Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 5.6e-231 803.9 402 100.0
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 5.1e-200 701.0 402 87.8
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 7.2e-186 654.1 402 80.8
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 1.8e-184 649.4 402 80.6
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 3.7e-174 615.1 402 75.9
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 3.7e-174 615.1 402 75.9
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 4.8e-174 614.8 402 75.9
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 2.2e-171 605.9 402 74.1
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 2.9e-171 605.5 402 75.4
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 2.9e-171 605.5 401 74.6
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 2.9e-171 605.5 401 74.6
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 3.8e-171 605.1 399 76.2
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 1.1e-170 603.6 395 75.4
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 2.5e-170 602.4 401 75.1
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 1.2e-169 600.1 392 75.0
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 1.2e-169 600.1 396 76.3
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 1.0e-168 597.0 402 74.1
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 2.0e-167 592.8 401 75.1
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 3.3e-167 592.0 401 74.1
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 5.7e-167 591.3 402 73.1
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 5.7e-167 591.3 392 74.7
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 7.5e-167 590.9 401 72.8
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 9.7e-167 590.5 402 73.1
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 1.3e-166 590.1 402 71.9
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 2.2e-166 589.3 401 73.6
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 2.2e-166 589.3 401 73.6
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 3.7e-166 588.6 399 73.9
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 6.3e-166 587.8 394 74.1
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 9.1e-165 583.9 402 73.1
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 1.2e-164 583.6 404 72.0
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 7.7e-164 580.9 410 71.2
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.0e-163 580.5 402 71.1
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 1.7e-163 579.7 402 73.1
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 2.9e-163 578.9 402 72.1
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 3.8e-163 578.6 411 71.3
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 3.8e-163 578.6 402 70.9
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 6.5e-163 577.8 401 71.1
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.1e-162 577.0 399 71.9
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 3.2e-162 575.5 397 71.8
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 3.2e-162 575.5 402 70.4
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 4.2e-162 575.1 402 71.1
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 3.6e-161 572.0 402 68.7
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 4.7e-161 571.6 409 70.4
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 4.7e-161 571.6 400 70.0
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 6.1e-161 571.2 401 70.8
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 3.0e-160 568.9 402 70.1
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 4.0e-160 568.5 402 70.4
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 4.0e-160 568.5 402 69.7
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 8.8e-160 567.4 406 70.4
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 3.4e-159 565.5 402 70.6
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 7.5e-159 564.3 396 69.9
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 1.7e-158 563.1 404 69.8
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 3.7e-158 562.0 401 70.8
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 1.1e-157 560.5 400 69.5
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 1.4e-157 560.1 405 69.4
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 1.4e-157 560.1 399 70.7
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 1.8e-157 559.7 396 69.2
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 5.4e-157 558.1 397 69.5
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 5.4e-157 558.1 402 69.4
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 8.5e-155 550.8 395 68.9
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 1.5e-154 550.1 399 68.2
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 3.2e-154 548.9 400 68.0
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 3.2e-154 548.9 393 68.7
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 3.2e-154 548.9 403 68.7
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 7.2e-154 547.7 534 56.6
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 2.1e-153 546.2 402 67.2
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 8.0e-153 544.3 400 67.8
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 1.8e-152 543.1 396 68.4
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 1.8e-152 543.1 396 68.4
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 4.0e-152 542.0 399 71.2
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 5.2e-152 541.6 394 68.5
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 5.2e-152 541.6 394 68.3
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 2.6e-151 539.3 400 67.8
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 2.6e-151 539.3 401 68.3
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 5.7e-151 538.1 401 66.8
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 1.7e-150 536.6 399 64.9
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 1.7e-150 536.6 399 65.7
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 5.4e-149 531.6 446 63.0
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 5.4e-149 531.6 351 74.9
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 5.4e-149 531.6 399 67.9
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 1.2e-148 530.4 406 65.8
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 1.1e-146 523.9 400 65.0
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 1.2e-145 520.4 401 64.6
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 2.1e-145 519.6 372 69.9
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 3.6e-145 518.8 399 64.7
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 5.2e-144 515.0 402 64.9
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 2.6e-143 512.7 401 66.8
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 3.4e-143 512.3 395 65.3
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 5.7e-143 511.5 363 70.8
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 7.5e-143 511.1 400 64.8
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 1.3e-142 510.4 402 66.4
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 1.7e-142 510.0 398 65.1
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 4.9e-142 508.4 401 63.3
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 1.8e-141 506.5 400 62.8
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 7.8e-140 501.1 397 63.0
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 5.4e-133 478.4 326 74.5
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 2.0e-132 476.5 326 72.4
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.5e-130 470.3 306 75.5
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 1.2e-129 467.2 328 74.4
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 6.8e-128 461.5 348 69.3
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.6e-127 459.5 306 73.9
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.7e-124 449.5 322 70.5
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 1.8e-120 436.8 401 59.4
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 1.2e-113 414.1 392 53.3
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 2.4e-112 409.8 396 53.3
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 6.4e-110 401.7 404 50.2
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 2.5e-106 389.8 233 81.1
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 5.6e-106 388.7 395 52.4
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 4.8e-105 385.6 228 80.7
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 1.1e-104 384.4 280 68.9
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 1.1e-104 384.4 398 49.7
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 1.6e-97 360.5 282 63.5
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 9.6e-90 334.7 251 69.7
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 1.6e-89 334.0 284 60.2
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 6.3e-65 252.3 237 56.5
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 3.1e-64 250.0 153 76.5
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 6.1e-60 235.7 154 77.9
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 2.9e-54 216.9 410 33.7
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 1.9e-53 214.2 431 35.3
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 3.6e-52 209.9 431 33.9
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 2.8e-49 200.3 154 61.7
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 1.2e-44 184.9 115 78.3
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 2.5e-37 160.6 107 68.2
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 2.2e-25 120.9 199 35.7
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 3.9e-22 110.2 163 44.2
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 3.6e-20 103.6 66 74.2
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 5.2e-19 99.8 174 36.2
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 4.4e-18 96.7 167 35.3
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 1.9e-16 91.3 68 66.2
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 2.4e-16 90.9 115 46.1
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 1.9e-13 81.3 70 52.9
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 8.1e-12 75.9 70 54.3
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 2.3e-11 74.3 36 97.2
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 3.4e-10 70.5 53 71.7
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 6.4e-09 66.2 129 31.8
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 1.2e-07 62.0 92 34.8


User provided reference genes

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