.5e-07 59.7 91 35.2
RcHm_v2.0_Chr1g0344541 Rosa chinensis HOM05D000003 ORTHO05D000004 2.5e-07 59.7 91 37.4
AUR62015281 Chenopodium quinoa HOM05D000003 ORTHO05D000004 4.3e-07 58.9 95 32.6
AUR62038357 Chenopodium quinoa HOM05D000003 ORTHO05D000004 4.3e-07 58.9 96 35.4
AUR62041189 Chenopodium quinoa HOM05D000003 ORTHO05D000004 4.3e-07 58.9 99 31.3
FvH4_3g26221 Fragaria vesca HOM05D000003 ORTHO05D000004 4.3e-07 58.9 91 39.6
FvH4_5g12241 Fragaria vesca HOM05D000003 ORTHO05D000004 4.3e-07 58.9 91 36.3
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 4.3e-07 58.9 92 35.9
RcHm_v2.0_Chr5g0040851 Rosa chinensis HOM05D000003 ORTHO05D000004 4.3e-07 58.9 91 37.4
QL02p097725 Quercus lobata HOM05D000003 ORTHO05D000004 5.6e-07 58.5 100 32.0
CANSAT54G0625 Cannabis sativa HOM05D000003 ORTHO05D000004 7.3e-07 58.2 167 25.1
CANSAT64G0477 Cannabis sativa HOM05D000003 ORTHO05D000004 9.5e-07 57.8 90 38.9
CANSAT64G2879 Cannabis sativa HOM05D000003 ORTHO05D000004 9.5e-07 57.8 93 34.4
AUR62024428 Chenopodium quinoa HOM05D000003 ORTHO05D000004 9.5e-07 57.8 102 33.3
FvH4_5g04240 Fragaria vesca HOM05D000003 ORTHO05D000004 9.5e-07 57.8 88 38.6
Rhsim04G0176200 Rhododendron simsii HOM05D000003 ORTHO05D000004 9.5e-07 57.8 89 36.0
TWI31G0724 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 9.5e-07 57.8 91 34.1
vmacro00928 Vaccinium macrocarpon HOM05D000042 ORTHO05D008481 9.5e-07 57.8 86 40.7
Atru.chr13.2074 Acer truncatum HOM05D000003 ORTHO05D000167 1.2e-06 57.4 90 38.9
CANSAT21G1369 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-06 57.4 86 37.2
CANSAT25G2443 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-06 57.4 87 37.9
CANSAT54G1058 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-06 57.4 91 34.1
CANSAT64G1779 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-06 57.4 91 35.2
CiPaw.01G080900 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.2e-06 57.4 92 32.6
CiPaw.08G120100 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.2e-06 57.4 87 34.5
QL10p051120 Quercus lobata HOM05D000005 ORTHO05D000012 1.2e-06 57.4 95 35.8
Atru.chr13.1500 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 57.0 91 34.1
CiPaw.06G023000 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.6e-06 57.0 90 34.4
CiPaw.16G041700 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.6e-06 57.0 87 35.6
RcHm_v2.0_Chr1g0340391 Rosa chinensis HOM05D000003 ORTHO05D000004 1.6e-06 57.0 89 37.1
TPR.G22130 Trifolium pratense HOM05D000003 ORTHO05D000004 1.6e-06 57.0 93 33.3
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 1.6e-06 57.0 52 51.9
Aa31LG2G16100 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.1e-06 56.6 96 33.3
EL10Ac6g14227 Beta vulgaris HOM05D000003 ORTHO05D000004 2.1e-06 56.6 99 32.3
BolC5t31874H Brassica oleracea HOM05D001350 ORTHO05D001091 2.1e-06 56.6 96 31.2
CANSAT80G0814 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-06 56.6 41 56.1
COL.COLO4_25140 Corchorus olitorius HOM05D000003 ORTHO05D017879 2.1e-06 56.6 85 35.3
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 2.1e-06 56.6 99 35.4
SGA_v2.0_scaffold191G40503 Striga asiatica HOM05D000003 ORTHO05D000004 2.1e-06 56.6 108 37.0
