Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 7.7e-181 637.1 340 100.0
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 9.4e-179 630.2 340 99.4
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 1.9e-83 313.5 323 64.1
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.4e-78 297.4 341 59.8
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 3.3e-67 259.6 401 44.1
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 8.2e-66 255.0 368 49.5
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 8.2e-66 255.0 405 47.9
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 7.7e-64 248.4 404 44.1
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 2.5e-62 243.4 394 45.2
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 4.2e-62 242.7 351 46.7
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 9.4e-62 241.5 352 52.6
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 2.7e-61 240.0 405 47.7
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 1.4e-60 237.7 425 42.8
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 1.1e-59 234.6 404 40.1
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 1.1e-59 234.6 404 40.1
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 2.2e-58 230.3 394 44.4
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 1.1e-57 228.0 427 38.9
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 3.1e-57 226.5 375 42.4
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 9.1e-57 224.9 398 42.0
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.2e-56 224.6 406 45.3
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 1.2e-56 224.6 412 43.7
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 1.2e-56 224.6 399 38.3
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 2.6e-56 223.4 291 49.8
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 4.5e-56 222.6 403 44.2
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 3.8e-55 219.5 407 44.5
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 4.2e-54 216.1 361 46.0
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 7.2e-54 215.3 376 41.0
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 2.7e-53 213.4 390 45.4
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 3.6e-53 213.0 396 39.4
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 8.0e-53 211.8 390 44.6
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 1.4e-52 211.1 384 40.4
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 1.8e-52 210.7 396 37.9
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 5.2e-52 209.1 414 42.8
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 5.2e-52 209.1 382 39.5
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.1e-51 208.0 417 36.9
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 1.5e-51 207.6 398 43.2
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.5e-51 207.6 409 42.8
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 2.0e-51 207.2 390 44.4
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 2.6e-51 206.8 381 39.4
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 3.3e-51 206.5 371 45.6
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 7.5e-51 205.3 403 41.4
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 1.3e-50 204.5 396 43.7
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.3e-50 204.5 414 41.5
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 1.3e-50 204.5 391 39.4
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 1.7e-50 204.1 415 41.9
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.2e-50 203.8 415 42.4
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 2.2e-50 203.8 403 41.2
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.8e-50 203.4 417 41.7
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 8.2e-50 201.8 389 40.1
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 8.2e-50 201.8 365 40.0
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.1e-49 201.4 368 40.8
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 2.4e-49 200.3 365 37.5
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 2.6e-48 196.8 366 39.6
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 3.5e-48 196.4 375 44.3
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 5.9e-48 195.7 411 37.5
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 5.9e-48 195.7 411 40.9
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.7e-47 194.1 411 40.9
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.0e-47 192.6 412 41.3
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 1.9e-46 190.7 417 36.5
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.2e-46 189.9 341 38.4
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.2e-46 189.9 341 38.4
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 7.2e-46 188.7 376 41.5
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 9.4e-46 188.3 400 40.8
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 1.6e-45 187.6 372 45.2
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 4.7e-45 186.0 319 40.8
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 2.3e-44 183.7 368 37.8
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.3e-42 177.9 397 36.0
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 1.3e-42 177.9 367 45.5
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 6.3e-42 175.6 388 40.2
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 6.3e-42 175.6 390 36.7
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 3.1e-41 173.3 355 36.9
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 5.4e-41 172.6 334 39.5
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 9.1e-41 171.8 361 44.3
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 9.1e-41 171.8 361 44.3
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.5e-40 169.9 394 38.3
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 3.5e-40 169.9 394 38.3
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 5.9e-40 169.1 335 38.8
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 7.7e-40 168.7 395 40.5
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 7.7e-40 168.7 354 40.1
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 1.7e-39 167.5 334 38.6
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 5.0e-39 166.0 250 45.2
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 8.5e-39 165.2 365 38.9
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 1.9e-38 164.1 200 51.5
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 4.2e-38 162.9 421 38.7
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 2.1e-37 160.6 252 43.7
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 3.0e-36 156.8 372 38.7
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 1.5e-35 154.5 223 46.2
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 7.5e-35 152.1 357 41.7
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 2.8e-34 150.2 359 39.6
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 4.9e-34 149.4 445 35.1
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 7.0e-33 145.6 359 34.3
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.6e-32 144.4 364 33.8
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.6e-32 144.4 364 33.8
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 1.0e-31 141.7 356 35.1
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 1.7e-31 141.0 338 37.0
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 2.9e-31 140.2 364 39.0
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 8.6e-31 138.7 389 36.8
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.5e-30 137.9 383 35.2
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 4.3e-30 136.3 401 36.2
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 9.5e-30 135.2 357 37.5
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 9.5e-30 135.2 357 37.5
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 6.1e-29 132.5 390 37.4
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 6.1e-29 132.5 366 32.5
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.2e-27 128.3 352 31.5
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 2.0e-27 127.5 365 39.5
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 4.4e-27 126.3 363 31.7
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 4.4e-27 126.3 363 31.7
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 2.2e-26 124.0 381 34.4
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 6.4e-26 122.5 273 37.0
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 8.3e-26 122.1 353 32.9
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 7.0e-25 119.0 251 37.5
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 9.2e-25 118.6 341 33.7
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 3.0e-23 113.6 446 32.3
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 3.9e-23 113.2 346 32.7
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 3.3e-22 110.2 414 30.7
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 1.2e-21 108.2 474 29.7
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 5.2e-20 102.8 255 40.8
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 6.8e-20 102.4 411 27.7
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 8.9e-20 102.1 339 34.5
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 4.4e-19 99.8 389 27.8
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 7.5e-19 99.0 405 29.1
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 9.8e-19 98.6 412 32.3
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 1.7e-18 97.8 402 27.1
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 3.2e-17 93.6 451 30.8
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 3.2e-17 93.6 350 29.4
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 7.0e-17 92.4 356 27.8
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.2e-16 91.7 110 50.0
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 6.6e-15 85.9 152 41.4
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 1.5e-14 84.7 280 31.8
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 1.9e-14 84.3 245 33.9
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 2.5e-14 84.0 291 36.4
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 4.3e-14 83.2 430 26.3
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 9.5e-14 82.0 426 27.2
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 9.5e-14 82.0 430 25.8
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 1.2e-13 81.6 428 25.9
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 1.2e-13 81.6 234 44.0
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 8.1e-13 79.0 239 40.6
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 1.8e-12 77.8 410 29.8
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 2.3e-12 77.4 426 26.8
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 4.0e-12 76.6 377 28.4
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 4.0e-12 76.6 216 31.9
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 2.0e-11 74.3 377 28.1
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 9.8e-11 72.0 414 25.6
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 3.7e-10 70.1 415 31.3
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 1.9e-09 67.8 429 28.0
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 7.1e-09 65.9 377 25.2
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 3.5e-08 63.5 206 29.6
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 5.1e-07 59.7 400 24.8
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.1e-06 58.5 253 30.8
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 3.3e-06 57.0 284 28.9


User provided reference genes

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