Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 0.0e+00 1303.1 661 100.0
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 0.0e+00 1093.6 654 84.9
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 1.0e-242 843.6 647 65.1
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 3.4e-233 812.0 661 62.2
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 1.7e-221 773.1 658 60.0
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 1.1e-220 770.4 658 59.7
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 1.4e-218 763.5 649 58.9
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 1.5e-217 760.0 656 59.1
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 2.2e-216 756.1 659 58.4
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 2.2e-216 756.1 653 58.3
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 2.9e-216 755.7 651 59.6
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 3.2e-215 752.3 650 59.4
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 2.1e-214 749.6 651 58.7
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 3.5e-214 748.8 651 59.4
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 3.9e-213 745.3 653 59.7
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 6.6e-213 744.6 651 58.4
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 1.5e-212 743.4 658 58.2
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.5e-212 743.4 658 58.2
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 9.6e-212 740.7 659 57.8
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 2.1e-211 739.6 651 59.0
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 3.6e-211 738.8 658 57.6
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 4.8e-211 738.4 651 58.4
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 6.9e-210 734.6 652 57.4
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 2.2e-208 729.6 647 57.8
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 1.1e-207 727.2 650 58.6
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 2.4e-207 726.1 657 57.8
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 4.2e-207 725.3 654 58.3
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 9.3e-207 724.2 643 58.9
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 2.1e-206 723.0 458 76.4
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 4.6e-206 721.8 648 58.0
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 7.9e-206 721.1 658 57.1
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.3e-205 719.5 645 58.3
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 1.5e-204 716.8 644 57.3
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 7.3e-204 714.5 654 56.9
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 1.1e-202 710.7 656 56.1
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 3.1e-202 709.1 646 56.7
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 4.0e-202 708.8 650 56.5
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 5.3e-202 708.4 655 55.3
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 6.9e-202 708.0 653 56.2
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 2.6e-201 706.1 660 56.4
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 3.4e-201 705.7 653 56.4
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 3.4e-201 705.7 648 56.5
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 3.4e-201 705.7 653 56.5
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 1.2e-198 697.2 555 61.3
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 2.7e-198 696.0 658 56.1
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 1.8e-197 693.3 648 54.3
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 8.7e-197 691.0 519 65.9
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 2.8e-195 686.0 529 64.5
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.1e-194 684.1 658 54.7
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 1.1e-194 684.1 654 55.5
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 4.0e-194 682.2 655 55.4
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 5.3e-194 681.8 523 63.9
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 6.9e-194 681.4 523 63.9
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 1.2e-193 680.6 560 63.4
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 1.7e-192 676.8 626 55.4
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 2.2e-192 676.4 649 52.5
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 2.9e-192 676.0 649 54.5
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 7.1e-191 671.4 662 52.1
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 7.1e-191 671.4 652 54.4
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 1.6e-190 670.2 656 53.2
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 2.7e-190 669.5 669 53.7
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 7.9e-190 667.9 652 54.0
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 5.1e-189 665.2 409 78.5
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 5.1e-189 665.2 409 78.5
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 1.5e-188 663.7 652 53.8
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 2.5e-188 662.9 646 53.4
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 2.5e-188 662.9 463 68.0
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 2.5e-188 662.9 552 60.9
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 7.4e-188 661.4 651 52.4
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 4.1e-186 655.6 658 52.9
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 5.3e-186 655.2 655 53.4
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 1.2e-185 654.1 655 52.7
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 1.2e-185 654.1 660 52.3
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 1.5e-185 653.7 574 58.9
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 2.0e-185 653.3 656 52.6
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 4.5e-185 652.1 656 52.3
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 1.0e-184 651.0 636 54.9
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 1.3e-184 650.6 654 52.9
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 1.7e-184 650.2 659 52.4
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 4.2e-183 645.6 656 52.7
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 7.2e-183 644.8 635 52.4
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 6.1e-182 641.7 727 48.0
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.5e-177 627.1 535 60.0
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 3.4e-177 625.9 569 58.3
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 5.9e-177 625.2 599 54.1
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.9e-176 622.9 678 50.9
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.8e-173 613.6 529 59.7
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 5.1e-173 612.1 457 68.1
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 4.5e-169 599.0 548 54.6
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 1.1e-167 594.3 572 54.7
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 9.7e-164 581.3 571 52.9
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 1.1e-162 577.8 404 69.8
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 1.1e-159 567.8 404 68.3
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 4.4e-156 555.8 652 46.5
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 2.0e-153 547.0 418 63.4
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 3.5e-153 546.2 401 66.1
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.5e-151 540.8 625 46.6
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 4.0e-149 532.7 402 64.7
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 7.7e-145 518.5 486 55.1
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 4.7e-142 509.2 556 48.2
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 1.1e-138 498.0 340 69.7
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 3.1e-138 496.5 430 59.3
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.2e-137 494.6 480 54.4
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 1.9e-135 487.3 528 50.4
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 2.2e-131 473.8 487 51.5
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 1.4e-130 471.1 451 53.0
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 2.3e-128 463.8 349 68.5
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 3.3e-127 459.9 468 50.0
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 2.2e-123 447.2 532 44.9
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 3.7e-123 446.4 482 48.5
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 1.4e-122 444.5 475 49.1
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 5.1e-112 409.5 394 52.3
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 8.6e-112 408.7 264 73.5
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 1.1e-109 401.7 257 72.0
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 4.0e-101 373.2 531 41.6
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 6.4e-99 365.9 689 33.2
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 1.5e-92 344.7 320 52.8
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.7e-91 341.3 276 57.6
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.4e-90 337.4 402 45.0
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 3.4e-76 290.4 554 34.3
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.9e-71 274.6 218 58.3
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 1.8e-61 241.5 232 59.1
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 5.0e-59 233.4 159 65.4
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 8.2e-54 216.1 250 47.6
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 9.1e-53 212.6 252 48.4
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 1.4e-50 205.3 195 50.3
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 6.7e-48 196.4 129 69.8
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 6.7e-48 196.4 132 65.2
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 5.2e-40 170.2 124 67.7
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 6.7e-40 169.9 223 44.8
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 2.0e-39 168.3 153 60.1
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 7.5e-39 166.4 124 66.1
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 3.7e-38 164.1 153 58.2
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 1.4e-29 135.6 98 69.4
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 1.1e-21 109.4 145 47.6
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 4.9e-14 84.0 228 30.3
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 2.7e-12 78.2 113 40.7
Hund21883 Selenicereus undatus HOM05D005279 ORTHO05D037448 3.1e-08 64.7 70 48.6
Hund30008 Selenicereus undatus HOM05D005279 ORTHO05D037448 3.1e-08 64.7 70 48.6
QL01p050333 Quercus lobata HOM05D005279 ORTHO05D037448 7.5e-07 60.1 53 60.4


User provided reference genes

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