Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 6.4e-149 530.8 282 100.0
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 3.5e-94 349.0 232 79.3
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.1e-71 274.2 290 60.0
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.0e-70 270.0 288 57.3
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 5.9e-70 268.5 288 59.0
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 5.9e-70 268.5 286 56.6
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.0e-69 267.7 288 56.9
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.0e-69 267.7 288 56.9
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 2.9e-69 266.2 298 55.4
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 6.6e-69 265.0 289 57.4
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 1.6e-67 260.4 290 56.9
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 2.1e-67 260.0 290 53.8
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.8e-66 256.9 231 68.0
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 4.0e-66 255.8 271 57.2
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 5.2e-66 255.4 228 63.2
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 5.2e-66 255.4 280 55.7
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 6.8e-66 255.0 285 56.1
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 5.8e-65 251.9 272 56.2
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 5.8e-65 251.9 291 56.4
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 2.2e-64 250.0 240 62.9
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 2.2e-64 250.0 229 64.2
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 3.7e-64 249.2 231 64.5
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 1.1e-63 247.7 309 51.8
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 1.9e-63 246.9 291 56.4
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 4.1e-63 245.7 292 54.8
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 4.1e-63 245.7 292 52.4
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 5.4e-63 245.4 271 56.5
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 5.4e-63 245.4 283 57.6
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 9.2e-63 244.6 294 59.2
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 1.2e-62 244.2 225 63.6
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 7.8e-62 241.5 313 52.7
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 1.3e-61 240.7 287 54.0
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.6e-59 233.8 232 62.9
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.4e-58 230.7 229 59.0
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 1.2e-57 227.6 275 52.4
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 4.4e-57 225.7 288 50.7
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 4.4e-57 225.7 300 54.0
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 5.8e-57 225.3 274 54.7
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 7.5e-57 224.9 309 48.9
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 3.7e-56 222.6 273 55.3
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 1.1e-55 221.1 305 51.8
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 7.1e-55 218.4 238 56.3
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.2e-54 217.6 227 59.5
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 2.7e-54 216.5 287 51.9
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 6.0e-54 215.3 227 62.1
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 1.3e-53 214.2 246 55.3
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 1.3e-53 214.2 302 50.0
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 2.3e-53 213.4 288 51.4
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 8.6e-53 211.5 248 56.0
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 8.6e-53 211.5 298 53.0
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 1.5e-52 210.7 274 54.0
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 6.2e-51 205.3 234 54.3
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 6.2e-51 205.3 280 47.5
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.2e-50 202.2 333 48.9
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.2e-50 202.2 333 48.9
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 1.2e-49 201.1 220 57.7
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.2e-49 201.1 247 51.4
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 1.5e-49 200.7 230 57.4
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 2.6e-49 199.9 290 49.0
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 3.4e-49 199.5 259 51.4
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 1.3e-48 197.6 299 49.5
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 1.7e-48 197.2 277 49.5
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 3.7e-48 196.1 251 51.4
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.1e-47 194.5 340 48.2
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.1e-47 194.5 230 53.9
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 1.4e-47 194.1 314 51.0
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 2.1e-46 190.3 292 54.1
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 4.6e-46 189.1 236 53.4
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 1.3e-45 187.6 197 58.9
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 3.0e-45 186.4 272 48.9
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 2.5e-44 183.3 274 47.4
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 2.5e-44 183.3 194 59.3
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 1.6e-43 180.6 271 47.2
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 2.8e-43 179.9 273 46.5
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 2.8e-43 179.9 293 44.4
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 2.8e-43 179.9 293 44.4
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 6.2e-43 178.7 272 46.3
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 8.1e-43 178.3 266 49.2
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 1.1e-42 177.9 209 53.6
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 1.1e-42 177.9 248 50.8
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 1.8e-42 177.2 250 50.0
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 3.1e-42 176.4 258 50.0
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 6.8e-42 175.3 272 45.2
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 1.5e-41 174.1 293 44.0
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.5e-41 174.1 230 50.4
