Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0125700 Rhododendron simsii HOM05D004942 ORTHO05D005687 0.0e+00 2716.0 1345 100.0
vmacro10440 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 2.3e-284 983.0 677 74.4
Haze_11879 Corylus avellana HOM05D004942 ORTHO05D005687 9.5e-275 951.0 1397 42.8
Cfa008858 Carpinus fangiana HOM05D004942 ORTHO05D005687 1.9e-270 936.8 1387 41.7
CSS0007829 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 2.7e-269 932.9 974 55.9
CSS0011617 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 4.6e-269 932.2 974 55.9
QL03p073561 Quercus lobata HOM05D004942 ORTHO05D005687 1.2e-258 897.5 1389 41.6
Hma1.2p1_2519F.1_g323790 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 1.4e-257 894.0 1324 43.1
vmacro10441 Vaccinium macrocarpon HOM05D004942 ORTHO05D005687 5.4e-254 882.1 695 69.9
GSVIVG01012245001 Vitis vinifera HOM05D004942 ORTHO05D005687 4.6e-253 879.0 1364 41.9
Potri.008G097700 Populus trichocarpa HOM05D004942 ORTHO05D005687 3.2e-246 856.3 1406 39.7
Prupe.1G290000 Prunus persica HOM05D004942 ORTHO05D005687 2.3e-244 850.1 1383 41.4
Manes.01G026200 Manihot esculenta HOM05D004942 ORTHO05D005687 2.1e-242 843.6 1360 40.1
CiPaw.06G093500 Carya illinoinensis HOM05D004942 ORTHO05D005687 1.9e-238 830.5 1368 39.9
Thecc.02G326800 Theobroma cacao HOM05D004942 ORTHO05D005687 9.3e-230 801.6 1394 38.5
MD16G1059100 Malus domestica HOM05D004942 ORTHO05D005687 1.6e-229 800.8 1492 36.9
Hma1.2p1_0566F.1_g179990 Hydrangea macrophylla HOM05D004942 ORTHO05D005687 6.0e-229 798.9 1280 41.2
Duzib251G0048 Durio zibethinus HOM05D004942 ORTHO05D005687 4.8e-226 789.3 1386 37.6
RcHm_v2.0_Chr4g0437911 Rosa chinensis HOM05D004942 ORTHO05D005687 6.9e-217 758.8 1434 37.7
CANSAT64G2200 Cannabis sativa HOM05D004942 ORTHO05D005687 2.6e-208 730.3 1375 36.5
FAN07G2875 Fragaria x ananassa HOM05D004942 ORTHO05D005687 1.1e-206 724.9 1425 35.6
FAN22G2425 Fragaria x ananassa HOM05D004942 ORTHO05D005687 1.6e-205 721.1 1401 36.5
Gorai.008G175800 Gossypium raimondii HOM05D004942 ORTHO05D005687 7.9e-205 718.8 1403 36.1
Nn3g17507 Nelumbo nucifera HOM05D004942 ORTHO05D005687 1.1e-203 714.9 1534 35.3
FvH4_4g29660 Fragaria vesca HOM05D004942 ORTHO05D005687 1.8e-201 707.6 1395 36.3
Sabra08G0073900 Salix brachista HOM05D004942 ORTHO05D005687 1.2e-200 704.9 1444 36.5
FAN12G1725 Fragaria x ananassa HOM05D004942 ORTHO05D005687 1.0e-199 701.8 1421 35.4
Oeu020362.1 Olea europaea HOM05D004942 ORTHO05D005687 1.9e-198 697.6 1355 37.4
Ciclev10033741m.g Citrus clementina HOM05D004942 ORTHO05D005687 2.5e-198 697.2 1323 37.2
Lj3A1029T37 Lonicera japonica HOM05D004942 ORTHO05D005687 1.5e-195 688.0 1427 36.5
Dinv34045 Davidia involucrata HOM05D004942 ORTHO05D005687 2.6e-195 687.2 854 48.6
TWI79G0892 Tripterygium wilfordii HOM05D004942 ORTHO05D005687 5.9e-192 676.0 1390 35.2
Cc11_g11760 Coffea canephora HOM05D004942 ORTHO05D005687 4.0e-188 663.3 1370 35.3
