Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1700.6 824 100.0
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1441.8 836 83.7
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1427.2 831 82.9
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1392.9 831 81.7
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 0.0e+00 1380.9 733 91.8
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1365.1 836 78.3
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1357.8 836 77.8
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1353.6 837 77.1
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1345.5 829 77.2
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1345.5 831 76.8
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1337.0 833 75.4
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1335.5 831 77.6
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1333.9 781 83.2
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1333.5 831 76.4
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1324.7 831 77.3
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 0.0e+00 1318.1 961 67.7
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1316.2 835 75.0
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1314.3 840 76.2
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1311.2 835 75.2
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1307.0 830 75.1
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1305.0 829 74.7
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1304.7 830 74.8
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1303.9 839 75.3
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1303.9 831 74.7
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1302.3 830 75.1
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1300.8 830 75.1
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1299.6 831 74.1
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1299.6 829 75.8
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1298.5 833 74.3
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1297.3 822 77.0
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1297.3 836 73.8
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1294.3 835 74.3
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1293.9 835 73.7
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1293.5 835 74.3
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1292.3 833 74.5
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1290.4 830 76.0
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1289.6 832 73.7
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1289.6 831 74.7
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1285.4 833 74.1
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1285.0 829 74.4
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1285.0 835 73.8
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1284.2 830 75.2
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1282.7 834 74.1
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1282.7 831 74.5
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1282.3 830 75.1
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1281.9 830 75.1
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1280.0 839 74.5
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1279.6 835 73.3
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1276.2 836 74.4
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1275.4 830 74.8
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1275.0 836 74.5
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1273.1 835 73.9
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1267.3 830 73.5
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1261.9 839 73.3
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 0.0e+00 1260.7 836 72.1
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1260.4 840 72.3
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 0.0e+00 1259.2 833 72.3
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1258.8 837 72.2
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 0.0e+00 1258.4 834 72.3
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1256.9 837 71.8
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1255.0 838 72.3
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1254.2 838 72.7
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1250.7 839 72.7
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1243.4 841 72.3
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1241.1 833 71.5
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 0.0e+00 1238.8 827 71.6
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1235.7 851 70.3
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1234.6 873 69.8
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 0.0e+00 1231.9 830 72.9
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1230.3 848 71.5
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1227.6 836 70.7
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1225.7 836 71.8
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 0.0e+00 1224.2 837 70.5
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1212.6 855 70.1
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 0.0e+00 1198.0 937 64.2
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 0.0e+00 1191.4 836 69.9
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 0.0e+00 1185.6 837 68.6
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 0.0e+00 1175.6 834 68.3
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 0.0e+00 1167.9 841 67.4
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 0.0e+00 1162.1 836 66.4
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1158.3 831 68.0
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 0.0e+00 1156.7 833 67.5
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1156.4 834 67.3
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1154.4 834 67.5
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 0.0e+00 1153.7 835 67.2
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 0.0e+00 1153.3 830 67.5
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 0.0e+00 1151.7 837 66.8
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 0.0e+00 1147.5 834 66.9
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 0.0e+00 1144.8 837 67.0
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 0.0e+00 1140.2 839 66.6
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 0.0e+00 1133.6 758 71.6
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 0.0e+00 1130.5 839 66.0
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 0.0e+00 1120.5 833 64.8
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 0.0e+00 1115.5 834 62.9