Atru.chr6.710 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-06 56.2 96 30.2
CANSAT64G1526 Cannabis sativa HOM05D000003 ORTHO05D000004 2.8e-06 56.2 90 40.0
CiPaw.05G068400 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.8e-06 56.2 87 36.8
Prupe.3G135000 Prunus persica HOM05D000003 ORTHO05D000004 2.8e-06 56.2 87 37.9
Prupe.6G353900 Prunus persica HOM05D000003 ORTHO05D000004 2.8e-06 56.2 89 37.1
QL02p061509 Quercus lobata HOM05D000003 ORTHO05D000004 2.8e-06 56.2 89 36.0
QL09p000395 Quercus lobata HOM05D000003 ORTHO05D000004 2.8e-06 56.2 93 32.3
QL10p036891 Quercus lobata HOM05D000003 ORTHO05D000004 2.8e-06 56.2 89 33.7
Atru.chr11.920 Acer truncatum HOM05D000003 ORTHO05D000004 3.6e-06 55.8 97 36.1
Atru.chr12.386 Acer truncatum HOM05D000003 ORTHO05D000004 3.6e-06 55.8 92 38.0
Atru.chr8.1381 Acer truncatum HOM05D000003 ORTHO05D000004 3.6e-06 55.8 105 34.3
Atru.chr8.816 Acer truncatum HOM05D000003 ORTHO05D000004 3.6e-06 55.8 96 31.2
CANSAT56G4406 Cannabis sativa HOM05D000003 ORTHO05D000004 3.6e-06 55.8 87 36.8
AUR62015302 Chenopodium quinoa HOM05D000003 ORTHO05D000004 3.6e-06 55.8 94 29.8
Aa31sc25G170 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.7e-06 55.5 108 31.5
CANSAT35G0498 Cannabis sativa HOM05D000003 ORTHO05D000004 4.7e-06 55.5 87 39.1
CANSAT64G1154 Cannabis sativa HOM05D000003 ORTHO05D000004 4.7e-06 55.5 86 37.2
CANSAT78G0646 Cannabis sativa HOM05D000003 ORTHO05D000004 4.7e-06 55.5 86 37.2
CiPaw.09G167800 Carya illinoinensis HOM05D000003 ORTHO05D000004 4.7e-06 55.5 98 33.7
FvH4_4g13062 Fragaria vesca HOM05D000003 ORTHO05D011454 4.7e-06 55.5 101 31.7
QL04p056296 Quercus lobata HOM05D000003 ORTHO05D000004 4.7e-06 55.5 99 30.3
Rhsim13G0172400 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.7e-06 55.5 65 49.2
Actinidia31222 Actinidia chinensis HOM05D000003 ORTHO05D000006 6.2e-06 55.1 40 65.0
CSS0031820 Camellia sinensis var. sinensis HOM05D000698 ORTHO05D000004 6.2e-06 55.1 90 33.3
CANSAT01G2388 Cannabis sativa HOM05D000003 ORTHO05D000004 6.2e-06 55.1 85 35.3
CANSAT21G2622 Cannabis sativa HOM05D000003 ORTHO05D000004 6.2e-06 55.1 99 29.3
CANSAT56G2394 Cannabis sativa HOM05D000003 ORTHO05D000004 6.2e-06 55.1 91 34.1
CANSAT78G0208 Cannabis sativa HOM05D000003 ORTHO05D000004 6.2e-06 55.1 89 33.7
LjContig00408g0023232 Lotus japonicus HOM05D000003 ORTHO05D000004 6.2e-06 55.1 90 33.3
QL05p078226 Quercus lobata HOM05D000003 ORTHO05D000004 6.2e-06 55.1 94 26.6
Atru.chr1.1693 Acer truncatum HOM05D000003 ORTHO05D000004 8.1e-06 54.7 104 28.8
Aa31sc466G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.1e-06 54.7 92 33.7
CiPaw.14G039600 Carya illinoinensis HOM05D000003 ORTHO05D000004 8.1e-06 54.7 100 28.0
ClCG10G012420 Citrullus lanatus HOM05D000003 ORTHO05D000004 8.1e-06 54.7 86 34.9
PSO063G4669 Papaver somniferum HOM05D000003 ORTHO05D000004 8.1e-06 54.7 93 34.4
PSO223G0068 Papaver somniferum HOM05D001060 ORTHO05D000905 8.1e-06 54.7 96 36.5
QL11p037218 Quercus lobata HOM05D000130 ORTHO05D000004 8.1e-06 54.7 95 35.8


User provided reference genes

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