Sc04g0007460 Simmondsia chinensis HOM05D004942 ORTHO05D005687 5.9e-184 649.4 1426 34.8
Aqoxy3G00534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 6.5e-183 646.0 1389 35.2
Peaxi162Scf00175g00531 Petunia axillaris HOM05D004942 ORTHO05D005687 5.2e-180 636.3 1358 34.9
Lalb_Chr09g0334721 Lupinus albus HOM05D004942 ORTHO05D005687 6.8e-180 636.0 1441 33.0
Cpa.g.sc1669.1 Carica papaya HOM05D004942 ORTHO05D005687 9.8e-179 632.1 1339 35.1
Aqoxy4G01534 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 1.6e-176 624.8 1397 34.1
MBI16_g37883_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 1.2e-173 615.1 1689 31.3
Nitab4.5_0000027g0020 Nicotiana tabacum HOM05D004942 ORTHO05D005687 1.6e-173 614.8 1347 33.4
ECA234G0983 Erigeron canadensis HOM05D004942 ORTHO05D005687 3.6e-173 613.6 1378 33.3
Glyma.16G091700 Glycine max HOM05D004942 ORTHO05D005687 4.4e-171 606.7 1349 34.2
THA.LOC104822000 Tarenaya hassleriana HOM05D004942 ORTHO05D005687 1.4e-169 601.7 1374 32.8
PGR031G3471 Punica granatum HOM05D004942 ORTHO05D005687 1.2e-168 598.6 1366 34.6
VMungo0251G2230 Vigna mungo HOM05D004942 ORTHO05D005687 1.2e-168 598.6 1351 33.2
PSO478G0521 Papaver somniferum HOM05D004942 ORTHO05D005687 1.3e-167 595.1 1483 32.1
PSO017G2640 Papaver somniferum HOM05D004942 ORTHO05D005687 2.3e-167 594.3 1429 33.2
Migut.L01173 Erythranthe guttata HOM05D004942 ORTHO05D005687 2.9e-167 594.0 1359 34.0
Phvul.003G282800 Phaseolus vulgaris HOM05D004942 ORTHO05D005687 2.9e-167 594.0 1400 32.5
Hund25161 Selenicereus undatus HOM05D004942 ORTHO05D005687 4.7e-165 586.6 1359 32.1
Nitab4.5_0003545g0010 Nicotiana tabacum HOM05D004942 ORTHO05D005687 7.5e-163 579.3 1359 32.3
Actinidia28654 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.4e-161 575.1 970 40.3
AL1G39420 Arabidopsis lyrata HOM05D004942 ORTHO05D005687 2.0e-160 571.2 1385 32.6
HanXRQChr17g0568411 Helianthus annuus HOM05D004942 ORTHO05D005687 3.5e-160 570.5 1350 32.3
AUR62007894 Chenopodium quinoa HOM05D004942 ORTHO05D005687 2.3e-159 567.8 1513 31.9
COL.COLO4_27850 Corchorus olitorius HOM05D004942 ORTHO05D005687 1.1e-158 565.5 1329 33.3
Sopen05g006850 Solanum pennellii HOM05D004942 ORTHO05D005687 9.5e-158 562.4 1673 29.5
AT1G26330 Arabidopsis thaliana HOM05D004942 ORTHO05D005687 8.0e-157 559.3 1371 32.7
EL10Ac6g15023 Beta vulgaris HOM05D004942 ORTHO05D005687 8.0e-157 559.3 1384 32.8
Solyc05g012060.4 Solanum lycopersicum HOM05D004942 ORTHO05D005687 1.2e-155 555.4 1674 29.2
Thhalv10006590m.g Eutrema salsugineum HOM05D004942 ORTHO05D005687 2.0e-155 554.7 1361 31.9
AUR62003077 Chenopodium quinoa HOM05D004942 ORTHO05D005687 2.6e-155 554.3 1574 30.7
CARHR025590 Cardamine hirsuta HOM05D004942 ORTHO05D005687 4.4e-155 553.5 1362 31.6
Sed0022979 Sechium edule HOM05D004942 ORTHO05D005687 4.6e-152 543.5 1416 31.0
Lj4g0014066 Lotus japonicus HOM05D004942 ORTHO05D005687 1.7e-151 541.6 1359 32.7
Ah.03g138750 Amaranthus hybridus HOM05D004942 ORTHO05D005687 2.3e-151 541.2 1363 32.5
