Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 2.2e-180 635.6 339 100.0
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 7.2e-179 630.6 340 99.4
vmacro10495 Vaccinium macrocarpon HOM05D004568 ORTHO05D005343 7.9e-85 318.2 322 64.0
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 5.8e-80 302.0 340 60.0
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 5.1e-68 262.3 403 44.2
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 4.3e-67 259.2 404 48.0
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 4.8e-66 255.8 366 49.5
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 2.0e-64 250.4 403 43.7
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.7e-63 247.3 350 46.9
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 3.8e-63 246.1 351 52.7
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 5.0e-63 245.7 394 45.2
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 1.1e-62 244.6 404 47.8
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 9.4e-62 241.5 424 42.7
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 2.5e-59 233.4 396 44.2
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 1.3e-58 231.1 375 42.7
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 2.2e-58 230.3 404 40.3
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 2.2e-58 230.3 404 40.3
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 3.7e-58 229.6 397 42.1
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 4.8e-58 229.2 427 38.6
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 1.1e-57 228.0 291 50.2
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 1.8e-57 227.3 407 45.9
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 9.1e-57 224.9 412 43.7
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 2.6e-56 223.4 403 43.9
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 5.9e-56 222.2 407 44.7
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 7.7e-56 221.9 406 38.2
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 1.9e-54 217.2 395 39.7
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 2.5e-54 216.9 359 46.0
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 5.5e-54 215.7 375 41.1
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 2.1e-53 213.8 413 42.9
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 3.6e-53 213.0 396 37.9
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 4.7e-53 212.6 392 44.6
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 6.1e-53 212.2 384 45.6
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 6.1e-53 212.2 408 42.9
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.0e-52 211.5 416 37.3
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 1.0e-52 211.5 389 44.5
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 2.3e-52 210.3 383 40.7
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 3.0e-52 209.9 386 39.4
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 3.0e-52 209.9 380 40.3
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 5.1e-52 209.1 413 41.6
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 6.7e-52 208.8 414 42.0
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 6.7e-52 208.8 414 42.5
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 1.1e-51 208.0 398 44.2
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.1e-51 208.0 416 41.8
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.5e-51 207.6 396 42.7
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 2.6e-51 206.8 370 45.7
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 3.3e-51 206.5 388 40.2
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 4.4e-51 206.1 396 42.4
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 7.4e-51 205.3 366 37.7
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 1.3e-50 204.5 397 43.1
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 3.7e-50 203.0 384 39.6
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 4.8e-50 202.6 367 40.9
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 8.2e-50 201.8 364 40.1
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.5e-48 197.6 365 39.7
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 7.7e-48 195.3 381 43.6
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 2.9e-47 193.4 375 41.6
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 5.0e-47 192.6 411 41.1
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 6.5e-47 192.2 421 36.6
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 8.5e-47 191.8 411 37.5
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.1e-46 191.4 411 41.1
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.2e-46 189.5 412 41.5
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 4.2e-46 189.5 340 38.5
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 4.2e-46 189.5 340 38.5
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 7.2e-46 188.7 401 41.1
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 1.6e-45 187.6 371 45.6
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 3.6e-45 186.4 323 39.9
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 6.7e-44 182.2 367 37.6
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 2.0e-43 180.6 389 40.9
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 2.6e-43 180.3 389 36.8
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 1.3e-42 177.9 366 45.6
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 1.7e-42 177.6 397 36.3
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.4e-41 174.5 335 40.3
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 1.4e-41 174.5 349 37.8
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 1.8e-41 174.1 352 40.6
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 1.6e-40 171.0 393 38.7
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.6e-40 171.0 393 38.7
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.5e-40 169.5 394 40.9
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 4.5e-40 169.5 334 38.9
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 4.5e-40 169.5 364 39.6
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 7.7e-40 168.7 358 44.1
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 7.7e-40 168.7 358 44.1
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 7.7e-40 168.7 333 38.7
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 1.0e-39 168.3 249 44.6
Lj3P1023T52 Lonicera japonica HOM05D004568 ORTHO05D005343 1.5e-38 164.5 200 52.0
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 7.2e-38 162.2 421 39.0
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 3.6e-37 159.8 252 43.7
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 4.7e-37 159.5 371 39.1
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 2.0e-35 154.1 223 46.2
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 9.7e-35 151.8 364 39.6
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 2.2e-34 150.6 358 39.7
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 6.3e-34 149.1 447 35.3
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.3e-33 146.0 363 34.2
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.3e-33 146.0 363 34.2
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 7.0e-33 145.6 358 34.4
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 3.5e-32 143.3 354 35.3
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 1.0e-31 141.7 361 39.1
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 1.3e-31 141.4 337 37.1
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 3.8e-31 139.8 393 36.9
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 1.5e-30 137.9 401 36.4
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 3.2e-30 136.7 357 37.8
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 3.2e-30 136.7 357 37.8
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 2.1e-29 134.0 392 38.3
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 3.6e-29 133.3 365 32.6
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 4.7e-29 132.9 383 34.7
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.2e-27 128.3 351 31.3
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 2.6e-27 127.1 364 39.6
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 4.4e-27 126.3 380 34.5
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 4.4e-27 126.3 362 31.5
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 4.4e-27 126.3 362 31.5
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 8.3e-26 122.1 352 33.2
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 1.1e-25 121.7 273 37.0
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.4e-25 121.3 250 37.6
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 9.1e-25 118.6 337 33.2
Ah.04g164810 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.3e-23 114.8 345 32.8
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 2.3e-23 114.0 447 32.7
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 2.5e-22 110.5 413 30.5
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 1.2e-21 108.2 473 30.0
Actinidia30170 Actinidia chinensis HOM05D004568 ORTHO05D005343 3.6e-21 106.7 338 34.9
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 8.9e-20 102.1 255 40.8
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 3.4e-19 100.1 405 29.1
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 9.8e-19 98.6 411 32.4
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 1.4e-17 94.7 386 27.5
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 1.4e-17 94.7 450 30.9
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 1.8e-17 94.4 349 29.5
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 9.2e-17 92.0 356 28.1
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 9.2e-17 92.0 364 27.5
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.2e-16 91.7 110 50.0
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 3.5e-16 90.1 377 26.8
Hma1.2p1_0337F.1_g129430 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 5.0e-15 86.3 151 41.7
ECA233G1390 Erigeron canadensis HOM05D004568 ORTHO05D005343 8.6e-15 85.5 279 31.9
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 3.3e-14 83.6 291 36.4
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 3.3e-14 83.6 245 33.9
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 4.3e-14 83.2 429 26.3
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 5.6e-14 82.8 427 26.7
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 9.5e-14 82.0 395 29.6
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 1.2e-13 81.6 427 26.0
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 1.6e-13 81.3 234 44.0
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 4.7e-13 79.7 432 26.2
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 1.4e-12 78.2 239 40.6
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 2.3e-12 77.4 425 26.8
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 3.1e-12 77.0 383 28.5
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 3.1e-12 77.0 216 31.9
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.5e-11 74.7 383 28.2
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 4.4e-11 73.2 410 25.4
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 1.1e-09 68.6 414 30.9
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 5.4e-09 66.2 383 25.3
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 7.0e-09 65.9 428 27.8
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 4.6e-08 63.2 206 29.6
Ah.06g195100 Amaranthus hybridus HOM05D004568 ORTHO05D005343 1.0e-07 62.0 401 24.9
CDE04G2720 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 1.1e-06 58.5 253 30.8
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 5.6e-06 56.2 284 28.9


User provided reference genes

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