Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 1.0e-268 929.5 470 100.0
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 2.3e-204 715.7 468 79.9
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 1.2e-200 703.4 470 78.7
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 4.3e-182 641.7 471 70.9
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 2.6e-179 632.5 457 71.8
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 3.2e-177 625.5 463 68.5
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 5.4e-177 624.8 459 69.7
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 9.3e-177 624.0 467 70.0
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 1.2e-176 623.6 470 68.5
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 1.2e-176 623.6 466 68.2
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 4.6e-176 621.7 470 69.1
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 6.0e-176 621.3 459 69.7
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 7.9e-176 620.9 458 68.8
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 1.0e-175 620.5 461 67.9
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 1.1e-174 617.1 458 69.4
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 1.5e-174 616.7 466 67.6
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 1.9e-174 616.3 458 69.2
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 5.6e-174 614.8 543 61.0
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 9.6e-174 614.0 472 66.9
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 3.1e-172 609.0 464 67.9
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 4.0e-172 608.6 464 67.9
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 4.0e-172 608.6 466 67.6
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 5.3e-172 608.2 457 68.3
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 1.5e-171 606.7 473 67.0
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 3.4e-171 605.5 501 68.5
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 4.5e-171 605.1 456 67.1
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 7.6e-171 604.4 466 67.6
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 9.9e-171 604.0 470 65.5
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 1.7e-170 603.2 450 68.7
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 3.8e-170 602.1 470 65.7
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 4.9e-170 601.7 461 67.5
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 4.9e-170 601.7 494 65.6
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 2.5e-169 599.4 470 66.0
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 7.1e-169 597.8 468 65.2
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 7.1e-169 597.8 466 65.2
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 1.6e-168 596.7 498 64.7
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 3.5e-168 595.5 453 66.0
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 1.3e-167 593.6 469 65.2
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 3.0e-167 592.4 454 66.3
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 5.1e-167 591.7 470 64.0
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 2.5e-166 589.3 465 64.3
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 4.3e-166 588.6 453 65.8
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 1.3e-165 587.0 458 65.3
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 2.4e-164 582.8 479 63.0
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 4.5e-163 578.6 468 62.8
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 7.6e-163 577.8 468 62.8
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 4.9e-162 575.1 470 62.1
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 1.4e-161 573.5 470 62.6
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 5.1e-159 565.1 466 64.2
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 4.3e-158 562.0 462 63.4
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 5.7e-158 561.6 456 63.2
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 5.7e-158 561.6 466 61.4
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 9.7e-158 560.8 466 63.9
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.6e-157 560.1 444 64.4
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 6.3e-157 558.1 533 57.4
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 1.8e-156 556.6 466 63.5
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 1.2e-155 553.9 431 67.7
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 2.6e-155 552.7 409 68.0
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 1.3e-154 550.4 410 69.3
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 6.1e-152 541.6 472 59.7
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 1.8e-151 540.0 459 63.0
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 4.3e-150 535.4 444 63.1
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 8.2e-149 531.2 450 59.8
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 1.1e-148 530.8 470 61.9
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 4.1e-148 528.9 374 74.6
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 5.3e-148 528.5 488 56.6
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 2.0e-147 526.6 463 59.4
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 2.6e-147 526.2 467 61.2
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 1.9e-145 520.0 388 69.1
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 1.6e-144 516.9 397 67.0
