Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0129600 Rhododendron simsii HOM05D003440 ORTHO05D003953 2.7e-64 248.4 119 100.0
vmacro10410 Vaccinium macrocarpon HOM05D003440 ORTHO05D003953 1.1e-52 209.9 119 85.7
Dinv29111 Davidia involucrata HOM05D003440 ORTHO05D003953 3.8e-34 148.3 120 66.7
Hma1.2p1_0123F.1_g057890 Hydrangea macrophylla HOM05D003440 ORTHO05D003953 8.4e-34 147.1 115 65.2
Actinidia34765 Actinidia chinensis HOM05D003440 ORTHO05D003953 3.2e-33 145.2 120 70.0
CSS0029757 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 9.3e-33 143.7 119 66.4
Dinv06976 Davidia involucrata HOM05D003440 ORTHO05D003953 9.3e-33 143.7 124 63.7
Manes.09G184900 Manihot esculenta HOM05D003440 ORTHO05D003953 1.8e-31 139.4 117 59.8
Eucgr.H01385 Eucalyptus grandis HOM05D003440 ORTHO05D003953 5.1e-31 137.9 121 61.2
Duzib128G1849 Durio zibethinus HOM05D003440 ORTHO05D003953 1.9e-30 136.0 106 64.2
COL.COLO4_27388 Corchorus olitorius HOM05D003440 ORTHO05D003953 2.5e-30 135.6 114 63.2
CANSAT54G0566 Cannabis sativa HOM05D003440 ORTHO05D003953 3.3e-30 135.2 118 59.3
MD12G1259800 Malus domestica HOM05D003440 ORTHO05D003953 5.7e-30 134.4 113 57.5
Thecc.05G200800 Theobroma cacao HOM05D003440 ORTHO05D003953 7.4e-30 134.0 118 61.9
ClCG03G010850 Citrullus lanatus HOM05D003440 ORTHO05D003953 9.6e-30 133.7 120 57.5
QL01p048843 Quercus lobata HOM05D003440 ORTHO05D003953 1.3e-29 133.3 117 64.1
QL04p042289 Quercus lobata HOM05D003440 ORTHO05D003953 1.3e-29 133.3 117 63.2
CsaV3_1G044590 Cucumis sativus L. HOM05D003440 ORTHO05D003953 1.6e-29 132.9 120 57.5
Sabra19G0062600 Salix brachista HOM05D003440 ORTHO05D003953 2.1e-29 132.5 119 57.1
PGR031G2316 Punica granatum HOM05D003440 ORTHO05D003953 2.8e-29 132.1 117 62.4
Cc09_g03520 Coffea canephora HOM05D003440 ORTHO05D003953 4.8e-29 131.3 116 61.2
Lalb_Chr03g0038421 Lupinus albus HOM05D003440 ORTHO05D003953 1.1e-28 130.2 117 60.7
Manes.08G104200 Manihot esculenta HOM05D003440 ORTHO05D003953 1.1e-28 130.2 118 57.6
MD04G1244000 Malus domestica HOM05D003440 ORTHO05D003953 1.4e-28 129.8 113 57.5
Gorai.010G138900 Gossypium raimondii HOM05D003440 ORTHO05D003953 1.8e-28 129.4 107 63.6
Prupe.6G360500 Prunus persica HOM05D003440 ORTHO05D003953 2.4e-28 129.0 127 54.3
GSVIVG01019121001 Vitis vinifera HOM05D003440 ORTHO05D003953 2.4e-28 129.0 122 59.8
CsaV3_2G009650 Cucumis sativus L. HOM05D003440 ORTHO05D003953 3.1e-28 128.6 115 58.3
Gorai.013G179900 Gossypium raimondii HOM05D003440 ORTHO05D003953 3.1e-28 128.6 110 62.7
Phvul.008G054900 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 5.3e-28 127.9 116 59.5
DCAR_007995 Daucus carota HOM05D003440 ORTHO05D003953 6.9e-28 127.5 116 62.9
