Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 4.2e-156 554.7 283 100.0
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 1.2e-62 244.2 307 50.5
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 8.6e-61 238.0 309 49.2
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.5e-60 237.3 309 49.5
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.6e-49 199.9 300 47.0
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.2e-48 196.8 301 46.5
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.4e-47 193.4 319 43.3
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 7.1e-47 191.8 300 46.3
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.5e-46 189.5 319 43.3
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 5.1e-45 185.7 312 40.1
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 6.6e-45 185.3 312 40.1
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 2.5e-44 183.3 303 41.9
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 1.6e-43 180.6 294 41.8
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 2.1e-43 180.3 319 42.0
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 4.8e-43 179.1 338 40.5
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 2.4e-42 176.8 302 42.7
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 4.0e-42 176.0 297 43.8
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 9.0e-42 174.9 275 46.2
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 9.0e-42 174.9 310 39.7
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 9.0e-42 174.9 341 38.1
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 1.2e-41 174.5 308 40.3
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 5.8e-41 172.2 303 39.9
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 6.4e-40 168.7 300 37.0
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 1.1e-39 167.9 294 40.1
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 1.2e-38 164.5 307 38.8
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 2.7e-38 163.3 306 37.6
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 7.9e-38 161.8 306 37.3
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 1.3e-37 161.0 315 39.0
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 3.0e-37 159.8 315 40.0
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 3.9e-37 159.5 324 38.9
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 8.7e-37 158.3 322 39.8
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 8.7e-37 158.3 293 38.9
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.9e-36 157.1 300 40.0
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 2.5e-36 156.8 303 39.9
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 4.3e-36 156.0 275 40.7
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 5.6e-36 155.6 236 46.2
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 1.3e-35 154.5 315 36.5
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 2.1e-35 153.7 305 38.7
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 2.1e-35 153.7 309 38.2
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 2.8e-35 153.3 319 38.2
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 4.8e-35 152.5 293 40.3
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 6.2e-35 152.1 301 39.2
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.4e-34 151.0 285 38.6
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 2.4e-34 150.2 293 39.9
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 4.0e-34 149.4 282 38.3
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 5.3e-34 149.1 301 38.5
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 5.3e-34 149.1 275 38.9
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 6.9e-34 148.7 298 38.9
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 1.2e-33 147.9 313 37.1
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.2e-33 147.9 301 38.9
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 2.0e-33 147.1 283 38.9
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 4.5e-33 146.0 295 37.6
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 7.6e-33 145.2 305 35.4
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 9.9e-33 144.8 301 38.5
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.3e-32 144.4 301 38.2
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 1.3e-32 144.4 298 38.9
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.2e-32 143.7 301 38.5
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 4.9e-32 142.5 315 39.4
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 3.2e-31 139.8 308 38.6
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 4.2e-31 139.4 304 36.5
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 9.3e-31 138.3 309 37.9
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 1.2e-30 137.9 282 35.8
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 1.2e-30 137.9 286 36.0
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 1.6e-30 137.5 303 38.6
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 2.7e-30 136.7 297 36.7
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 3.5e-30 136.3 306 35.9
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 4.6e-30 136.0 310 37.1
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 4.6e-30 136.0 314 36.6
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 4.6e-30 136.0 317 35.6
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 6.0e-30 135.6 301 37.5
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 6.0e-30 135.6 309 35.9
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 7.9e-30 135.2 289 38.1
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 1.0e-29 134.8 298 36.6
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 1.8e-29 134.0 313 35.8
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 3.9e-29 132.9 300 36.7
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 3.9e-29 132.9 303 35.6
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 5.1e-29 132.5 298 35.9
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 5.1e-29 132.5 298 35.9
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 8.7e-29 131.7 313 35.5
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 8.7e-29 131.7 298 35.9
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 8.7e-29 131.7 298 35.9
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 8.7e-29 131.7 305 36.7
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.1e-28 131.3 321 35.8
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 1.9e-28 130.6 294 39.1
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 2.5e-28 130.2 311 34.4
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.3e-28 129.8 278 36.3
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 7.4e-28 128.6 285 35.4
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.6e-27 127.5 313 35.5
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 3.7e-27 126.3 297 38.0
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 6.2e-27 125.6 285 34.7
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 8.2e-27 125.2 284 36.3
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 1.1e-26 124.8 304 34.2
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 1.8e-26 124.0 340 33.2
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 1.8e-26 124.0 195 46.2
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 3.1e-26 123.2 303 35.3
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 4.0e-26 122.9 304 35.2
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 4.0e-26 122.9 314 35.4
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 5.3e-26 122.5 293 37.9
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 3.4e-25 119.8 283 37.5
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 4.5e-25 119.4 312 33.7
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 7.6e-25 118.6 303 35.6
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 7.6e-25 118.6 304 34.2
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 1.3e-24 117.9 296 34.5
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 3.2e-23 113.2 277 34.3
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 5.5e-23 112.5 300 32.0
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 1.6e-22 110.9 308 35.4
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.6e-22 110.9 303 34.0
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 2.1e-22 110.5 311 32.2
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 3.5e-22 109.8 267 36.7
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 6.0e-22 109.0 308 33.1
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 1.0e-21 108.2 264 36.7
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 3.9e-21 106.3 255 38.0
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.9e-20 104.0 285 34.7
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 1.6e-19 100.9 276 35.9
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 2.2e-19 100.5 287 36.6
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 4.8e-19 99.4 278 36.7
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 4.8e-19 99.4 308 30.8
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 2.4e-18 97.1 282 35.1
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 5.3e-18 95.9 279 34.1
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 6.9e-18 95.5 258 35.3
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 1.5e-17 94.4 166 39.2
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 2.0e-17 94.0 257 37.7
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 2.6e-17 93.6 169 42.0
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 2.6e-17 93.6 257 35.0
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 4.5e-17 92.8 243 35.0
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 5.9e-17 92.4 287 34.1
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 5.9e-17 92.4 270 34.4
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 5.9e-17 92.4 270 34.4
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 1.0e-16 91.7 267 34.8
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 1.0e-16 91.7 200 34.5
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 1.0e-16 91.7 282 30.9
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 2.2e-16 90.5 279 30.1
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 5.0e-16 89.4 262 37.4
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 5.0e-16 89.4 299 31.4
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 2.5e-15 87.0 279 33.7
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 3.2e-15 86.7 304 28.6
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 2.1e-14 84.0 288 28.8
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 4.6e-14 82.8 274 31.4
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 6.1e-14 82.4 299 30.1
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 7.9e-14 82.0 252 32.9
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 3.0e-13 80.1 275 29.5
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 3.3e-12 76.6 166 42.8
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 4.3e-12 76.3 267 31.8
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.3e-11 74.7 299 28.1
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 2.8e-11 73.6 298 29.9
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 8.2e-11 72.0 224 34.4
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 1.2e-09 68.2 244 31.1
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 1.5e-09 67.8 140 37.9
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 1.0e-08 65.1 142 35.9
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 2.2e-08 63.9 237 31.6
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 2.5e-07 60.5 262 27.1
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.7e-06 57.0 166 38.0


User provided reference genes

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