Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 1.8e-212 742.3 360 100.0
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 1.0e-175 620.2 317 92.7
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 2.4e-164 582.4 322 86.6
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 1.9e-161 572.8 315 85.1
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.1e-156 557.0 316 82.3
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 6.3e-149 531.2 325 75.1
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 1.8e-148 529.6 315 77.5
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 3.1e-148 528.9 316 78.2
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 2.0e-147 526.2 315 77.8
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 3.4e-147 525.4 316 77.8
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 2.2e-146 522.7 316 77.2
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 3.8e-146 521.9 315 77.1
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 5.0e-146 521.5 315 74.9
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 1.4e-145 520.0 315 75.9
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 1.4e-145 520.0 315 75.2
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 4.2e-145 518.5 316 75.9
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 4.2e-145 518.5 315 75.6
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 7.2e-145 517.7 317 76.0
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 7.2e-145 517.7 323 75.9
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 1.2e-144 516.9 315 76.2
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 1.6e-144 516.5 367 68.4
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 2.1e-144 516.2 316 76.6
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 3.6e-144 515.4 319 77.4
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 6.1e-144 514.6 317 78.2
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 6.1e-144 514.6 319 74.3
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.8e-143 513.1 317 75.7
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 2.3e-143 512.7 315 74.9
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 2.3e-143 512.7 319 74.6
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 2.3e-143 512.7 352 70.2
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 3.0e-143 512.3 317 74.4
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 5.1e-143 511.5 319 74.6
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 6.7e-143 511.1 317 76.0
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 2.0e-142 509.6 369 67.5
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 2.6e-142 509.2 361 68.1
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 3.3e-142 508.8 316 74.1
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.4e-142 508.4 320 73.8
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 9.7e-142 507.3 316 73.7
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 1.3e-141 506.9 303 78.2
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 2.8e-141 505.8 318 74.2
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 8.2e-141 504.2 316 74.4
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 1.1e-140 503.8 319 75.2
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 1.4e-140 503.4 316 73.7
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 2.4e-140 502.7 321 73.8
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 2.4e-140 502.7 330 70.6
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 3.1e-140 502.3 317 72.9
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 5.3e-140 501.5 316 74.1
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 7.0e-140 501.1 319 73.4
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 1.2e-139 500.4 316 73.1
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 1.5e-139 500.0 315 74.0
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.5e-139 500.0 317 72.9
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 2.6e-139 499.2 316 72.5
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 2.6e-139 499.2 315 74.3
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 2.6e-139 499.2 317 72.2
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.6e-139 499.2 316 74.1
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 3.5e-139 498.8 315 74.3
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 3.5e-139 498.8 316 74.1
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.5e-139 498.4 317 71.9
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 7.7e-139 497.7 316 74.1
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 1.0e-138 497.3 316 74.4
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 1.7e-138 496.5 323 70.9
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 1.7e-138 496.5 317 74.1
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 1.7e-138 496.5 338 69.8
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.2e-138 496.1 317 76.3
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 2.9e-138 495.7 321 73.5
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.1e-137 493.8 313 73.5
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 1.1e-137 493.8 322 71.4
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 1.9e-137 493.0 316 73.7
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 2.5e-137 492.7 317 71.9
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 1.2e-136 490.3 316 72.8
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 2.1e-136 489.6 335 68.4
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 3.6e-136 488.8 316 71.8
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 3.6e-136 488.8 323 71.8
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 6.1e-136 488.0 337 68.5
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 6.1e-136 488.0 318 71.7
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 8.0e-136 487.6 316 71.2
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 1.4e-135 486.9 315 73.3
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.8e-135 486.5 316 70.9
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.8e-135 486.5 316 70.9
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 2.3e-135 486.1 342 68.4
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 3.9e-135 485.3 338 68.6
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 5.2e-135 485.0 314 71.7
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 6.7e-135 484.6 324 70.7
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 8.8e-135 484.2 320 70.9
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 1.5e-134 483.4 317 72.9
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 1.5e-134 483.4 355 65.9