Gohir.D04G026200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 6.9e-28 127.5 120 60.8
ClCG11G010770 Citrullus lanatus HOM05D003440 ORTHO05D003953 9.0e-28 127.1 115 58.3
Sed0009834 Sechium edule HOM05D003440 ORTHO05D003953 9.0e-28 127.1 111 58.6
Sed0018617 Sechium edule HOM05D003440 ORTHO05D003953 9.0e-28 127.1 116 56.9
Glyma.09G251300 Glycine max HOM05D003440 ORTHO05D003953 1.2e-27 126.7 116 59.5
Glyma.18G241200 Glycine max HOM05D003440 ORTHO05D003953 1.2e-27 126.7 116 59.5
TWI75G0665 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 1.2e-27 126.7 119 56.3
FAN02G4240 Fragaria x ananassa HOM05D003440 ORTHO05D003953 1.5e-27 126.3 117 59.0
Gorai.012G028800 Gossypium raimondii HOM05D003440 ORTHO05D003953 1.5e-27 126.3 119 60.5
Gohir.D13G159200 Gossypium hirsutum HOM05D003440 ORTHO05D003953 2.0e-27 125.9 110 61.8
RcHm_v2.0_Chr3g0447971 Rosa chinensis HOM05D003440 ORTHO05D003953 2.0e-27 125.9 116 56.9
Haze_04543 Corylus avellana HOM05D003440 ORTHO05D003953 2.6e-27 125.6 117 64.1
TWI36G0275 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 2.6e-27 125.6 119 55.5
MELO3C008739.2 Cucumis melo HOM05D003440 ORTHO05D003953 3.4e-27 125.2 115 57.4
Gohir.A13G154500 Gossypium hirsutum HOM05D003440 ORTHO05D003953 3.4e-27 125.2 110 61.8
Nitab4.5_0012961g0010 Nicotiana tabacum HOM05D003440 ORTHO05D003953 4.5e-27 124.8 114 59.6
Gohir.A05G391000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 5.8e-27 124.4 119 59.7
Gohir.D13G092000 Gossypium hirsutum HOM05D003440 ORTHO05D003953 5.8e-27 124.4 107 61.7
Nitab4.5_0001653g0080 Nicotiana tabacum HOM05D003440 ORTHO05D003953 5.8e-27 124.4 112 58.0
Peaxi162Scf00253g00722 Petunia axillaris HOM05D003440 ORTHO05D003953 5.8e-27 124.4 106 58.5
Potri.019G053100 Populus trichocarpa HOM05D003440 ORTHO05D003953 5.8e-27 124.4 119 53.8
FvH4_6g00580 Fragaria vesca HOM05D003440 ORTHO05D003953 7.6e-27 124.0 117 56.4
Lalb_Chr19g0127521 Lupinus albus HOM05D003440 ORTHO05D003953 7.6e-27 124.0 118 60.2
AL2G20420 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 1.0e-26 123.6 106 59.4
AT1G65295 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 1.0e-26 123.6 83 65.1
Duzib106G1272 Durio zibethinus HOM05D003440 ORTHO05D003953 1.0e-26 123.6 110 59.1
Thhalv10019335m.g Eutrema salsugineum HOM05D003440 ORTHO05D003953 1.3e-26 123.2 110 59.1
Lj1g0010972 Lotus japonicus HOM05D003440 ORTHO05D003953 2.2e-26 122.5 114 58.8
Cpa.g.sc39.4 Carica papaya HOM05D003440 ORTHO05D003953 5.0e-26 121.3 115 56.5
arahy.Tifrunner.gnm1.ann1.7Z41ZG Arachis hypogaea HOM05D003440 ORTHO05D003953 8.4e-26 120.6 115 55.7