MELO3C012244.2 Cucumis melo HOM05D004942 ORTHO05D005687 4.7e-149 533.5 1426 31.2
BcaC05g26421 Brassica carinata HOM05D004942 ORTHO05D005687 1.2e-147 528.9 1447 31.5
Sp1g22360 Schrenkiella parvula HOM05D004942 ORTHO05D005687 3.4e-147 527.3 1392 30.6
C05p24600 Brassica napus HOM05D004942 ORTHO05D005687 4.4e-147 526.9 1441 31.4
BolC5t31196H Brassica oleracea HOM05D004942 ORTHO05D005687 4.4e-147 526.9 1441 31.4
A09p39800 Brassica napus HOM05D004942 ORTHO05D005687 5.8e-147 526.6 1419 30.7
Medtr8g066290 Medicago truncatula HOM05D004942 ORTHO05D005687 4.9e-146 523.5 1387 31.3
SGA_v2.0_scaffold16G07813 Striga asiatica HOM05D004942 ORTHO05D005687 6.4e-146 523.1 1356 31.9
Carub.0001s2467 Capsella rubella HOM05D004942 ORTHO05D005687 1.1e-145 522.3 1362 31.4
SalBow2G1731 Salvia bowleyana HOM05D004942 ORTHO05D005687 6.6e-143 513.1 1409 31.9
BraA09t39480Z Brassica rapa HOM05D004942 ORTHO05D005687 8.6e-143 512.7 1431 30.3
ClCG05G022730 Citrullus lanatus HOM05D004942 ORTHO05D005687 4.3e-142 510.4 1435 31.1
BcaC05g26635 Brassica carinata HOM05D004942 ORTHO05D005687 1.1e-140 505.8 1429 31.1
Psat4g122040 Pisum sativum HOM05D004942 ORTHO05D005687 3.4e-139 500.7 1344 30.7
CAN.G707.24 Capsicum annuum HOM05D004942 ORTHO05D005687 7.6e-139 499.6 1577 28.8
Ca_22664_v3 Cicer arietinum L. HOM05D004942 ORTHO05D005687 2.5e-126 458.0 1141 32.2
DCAR_023750 Daucus carota HOM05D004942 ORTHO05D005687 9.6e-126 456.1 1369 29.9
TPR.G3371 Trifolium pratense HOM05D004942 ORTHO05D005687 2.8e-125 454.5 1314 30.7
HPP92_000888 Vanilla planifolia HOM05D004942 ORTHO05D005687 1.8e-124 451.8 1458 28.7
ATR0827G101 Amborella trichopoda HOM05D004942 ORTHO05D005687 4.0e-124 450.7 1616 28.8
Gohir.A12G159900 Gossypium hirsutum HOM05D004942 ORTHO05D005687 3.4e-123 447.6 980 33.8
Migut.A01205 Erythranthe guttata HOM05D004942 ORTHO05D005687 4.5e-123 447.2 1342 29.7
Gohir.D12G163200 Gossypium hirsutum HOM05D004942 ORTHO05D005687 9.0e-116 422.9 1017 33.1
Aa31LG7G8720 Aethionema arabicum HOM05D004942 ORTHO05D005687 4.5e-115 420.6 1333 29.4
Lsat_1_v5_gn_4_11720 Lactuca sativa HOM05D004942 ORTHO05D005687 8.4e-114 416.4 1369 27.8
MBI16_g47660_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 3.2e-113 414.5 1482 28.7
Migut.A01186 Erythranthe guttata HOM05D004942 ORTHO05D005687 1.8e-111 408.7 1343 28.7
Psat1g014920 Pisum sativum HOM05D004942 ORTHO05D005687 2.7e-104 384.8 1364 27.3
CsaV3_5G034290 Cucumis sativus L. HOM05D004942 ORTHO05D005687 2.9e-98 364.8 1131 30.3
Os09g0101800 Oryza sativa ssp. japonica HOM05D004942 ORTHO05D005687 3.9e-95 354.4 1382 26.1
Atru.chr11.1595 Acer truncatum HOM05D004942 ORTHO05D005687 4.8e-93 347.4 651 37.2
Zm00001eb095700 Zea mays HOM05D004942 ORTHO05D005687 4.7e-88 330.9 1425 25.7
TAR629G1720 Trochodendron aralioides HOM05D004942 ORTHO05D005687 3.0e-87 328.2 384 48.2
Actinidia27212 Actinidia chinensis HOM05D004942 ORTHO05D005687 2.0e-86 325.5 227 70.9
TAR629G1003 Trochodendron aralioides HOM05D004942 ORTHO05D005687 2.2e-85 322.0 329 50.5