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 7.4e-142 508.1 379 67.8
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 3.1e-140 502.7 383 68.1
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 1.5e-139 500.4 499 56.1
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 3.2e-129 466.1 472 53.8
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 1.8e-119 433.7 304 71.7
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 1.1e-116 424.5 445 52.8
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 1.2e-115 421.0 458 49.3
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 7.7e-115 418.3 336 64.3
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 8.9e-111 404.8 326 65.0
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 2.6e-110 403.3 324 65.7
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.5e-107 392.5 457 46.4
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 1.3e-106 391.0 323 64.1
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 2.9e-106 389.8 473 45.2
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 4.9e-101 372.5 460 45.7
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.0e-99 367.1 465 44.1
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 3.6e-96 356.3 469 42.2
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 4.0e-95 352.8 268 68.3
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 1.4e-92 344.4 573 39.1
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 3.5e-91 339.7 232 72.4
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 5.2e-87 325.9 323 54.2
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 3.4e-86 323.2 247 64.0
Dinv04888 Davidia involucrata HOM05D005467 ORTHO05D006523 4.4e-86 322.8 196 82.1
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 2.3e-82 310.5 450 38.2
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 5.1e-82 309.3 353 48.4
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 6.2e-80 302.4 457 37.4
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 1.1e-79 301.6 497 37.2
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.5e-78 297.7 452 38.1
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 3.4e-78 296.6 446 37.9
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 2.2e-77 293.9 455 38.7
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 4.9e-77 292.7 454 37.2
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 4.4e-70 269.6 456 36.0
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.1e-63 248.4 211 62.1
Haze_11049 Corylus avellana HOM05D005467 ORTHO05D006523 4.2e-60 236.5 170 72.4
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.0e-58 230.3 451 33.0
Cc11_g09120 Coffea canephora HOM05D005467 ORTHO05D006523 3.3e-57 226.9 150 73.3
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 4.0e-55 219.9 409 35.9
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 9.0e-55 218.8 390 35.1
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 2.0e-54 217.6 211 58.8
PRCOL_00002109 Prasinoderma coloniale HOM05D005467 ORTHO05D006523 4.0e-47 193.4 439 33.3
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 8.4e-45 185.7 143 69.2
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 1.1e-44 185.3 474 30.2
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 1.3e-40 171.8 439 28.9
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.2e-40 171.0 364 32.4
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 2.8e-40 170.6 284 39.8
Lsat_1_v5_gn_3_107041 Lactuca sativa HOM05D005467 ORTHO05D006523 5.3e-39 166.4 242 45.9
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.3e-37 161.8 352 31.0
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 5.1e-34 149.8 119 65.5
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 5.1e-34 149.8 135 58.5
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 2.5e-33 147.5 141 59.6
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 7.4e-33 146.0 200 39.5
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 9.7e-33 145.6 137 57.7
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 1.3e-32 145.2 137 57.7
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.0e-30 137.9 145 49.7
Nitab4.5_0019054g0020 Nicotiana tabacum HOM05D005467 ORTHO05D006523 3.4e-30 137.1 161 47.2
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.5e-30 136.7 141 50.4
Nitab4.5_0002820g0070 Nicotiana tabacum HOM05D005467 ORTHO05D006523 6.1e-27 126.3 144 47.2
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 6.7e-26 122.9 213 36.2
Nitab4.5_0000688g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 4.5e-22 110.2 220 32.7
RcHm_v2.0_Chr3g0493761 Rosa chinensis HOM05D005467 ORTHO05D006523 1.1e-20 105.5 122 52.5
Phvul.008G137000 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 1.5e-20 105.1 55 83.6
Lsat_1_v5_gn_6_22900 Lactuca sativa HOM05D005467 ORTHO05D006523 1.9e-20 104.8 102 57.8
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.5e-17 95.1 304 27.0
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 9.7e-17 92.4 90 48.9
PGSC0003DMG400038827 Solanum tuberosum HOM05D005467 ORTHO05D006523 4.1e-15 87.0 104 36.5
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.6e-14 84.3 87 47.1
MD05G1282800 Malus domestica HOM05D005467 ORTHO05D006523 7.5e-09 66.2 170 30.6
SEGI_39271 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 1.7e-08 65.1 41 73.2
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 4.1e-07 60.5 41 65.9
CDE07G1559 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 4.5e-06 57.0 49 51.0


User provided reference genes

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