arahy.Tifrunner.gnm1.ann1.UVCE5Y Arachis hypogaea HOM05D003440 ORTHO05D003953 8.4e-26 120.6 115 55.7
CARHR056980 Cardamine hirsuta HOM05D003440 ORTHO05D003953 8.4e-26 120.6 83 65.1
Glyma.10G170700 Glycine max HOM05D003440 ORTHO05D003953 8.4e-26 120.6 114 60.5
MBI07_g09261_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 8.4e-26 120.6 107 61.7
Nn1g09786 Nelumbo nucifera HOM05D003440 ORTHO05D003953 8.4e-26 120.6 78 71.8
Carub.0002s1098 Capsella rubella HOM05D003440 ORTHO05D003953 1.1e-25 120.2 106 58.5
Ciclev10013140m.g Citrus clementina HOM05D003440 ORTHO05D003953 1.1e-25 120.2 121 53.7
Glyma.20G219200 Glycine max HOM05D003440 ORTHO05D003953 1.1e-25 120.2 67 82.1
CDE05G2380 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 1.4e-25 119.8 79 70.9
SalBow6G6125 Salvia bowleyana HOM05D003440 ORTHO05D003953 1.4e-25 119.8 113 61.1
THA.LOC104805696 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 1.4e-25 119.8 106 54.7
Psat3g103680 Pisum sativum HOM05D003440 ORTHO05D003953 1.9e-25 119.4 115 54.8
Solyc11g008910.2 Solanum lycopersicum HOM05D003440 ORTHO05D003953 1.9e-25 119.4 106 55.7
ATR0561G171 Amborella trichopoda HOM05D003440 ORTHO05D003953 2.5e-25 119.0 108 57.4
PGSC0003DMG400016235 Solanum tuberosum HOM05D003440 ORTHO05D003953 2.5e-25 119.0 106 55.7
BcaNung05535 Brassica carinata HOM05D003440 ORTHO05D003953 3.2e-25 118.6 106 57.5
A02p13170 Brassica napus HOM05D003440 ORTHO05D003953 4.2e-25 118.2 103 58.3
Phvul.007G118600 Phaseolus vulgaris HOM05D003440 ORTHO05D003953 4.2e-25 118.2 58 87.9
CiPaw.07G079500 Carya illinoinensis HOM05D003440 ORTHO05D003953 5.5e-25 117.9 115 60.0
Sopen11g004700 Solanum pennellii HOM05D003440 ORTHO05D003953 5.5e-25 117.9 108 55.6
THA.LOC104821944 Tarenaya hassleriana HOM05D003440 ORTHO05D003953 7.2e-25 117.5 110 55.5
CDE05G3613 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 9.3e-25 117.1 106 57.5
MBI11_g07420_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 1.6e-24 116.3 115 57.4
Sed0001280 Sechium edule HOM05D003440 ORTHO05D003953 1.6e-24 116.3 111 54.1
Lalb_Chr02g0149431 Lupinus albus HOM05D003440 ORTHO05D003953 3.5e-24 115.2 76 68.4
BraA07t30906Z Brassica rapa HOM05D003440 ORTHO05D003953 4.6e-24 114.8 111 57.7
Migut.F02138 Erythranthe guttata HOM05D003440 ORTHO05D003953 4.6e-24 114.8 118 56.8
BcaC03g14694 Brassica carinata HOM05D003440 ORTHO05D003953 6.1e-24 114.4 107 59.8
C02p21330 Brassica napus HOM05D003440 ORTHO05D003953 6.1e-24 114.4 107 59.8
BolC2t08270H Brassica oleracea HOM05D003440 ORTHO05D003953 6.1e-24 114.4 107 59.8
Lj1g0025945 Lotus japonicus HOM05D003440 ORTHO05D003953 6.1e-24 114.4 115 53.9
SalBow1G3495 Salvia bowleyana HOM05D003440 ORTHO05D003953 6.1e-24 114.4 112 56.2