Actinidia28653 Actinidia chinensis HOM05D004942 ORTHO05D005687 1.1e-84 319.7 221 71.5
unitig_26.g10284 Utricularia gibba HOM05D004942 ORTHO05D005687 6.7e-79 300.4 1357 25.9
Atru.chr11.1596 Acer truncatum HOM05D004942 ORTHO05D005687 4.1e-76 291.2 307 49.8
TPR.G31932 Trifolium pratense HOM05D004942 ORTHO05D005687 3.8e-74 284.6 502 35.7
TPR.G31934 Trifolium pratense HOM05D004942 ORTHO05D005687 6.7e-71 273.9 471 39.3
Actinidia27213 Actinidia chinensis HOM05D004942 ORTHO05D005687 7.0e-68 263.8 305 51.8
Gohir.A12G159850 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.6e-64 252.7 331 46.5
CDE11G1026 Ceratophyllum demersum HOM05D004942 ORTHO05D005687 3.8e-50 204.9 450 32.0
CSS0004641 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 3.3e-49 201.8 156 64.7
SHI10798 Sapria himalayana HOM05D004942 ORTHO05D005687 2.1e-48 199.1 214 46.7
Gorai.012G127400 Gossypium raimondii HOM05D004942 ORTHO05D005687 1.4e-44 186.4 120 71.7
MSTRG.7735 Avicennia marina HOM05D004942 ORTHO05D005687 7.0e-44 184.1 121 70.2
Gohir.D12G163150 Gossypium hirsutum HOM05D004942 ORTHO05D005687 1.6e-43 183.0 130 65.4
GSVIVG01026037001 Vitis vinifera HOM05D004942 ORTHO05D005687 2.1e-40 172.6 150 58.0
SEGI_21482 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 4.4e-38 164.9 147 53.1
CSS0006420 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 1.9e-33 149.4 101 68.3
Mapoly0001s0391 Marchantia polymorpha HOM05D004942 ORTHO05D005687 1.4e-31 143.3 148 51.4
CSS0033973 Camellia sinensis var. sinensis HOM05D004942 ORTHO05D005687 5.4e-28 131.3 87 67.8
MBI16_g47661_MAGBIO Magnolia biondii HOM05D004942 ORTHO05D005687 5.6e-25 121.3 93 57.0
Actinidia16149 Actinidia chinensis HOM05D057958 ORTHO05D005687 9.5e-25 120.6 140 54.3
Actinidia26534 Actinidia chinensis HOM05D057958 ORTHO05D005687 9.5e-25 120.6 140 54.3
GSVIVG01015130001 Vitis vinifera HOM05D004942 ORTHO05D005687 2.8e-24 119.0 69 84.1
TAR629G0168 Trochodendron aralioides HOM05D004942 ORTHO05D005687 1.2e-22 113.6 254 34.6
GSVIVG01037061001 Vitis vinifera HOM05D004942 ORTHO05D005687 5.8e-22 111.3 67 82.1
GSVIVG01026043001 Vitis vinifera HOM05D004942 ORTHO05D005687 1.3e-21 110.2 69 78.3
SMO269G0037 Selaginella moellendorffii HOM05D004942 ORTHO05D005687 2.3e-18 99.4 397 27.2
Aqoxy4G01498 Aquilegia oxysepala HOM05D004942 ORTHO05D005687 1.5e-17 96.7 81 66.7
SHI10799 Sapria himalayana HOM05D004942 ORTHO05D005687 9.6e-17 94.0 95 49.5
SHI10796 Sapria himalayana HOM05D004942 ORTHO05D005687 2.8e-16 92.4 130 39.2
SEGI_38362 Sequoiadendron giganteum HOM05D004942 ORTHO05D005687 8.4e-13 80.9 124 37.1
Oeu028721.1 Olea europaea HOM05D004942 ORTHO05D005687 5.4e-12 78.2 118 46.6
MCO07G070 Micromonas commoda HOM05D004942 ORTHO05D005687 6.0e-11 74.7 134 32.1
Eucgr.G02429 Eucalyptus grandis HOM05D004942 ORTHO05D005687 2.8e-08 65.9 68 51.5


User provided reference genes

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