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 4.4e-134 481.9 318 72.3
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 5.7e-134 481.5 329 69.6
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 7.4e-134 481.1 317 71.3
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 9.7e-134 480.7 315 70.8
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.3e-133 480.3 311 72.7
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 2.8e-133 479.2 315 74.3
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 3.7e-133 478.8 331 67.7
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 6.3e-133 478.0 315 69.5
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 3.1e-132 475.7 312 71.5
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 5.3e-132 474.9 344 66.3
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 5.3e-132 474.9 344 66.3
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 5.3e-132 474.9 323 70.0
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 9.1e-132 474.2 316 70.3
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 1.6e-131 473.4 316 69.9
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 2.6e-131 472.6 342 65.5
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 2.6e-131 472.6 316 71.8
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 2.6e-131 472.6 338 68.0
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 7.7e-131 471.1 316 69.3
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 1.0e-130 470.7 316 69.0
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 1.3e-130 470.3 356 64.6
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 2.9e-130 469.2 307 71.3
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 3.8e-130 468.8 356 64.3
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 8.5e-130 467.6 318 70.4
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 1.1e-129 467.2 354 63.8
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.9e-129 466.5 315 69.2
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 5.5e-129 464.9 389 58.9
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 7.2e-129 464.5 316 69.6
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 9.4e-129 464.2 356 63.8
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.6e-128 463.4 315 69.2
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 3.6e-128 462.2 321 67.9
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.0e-127 460.7 317 68.8
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 1.8e-127 459.9 335 65.4
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 5.7e-126 454.9 292 70.2
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 5.9e-123 444.9 326 63.8
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 2.2e-122 443.0 280 74.6
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 5.0e-122 441.8 319 67.4
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 4.2e-121 438.7 401 56.9
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.8e-119 433.3 279 73.5
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 8.8e-119 431.0 295 69.2
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 3.4e-118 429.1 289 73.0
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.1e-116 424.1 316 64.6
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 1.2e-115 420.6 337 60.5
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 2.9e-109 399.4 321 59.8
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 4.1e-108 395.6 332 59.3
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 9.2e-108 394.4 317 58.7
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 3.9e-106 389.0 321 61.1
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 2.1e-104 383.3 317 58.0
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 2.8e-104 382.9 315 57.1
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.5e-102 377.1 317 59.0
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 1.4e-100 370.5 243 72.4
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 9.2e-100 367.9 304 61.8
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 3.9e-98 362.5 292 60.6
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 2.9e-93 346.3 225 72.0
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 1.7e-90 337.0 353 46.7
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 2.7e-83 313.2 199 73.9
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 3.8e-77 292.7 182 75.8
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 4.9e-77 292.4 220 63.2
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 8.7e-74 281.6 185 72.4
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.6e-67 260.8 304 49.7
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 5.1e-66 255.8 165 72.1
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 6.6e-66 255.4 229 58.1
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 1.8e-63 247.3 144 79.2
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 4.2e-60 236.1 151 74.2
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.3e-56 224.6 140 72.9
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 3.2e-44 183.3 147 58.5
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 4.1e-39 166.4 124 64.5
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 1.4e-36 157.9 99 71.7
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.4e-36 157.9 124 62.1
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 3.2e-36 156.8 110 67.3
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 1.4e-31 141.4 93 71.0
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 1.2e-30 138.3 134 56.0
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 2.0e-30 137.5 91 70.3
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 3.2e-28 130.2 69 82.6
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 2.1e-27 127.5 86 66.3
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 3.6e-27 126.7 75 74.7
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 8.2e-24 115.5 76 68.4
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 1.4e-23 114.8 67 76.1
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 1.7e-21 107.8 169 37.9
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.0e-18 98.6 58 74.1
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 2.0e-17 94.4 72 61.1
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 3.0e-10 70.5 43 72.1
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 2.2e-08 64.3 56 60.7
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 4.8e-08 63.2 88 39.8
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 5.4e-07 59.7 80 47.5


User provided reference genes

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