TPR.G30343 Trifolium pratense HOM05D003440 ORTHO05D003953 6.1e-24 114.4 114 52.6
A07p32790 Brassica napus HOM05D003440 ORTHO05D003953 7.9e-24 114.0 102 55.9
C06p39000 Brassica napus HOM05D003440 ORTHO05D003953 7.9e-24 114.0 109 56.0
BolC6t38992H Brassica oleracea HOM05D003440 ORTHO05D003953 7.9e-24 114.0 109 56.0
BraA02t06373Z Brassica rapa HOM05D003440 ORTHO05D003953 7.9e-24 114.0 107 59.8
MELO3C010069.2 Cucumis melo HOM05D003440 ORTHO05D003953 7.9e-24 114.0 113 54.9
BcaB05g24106 Brassica carinata HOM05D003440 ORTHO05D003953 1.0e-23 113.6 107 58.9
TPR.G14664 Trifolium pratense HOM05D003440 ORTHO05D003953 1.0e-23 113.6 72 68.1
Oeu040492.1 Olea europaea HOM05D003440 ORTHO05D003953 1.3e-23 113.2 117 54.7
EL10Ac4g09977 Beta vulgaris HOM05D003440 ORTHO05D003953 1.8e-23 112.8 124 54.0
Migut.F01880 Erythranthe guttata HOM05D003440 ORTHO05D003953 1.8e-23 112.8 119 51.3
SEGI_04004 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 5.1e-23 111.3 58 82.8
Medtr7g079830 Medicago truncatula HOM05D003440 ORTHO05D003953 6.7e-23 110.9 113 52.2
FAN14G3476 Fragaria x ananassa HOM05D003440 ORTHO05D003953 2.5e-22 109.0 116 53.4
Os11g0463700 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 2.5e-22 109.0 76 60.5
FAN09G4309 Fragaria x ananassa HOM05D003440 ORTHO05D003953 5.7e-22 107.8 111 54.1
FAN05G5443 Fragaria x ananassa HOM05D003440 ORTHO05D003953 7.4e-22 107.5 110 57.3
Zm00001eb169930 Zea mays HOM05D003440 ORTHO05D003953 3.7e-21 105.1 56 73.2
HanXRQChr16g0512031 Helianthus annuus HOM05D003440 ORTHO05D003953 4.8e-21 104.8 126 50.0
Peaxi162Scf00344g01116 Petunia axillaris HOM05D003440 ORTHO05D003953 2.6e-19 99.0 43 90.7
HanXRQChr05g0150821 Helianthus annuus HOM05D003440 ORTHO05D003953 7.7e-19 97.4 54 74.1
Hund21895 Selenicereus undatus HOM05D003440 ORTHO05D003953 1.3e-18 96.7 125 50.4
AUR62000320 Chenopodium quinoa HOM05D003440 ORTHO05D003953 1.7e-18 96.3 125 48.0
AUR62006666 Chenopodium quinoa HOM05D003440 ORTHO05D003953 2.9e-18 95.5 113 51.3
SGA_v2.0_scaffold122G33174 Striga asiatica HOM05D003440 ORTHO05D003953 1.2e-16 90.1 120 44.2
Hund07337 Selenicereus undatus HOM05D003440 ORTHO05D003953 2.1e-16 89.4 119 48.7
HanXRQChr14g0434751 Helianthus annuus HOM05D003440 ORTHO05D003953 7.9e-16 87.4 86 54.7
Eucgr.K01315 Eucalyptus grandis HOM05D003440 ORTHO05D003953 1.8e-15 86.3 81 46.9
Os01g0917300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 1.5e-14 83.2 117 44.4
Gohir.A02G000800 Gossypium hirsutum HOM05D003440 ORTHO05D003953 9.7e-14 80.5 91 40.7
Gohir.D02G001100 Gossypium hirsutum HOM05D003440 ORTHO05D003953 9.7e-14 80.5 91 40.7
Gorai.005G001600 Gossypium raimondii HOM05D003440 ORTHO05D003953 9.7e-14 80.5 91 40.7
