Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 0.0e+00 1454.9 749 100.0
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.7e-265 919.5 764 68.8
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 1.5e-181 640.6 762 53.7
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 3.4e-173 612.8 820 49.6
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 4.6e-146 522.7 814 45.6
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.2e-125 454.9 768 43.4
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 4.1e-118 429.9 760 43.3
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 8.6e-108 395.6 804 39.7
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 2.9e-100 370.5 600 43.7
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 3.9e-92 343.6 776 38.7
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 4.7e-90 336.7 839 35.8
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 3.1e-89 334.0 766 37.9
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 3.4e-88 330.5 825 34.3
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 8.6e-84 315.8 798 36.2
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 8.6e-84 315.8 798 36.2
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 6.2e-82 309.7 838 35.4
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 9.9e-80 302.4 786 36.1
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 2.9e-79 300.8 776 35.3
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 4.9e-79 300.1 791 35.4
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.9e-78 298.1 833 35.1
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 2.6e-72 277.7 761 33.8
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 2.6e-72 277.7 766 33.3
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.2e-71 274.6 781 33.8
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 7.8e-69 266.2 768 33.6
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 6.2e-66 256.5 683 34.8
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 3.1e-65 254.2 810 32.2
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 1.5e-64 251.9 764 33.0
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 4.4e-64 250.4 788 32.9
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 1.3e-63 248.8 801 32.7
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 1.1e-62 245.7 766 32.5
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 3.2e-62 244.2 769 33.7
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 4.2e-62 243.8 778 33.0
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 2.1e-61 241.5 754 32.1
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 3.5e-61 240.7 777 32.4
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 5.1e-60 236.9 749 31.4
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 6.6e-60 236.5 791 32.4
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 7.4e-59 233.0 767 32.3
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 3.1e-57 227.6 767 30.9
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 9.0e-57 226.1 775 32.6
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 2.0e-56 224.9 766 30.5
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 2.6e-56 224.6 818 30.9
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 4.5e-56 223.8 760 31.4
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 5.8e-56 223.4 763 31.3
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.7e-55 221.9 764 31.3
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 1.4e-54 218.8 739 31.5
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 7.1e-54 216.5 794 30.6
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 1.6e-53 215.3 732 30.7
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 4.6e-53 213.8 792 30.3
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.0e-52 212.6 736 31.8
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 3.0e-52 211.1 775 31.9
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 6.7e-52 209.9 781 31.4
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 1.5e-51 208.8 778 30.1
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 2.5e-51 208.0 866 28.9
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 1.6e-50 205.3 812 28.8
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 3.4e-48 197.6 736 30.3
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 5.8e-48 196.8 354 41.5
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 1.7e-47 195.3 775 31.0
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 3.8e-47 194.1 730 30.5
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 1.1e-46 192.6 755 31.1
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.5e-46 191.4 773 31.3
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 2.5e-46 191.4 773 29.9
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 4.2e-46 190.7 736 30.2
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 5.5e-46 190.3 251 50.6
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 4.6e-45 187.2 800 30.6
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.8e-44 185.3 773 30.8
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 2.3e-44 184.9 734 29.6
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 6.7e-44 183.3 741 29.0
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.1e-43 182.6 682 29.2
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 3.3e-43 181.0 772 30.4
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 7.4e-43 179.9 249 49.4
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 4.8e-42 177.2 277 46.2
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 1.4e-41 175.6 744 30.0
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.8e-41 175.3 373 36.7
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 7.6e-40 169.9 759 28.9
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 1.3e-39 169.1 740 28.2
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.2e-39 168.3 777 30.2
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 1.4e-38 165.6 263 44.5
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 1.2e-37 162.5 754 30.1
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 2.1e-37 161.8 763 28.7
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 1.3e-36 159.1 755 27.3
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 2.3e-36 158.3 755 27.9
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 3.0e-36 157.9 745 29.0
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.1e-35 156.0 252 45.6
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 3.3e-35 154.5 765 28.0
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 5.7e-35 153.7 665 28.0
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 9.7e-35 152.9 642 29.6
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 1.6e-34 152.1 245 42.9
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 2.2e-34 151.8 249 43.4
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 1.9e-30 138.7 463 31.3
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 4.2e-30 137.5 762 27.0
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 7.2e-30 136.7 749 27.4
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 9.4e-30 136.3 738 27.2
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 1.6e-29 135.6 785 26.2
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 3.6e-29 134.4 741 26.3
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 2.3e-28 131.7 759 27.3
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 2.3e-28 131.7 217 44.2
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 3.0e-28 131.3 735 26.7
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 5.1e-28 130.6 354 34.2
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 4.3e-27 127.5 786 26.0
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 5.7e-27 127.1 766 25.7
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 9.7e-27 126.3 781 26.1
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 6.3e-26 123.6 234 39.3
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 6.3e-26 123.6 251 38.2
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 1.4e-25 122.5 745 26.4
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 1.8e-25 122.1 752 26.9
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 3.1e-25 121.3 245 38.8
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 5.3e-25 120.6 225 40.9
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 1.5e-24 119.0 762 25.6
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 5.9e-24 117.1 194 41.8
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 5.9e-24 117.1 274 35.4
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 1.0e-23 116.3 253 35.2
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 6.5e-23 113.6 291 34.4
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 3.2e-22 111.3 762 25.3
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 3.2e-22 111.3 242 37.6
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 4.2e-22 110.9 250 36.8
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 1.2e-21 109.4 323 31.3
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 2.1e-21 108.6 763 26.1
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 1.8e-20 105.5 755 25.3
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 6.7e-20 103.6 752 25.0
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 6.7e-20 103.6 759 24.8
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 8.8e-20 103.2 254 34.6
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 1.5e-19 102.4 743 25.6
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 1.5e-19 102.4 241 36.9
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 8.2e-18 96.7 767 24.1
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 5.3e-17 94.0 937 23.4
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 2.6e-16 91.7 223 34.1
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 3.5e-16 91.3 225 36.4
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 3.5e-16 91.3 275 34.9
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 8.5e-15 86.7 649 25.6
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 1.1e-14 86.3 250 32.8
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 2.5e-14 85.1 182 35.7
arahy.Tifrunner.gnm1.ann1.6TZ00L Arachis hypogaea HOM05D005042 ORTHO05D006080 3.2e-14 84.7 558 26.0
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 3.2e-14 84.7 214 35.0
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 3.2e-14 84.7 651 24.7
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 4.2e-14 84.3 302 31.5
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 4.2e-14 84.3 168 35.1
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 7.2e-14 83.6 757 24.2
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 1.2e-13 82.8 46 89.1
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.2e-13 82.8 170 35.3
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 2.1e-13 82.0 124 43.5
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 2.1e-13 82.0 166 34.3
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 2.3e-12 78.6 95 57.9
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 5.0e-07 60.8 643 23.5
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 1.1e-06 59.7 187 27.8


User provided reference genes

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