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 2.0e-41 173.7 273 46.2
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 2.6e-41 173.3 271 46.1
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 1.3e-40 171.0 206 55.3
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.7e-40 170.6 281 45.2
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 2.2e-40 170.2 246 49.6
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 6.4e-40 168.7 333 45.0
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 1.9e-39 167.2 207 55.6
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 5.4e-39 165.6 230 47.8
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 2.7e-38 163.3 269 45.0
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 3.5e-38 162.9 266 44.7
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 4.6e-38 162.5 234 52.6
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 7.3e-36 155.2 160 55.6
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 2.8e-35 153.3 217 49.8
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 6.2e-35 152.1 213 47.9
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 8.1e-35 151.8 226 50.0
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 8.1e-35 151.8 236 45.3
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 1.4e-34 151.0 249 43.8
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 1.8e-34 150.6 284 40.5
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.5e-33 147.5 197 50.3
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 5.8e-33 145.6 142 60.6
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.3e-32 144.4 211 48.3
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 2.9e-32 143.3 236 42.8
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 8.4e-32 141.7 234 44.4
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.1e-31 141.4 224 48.2
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 4.2e-31 139.4 224 44.2
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 9.3e-31 138.3 161 56.5
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 1.6e-30 137.5 280 42.1
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 3.0e-29 133.3 226 43.8
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 3.0e-29 133.3 147 54.4
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 3.0e-29 133.3 147 54.4
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 1.1e-28 131.3 279 41.6
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.5e-28 131.0 77 83.1
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 2.5e-28 130.2 220 42.7
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 4.3e-28 129.4 202 46.0
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 3.6e-27 126.3 221 43.4
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 3.1e-26 123.2 95 68.4
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 5.3e-26 122.5 223 40.8
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.5e-25 120.9 238 44.5
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 3.4e-25 119.8 226 40.3
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 7.6e-25 118.6 87 69.0
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 2.2e-24 117.1 223 41.3
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 2.2e-24 117.1 231 42.9
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.1e-23 114.8 207 49.3
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 3.2e-23 113.2 223 42.2
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 9.3e-23 111.7 221 39.8
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 1.6e-22 110.9 249 36.9
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 2.1e-22 110.5 298 34.2
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 4.6e-22 109.4 226 38.9
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 6.0e-22 109.0 221 40.7
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 7.9e-22 108.6 223 39.5
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 7.9e-22 108.6 219 39.7
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 7.9e-22 108.6 219 39.7
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 4.3e-20 102.8 224 38.4
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 6.9e-18 95.5 182 46.7
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 5.8e-17 92.4 165 46.1
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 1.7e-16 90.9 162 45.7
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 4.9e-16 89.4 91 57.1
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 4.6e-14 82.8 227 37.4
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 1.0e-13 81.6 194 38.1
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 5.1e-13 79.3 228 35.5
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 6.7e-13 79.0 276 37.3
Zm00001eb125440 Zea mays HOM05D004123 ORTHO05D004768 2.5e-12 77.0 172 38.4
arahy.Tifrunner.gnm1.ann1.1XFG43 Arachis hypogaea HOM05D004123 ORTHO05D004768 9.6e-12 75.1 270 34.1
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.3e-11 74.7 96 50.0
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 1.4e-10 71.2 47 70.2
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 1.4e-10 71.2 47 70.2
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 6.9e-10 68.9 97 44.3
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 6.9e-10 68.9 146 40.4
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 3.4e-09 66.6 218 34.9
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.0e-08 65.1 66 51.5
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.7e-08 64.3 113 37.2
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 2.9e-08 63.5 107 43.9
DCAR_007247 Daucus carota HOM05D004123 ORTHO05D004768 3.8e-08 63.2 154 40.3
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 6.5e-08 62.4 177 32.8
Ca_11169_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 4.2e-07 59.7 230 30.4
A06p08360 Brassica napus HOM05D004123 ORTHO05D004768 9.3e-07 58.5 221 31.2
BraA06t24033Z Brassica rapa HOM05D004123 ORTHO05D004768 1.2e-06 58.2 221 31.2
C05p09900 Brassica napus HOM05D004123 ORTHO05D004768 3.5e-06 56.6 222 31.1
CDE06G2234 Ceratophyllum demersum HOM05D000333 ORTHO05D000190 4.6e-06 56.2 78 39.7
MBI19_g17431_MAGBIO Magnolia biondii HOM05D003047 ORTHO05D000627 4.6e-06 56.2 93 36.6
AL1G40270 Arabidopsis lyrata HOM05D000333 ORTHO05D000190 6.1e-06 55.8 142 31.7
BolC5t29729H Brassica oleracea HOM05D004123 ORTHO05D004768 6.1e-06 55.8 221 30.8
BolC9t53427H Brassica oleracea HOM05D000333 ORTHO05D000190 6.1e-06 55.8 83 43.4


User provided reference genes

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