Atru.chr8.26 Acer truncatum HOM05D003440 ORTHO05D003953 1.7e-13 79.7 68 50.0
Thecc.04G064200 Theobroma cacao HOM05D003440 ORTHO05D003953 2.2e-13 79.3 119 39.5
Ciclev10013742m.g Citrus clementina HOM05D003440 ORTHO05D003953 4.8e-13 78.2 102 39.2
MBI15_g11745_MAGBIO Magnolia biondii HOM05D003440 ORTHO05D003953 6.3e-13 77.8 114 41.2
TAR633G0436 Trochodendron aralioides HOM05D003440 ORTHO05D003953 6.3e-13 77.8 110 37.3
Aqoxy2G00611 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 1.1e-12 77.0 72 48.6
arahy.Tifrunner.gnm1.ann1.FBZP9J Arachis hypogaea HOM05D003440 ORTHO05D003953 1.4e-12 76.6 116 37.9
Cfa016982 Carpinus fangiana HOM05D003440 ORTHO05D003953 1.4e-12 76.6 87 41.4
Potri.006G113700 Populus trichocarpa HOM05D003440 ORTHO05D003953 1.8e-12 76.3 55 54.5
GSVIVG01029833001 Vitis vinifera HOM05D003440 ORTHO05D003953 1.8e-12 76.3 90 42.2
Nn5g26738 Nelumbo nucifera HOM05D003440 ORTHO05D003953 2.4e-12 75.9 64 50.0
Pp3c6_18540 Physcomitrium patens HOM05D003440 ORTHO05D003953 3.1e-12 75.5 95 37.9
Prupe.6G300400 Prunus persica HOM05D003440 ORTHO05D003953 4.1e-12 75.1 91 39.6
Sabra06G0088600 Salix brachista HOM05D003440 ORTHO05D003953 4.1e-12 75.1 52 55.8
QL07p030748 Quercus lobata HOM05D003440 ORTHO05D003953 6.9e-12 74.3 113 38.9
CSS0039616 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 9.1e-12 73.9 80 40.0
Pp3c5_6640 Physcomitrium patens HOM05D003440 ORTHO05D003953 9.1e-12 73.9 80 40.0
Potri.016G143400 Populus trichocarpa HOM05D003440 ORTHO05D003953 1.2e-11 73.6 116 42.2
Prupe.1G131400 Prunus persica HOM05D003440 ORTHO05D003953 1.2e-11 73.6 40 80.0
CSS0018403 Camellia sinensis var. sinensis HOM05D003440 ORTHO05D003953 1.5e-11 73.2 77 42.9
QL07p030389 Quercus lobata HOM05D003440 ORTHO05D003953 1.5e-11 73.2 113 38.1
Cpa.g.sc0.29 Carica papaya HOM05D003440 ORTHO05D003953 2.0e-11 72.8 51 54.9
Lsat_1_v5_gn_5_153521 Lactuca sativa HOM05D003440 ORTHO05D003953 2.0e-11 72.8 60 50.0
TWI74G0415 Tripterygium wilfordii HOM05D003440 ORTHO05D003953 3.4e-11 72.0 74 41.9
QL07p030310 Quercus lobata HOM05D003440 ORTHO05D003953 4.5e-11 71.6 59 50.8
QL07p030704 Quercus lobata HOM05D003440 ORTHO05D003953 4.5e-11 71.6 59 50.8
Dinv16919 Davidia involucrata HOM05D003440 ORTHO05D003953 5.9e-11 71.2 113 36.3
HanXRQChr01g0000641 Helianthus annuus HOM05D003440 ORTHO05D003953 5.9e-11 71.2 119 38.7
SEGI_09135 Sequoiadendron giganteum HOM05D003440 ORTHO05D003953 7.7e-11 70.9 63 46.0
HanXRQChr11g0329301 Helianthus annuus HOM05D003440 ORTHO05D003953 1.0e-10 70.5 64 50.0
HanXRQChr11g0329311 Helianthus annuus HOM05D003440 ORTHO05D003953 1.0e-10 70.5 64 50.0