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 0.0e+00 1111.7 833 64.6
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 0.0e+00 1090.5 834 64.5
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 1.0e-303 1046.6 812 62.8
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 1.2e-299 1033.1 666 74.3
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 1.7e-282 976.1 645 72.6
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.1e-280 969.1 580 79.8
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 1.3e-271 939.9 832 57.8
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 8.5e-250 867.5 894 50.1
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 8.8e-247 857.4 857 51.6
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 4.2e-241 838.6 854 50.8
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 6.1e-224 781.6 827 50.5
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 6.6e-178 628.6 398 73.9
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 5.6e-177 625.5 464 65.5
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 6.9e-151 538.9 406 67.0
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 4.6e-139 499.6 360 65.6
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 2.0e-134 484.2 264 86.7
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 2.6e-134 483.8 358 62.3
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 1.9e-108 397.9 737 37.6
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 7.0e-103 379.4 237 76.8
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 1.7e-101 374.8 524 44.5
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 2.5e-100 370.9 290 66.9
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 7.2e-100 369.4 864 31.2
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 2.3e-98 364.4 1180 26.7
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 4.4e-97 360.1 193 88.1
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 4.4e-97 360.1 1014 28.9
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 2.8e-96 357.5 298 58.7
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.4e-95 355.1 275 62.5
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.8e-93 347.1 195 82.1
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 8.3e-88 329.3 192 80.2
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 5.4e-87 326.6 231 72.3
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 1.1e-68 265.8 565 33.8
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 2.4e-50 204.9 195 53.3
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 2.0e-49 201.8 576 28.8
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 2.0e-49 201.8 576 28.8
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 9.9e-49 199.5 129 74.4
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.3e-45 189.1 158 58.9
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 5.4e-39 167.2 99 74.7
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.6e-38 165.6 101 74.3
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 6.2e-35 153.7 96 75.0
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.1e-31 142.9 78 80.8
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.0e-29 136.3 75 84.0
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 1.4e-26 125.9 72 77.8
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 2.6e-25 121.7 196 40.3
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 1.9e-23 115.5 69 78.3
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 2.3e-21 108.6 53 86.8
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 3.0e-21 108.2 112 51.8
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 8.7e-21 106.7 59 72.9
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 2.5e-20 105.1 92 56.5
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 4.3e-20 104.4 89 53.9
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 5.7e-20 104.0 64 76.6
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 4.1e-18 97.8 112 50.0
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 4.6e-14 84.3 59 55.9
Sp1g36390 Schrenkiella parvula HOM05D004962 ORTHO05D006249 5.7e-12 77.4 107 39.3
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 2.4e-10 72.0 126 42.1
RcHm_v2.0_Chr7g0200531 Rosa chinensis HOM05D004962 ORTHO05D006249 4.5e-09 67.8 86 44.2
Psat4g062800 Pisum sativum HOM05D000464 ORTHO05D006292 5.9e-09 67.4 145 31.0
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 1.3e-08 66.2 171 29.2
SHI17349 Sapria himalayana HOM05D000464 ORTHO05D006292 2.2e-08 65.5 144 29.2
arahy.Tifrunner.gnm1.ann1.733L1L Arachis hypogaea HOM05D000464 ORTHO05D006292 2.9e-08 65.1 145 30.3
Glyma.17G126200 Glycine max HOM05D000464 ORTHO05D006292 2.9e-08 65.1 145 30.3
Lalb_Chr07g0183151 Lupinus albus HOM05D000464 ORTHO05D006292 2.9e-08 65.1 145 31.0
arahy.Tifrunner.gnm1.ann1.IR4XNQ Arachis hypogaea HOM05D000464 ORTHO05D006292 5.0e-08 64.3 145 30.3
CSS0041467 Camellia sinensis var. sinensis HOM05D000464 ORTHO05D000408 5.0e-08 64.3 171 28.7
TPR.G37555 Trifolium pratense HOM05D000464 ORTHO05D006292 6.5e-08 63.9 146 30.8
VMungo1215G0985 Vigna mungo HOM05D000464 ORTHO05D006292 6.5e-08 63.9 145 29.0
Glyma.05G043700 Glycine max HOM05D000464 ORTHO05D006292 8.5e-08 63.5 145 29.7
Medtr4g104380 Medicago truncatula HOM05D000464 ORTHO05D006292 8.5e-08 63.5 145 29.0
Hund05615 Selenicereus undatus HOM05D000464 ORTHO05D006292 1.1e-07 63.2 144 30.6
Ca_19433_v3 Cicer arietinum L. HOM05D000464 ORTHO05D006292 1.4e-07 62.8 145 29.7
Sabra15G0110600 Salix brachista HOM05D000464 ORTHO05D000408 4.2e-07 61.2 171 28.1
Haze_07635 Corylus avellana HOM05D000464 ORTHO05D006292 5.5e-07 60.8 171 28.7
A10p08470 Brassica napus HOM05D000464 ORTHO05D006292 7.2e-07 60.5 145 29.7
BraSC37t46158Z Brassica rapa HOM05D000464 ORTHO05D006292 7.2e-07 60.5 145 29.7
Cc04_g10810 Coffea canephora HOM05D000464 ORTHO05D006292 7.2e-07 60.5 145 28.3
AUR62022080 Chenopodium quinoa HOM05D000464 ORTHO05D006292 9.4e-07 60.1 146 30.8
Sp6g12330 Schrenkiella parvula HOM05D000464 ORTHO05D006292 9.4e-07 60.1 187 26.7
CARHR258380 Cardamine hirsuta HOM05D000464 ORTHO05D006292 1.6e-06 59.3 187 26.7
DCAR_026196 Daucus carota HOM05D000464 ORTHO05D006292 2.1e-06 58.9 145 30.3
PGR083G1837 Punica granatum HOM05D000464 ORTHO05D006292 2.7e-06 58.5 123 31.7
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 3.6e-06 58.2 187 26.2
AUR62001250 Chenopodium quinoa HOM05D000464 ORTHO05D006292 3.6e-06 58.2 146 30.1
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 3.6e-06 58.2 145 29.0
EL10Ac7g18034 Beta vulgaris HOM05D000464 ORTHO05D006292 4.7e-06 57.8 146 30.1
Sc04g0001170 Simmondsia chinensis HOM05D000464 ORTHO05D006292 7.9e-06 57.0 138 29.7


User provided reference genes

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