PGR004G0491 Punica granatum HOM05D003440 ORTHO05D003953 1.0e-10 70.5 121 40.5
MD04G1180500 Malus domestica HOM05D003440 ORTHO05D003953 1.3e-10 70.1 115 34.8
ATR1127G118 Amborella trichopoda HOM05D003440 ORTHO05D003953 2.2e-10 69.3 56 46.4
FAN02G2454 Fragaria x ananassa HOM05D003440 ORTHO05D003953 2.2e-10 69.3 112 39.3
ATR1127G125 Amborella trichopoda HOM05D003440 ORTHO05D003953 2.9e-10 68.9 61 45.9
COL.COLO4_20128 Corchorus olitorius HOM05D003440 ORTHO05D003953 2.9e-10 68.9 90 40.0
PSO384G1065 Papaver somniferum HOM05D003440 ORTHO05D003953 2.9e-10 68.9 55 50.9
AT5G01015 Arabidopsis thaliana HOM05D003440 ORTHO05D003953 3.8e-10 68.6 58 48.3
Carub.0024s0002 Capsella rubella HOM05D003440 ORTHO05D003953 3.8e-10 68.6 58 48.3
Aqoxy7G03194 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 8.5e-10 67.4 54 51.9
CDE04G0952 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 8.5e-10 67.4 111 37.8
Sp6g41240 Schrenkiella parvula HOM05D003440 ORTHO05D003953 8.5e-10 67.4 58 46.6
AL6G10020 Arabidopsis lyrata HOM05D003440 ORTHO05D003953 1.1e-09 67.0 57 47.4
Lsat_1_v5_gn_8_108200 Lactuca sativa HOM05D003440 ORTHO05D003953 1.9e-09 66.2 55 45.5
Aa31LG5G11290 Aethionema arabicum HOM05D000046 ORTHO05D000457 2.5e-09 65.9 79 39.2
Mapoly0005s0064 Marchantia polymorpha HOM05D003440 ORTHO05D003953 2.5e-09 65.9 60 53.3
Os11g0121300 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 4.2e-09 65.1 53 50.9
Os12g0121000 Oryza sativa ssp. japonica HOM05D003440 ORTHO05D003953 4.2e-09 65.1 53 50.9
Aqoxy7G03195 Aquilegia oxysepala HOM05D003440 ORTHO05D003953 7.2e-09 64.3 101 34.7
Haze_21225 Corylus avellana HOM05D003440 ORTHO05D003953 7.2e-09 64.3 113 35.4
CANSAT25G3389 Cannabis sativa HOM05D003440 ORTHO05D003953 1.6e-08 63.2 113 35.4
CDE12G0097 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 3.6e-08 62.0 120 34.2
Solyc09g005200.3 Solanum lycopersicum HOM05D003440 ORTHO05D003953 1.8e-07 59.7 35 57.1
Sopen09g001180 Solanum pennellii HOM05D003440 ORTHO05D003953 1.8e-07 59.7 35 57.1
PGSC0003DMG400011798 Solanum tuberosum HOM05D003440 ORTHO05D003953 1.8e-07 59.7 35 57.1
Zm00001eb093770 Zea mays HOM05D003440 ORTHO05D003953 2.3e-07 59.3 58 43.1
CDE04G0842 Ceratophyllum demersum HOM05D003440 ORTHO05D003953 3.9e-07 58.5 58 43.1
MD12G1195900 Malus domestica HOM05D003440 ORTHO05D003953 6.7e-07 57.8 85 34.1
FAN14G4320 Fragaria x ananassa HOM05D003440 ORTHO05D003953 8.8e-07 57.4 89 36.0
FAN05G4201 Fragaria x ananassa HOM05D003440 ORTHO05D003953 1.5e-06 56.6 76 40.8
FvH4_6g09130 Fragaria vesca HOM05D003440 ORTHO05D003953 5.7e-06 54.7 111 33.3


User provided reference genes

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