Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 1.5e-151 539.7 298 100.0
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 3.2e-130 468.8 298 75.5
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 7.1e-130 467.6 298 76.5
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 3.1e-125 452.2 298 74.5
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 6.8e-125 451.1 298 72.8
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 1.1e-122 443.7 298 72.5
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 1.4e-122 443.4 298 73.2
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 5.4e-122 441.4 298 72.1
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 7.1e-122 441.0 297 71.0
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 3.5e-121 438.7 298 71.5
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 6.0e-121 438.0 297 70.4
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 6.0e-121 438.0 298 70.8
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 1.3e-120 436.8 298 71.1
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 1.7e-120 436.4 297 71.7
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 5.1e-120 434.9 298 72.1
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 6.6e-120 434.5 298 70.5
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 8.6e-120 434.1 298 70.1
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 1.1e-119 433.7 297 72.7
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 1.5e-119 433.3 298 78.2
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 1.5e-119 433.3 296 70.6
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 1.9e-119 433.0 298 70.8
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 2.5e-119 432.6 294 70.7
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 2.5e-119 432.6 298 70.5
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 3.3e-119 432.2 295 71.2
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 4.3e-119 431.8 296 69.9
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 7.3e-119 431.0 296 69.6
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 7.3e-119 431.0 294 71.1
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 9.6e-119 430.6 298 70.8
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 9.6e-119 430.6 298 70.5
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 1.2e-118 430.3 295 70.2
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 1.2e-118 430.3 298 70.1
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 2.1e-118 429.5 298 76.8
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 2.1e-118 429.5 298 76.8
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 2.8e-118 429.1 297 69.4
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 2.8e-118 429.1 296 69.9
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 3.6e-118 428.7 296 69.9
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.8e-117 426.4 295 69.2
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 1.8e-117 426.4 297 69.4
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 1.8e-117 426.4 297 69.4
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 2.4e-117 426.0 298 70.5
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 2.4e-117 426.0 294 69.4
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 2.4e-117 426.0 302 69.2
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 3.1e-117 425.6 294 70.1
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 5.2e-117 424.9 298 69.5
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 5.2e-117 424.9 292 70.2
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 2.0e-116 422.9 294 69.0
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 2.0e-116 422.9 298 68.8
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 3.4e-116 422.2 298 74.8
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 3.4e-116 422.2 297 69.4
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 3.4e-116 422.2 300 70.3
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 4.4e-116 421.8 298 69.1
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 5.8e-116 421.4 298 69.1
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 9.9e-116 420.6 298 68.8
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 2.2e-115 419.5 284 72.5
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 6.4e-115 417.9 298 69.1
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 1.9e-114 416.4 294 68.7
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 1.9e-114 416.4 285 70.2
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 3.2e-114 415.6 298 69.5
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 1.6e-113 413.3 295 68.8
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 2.1e-113 412.9 293 69.6
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 2.1e-113 412.9 297 69.0
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 2.7e-113 412.5 297 68.4
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 1.7e-112 409.8 284 74.6
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 5.1e-112 408.3 298 67.4
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 1.5e-111 406.8 298 65.8
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 2.5e-111 406.0 296 65.2
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 2.5e-111 406.0 290 68.6
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 9.6e-111 404.1 298 66.4
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 1.3e-110 403.7 298 66.8
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 1.6e-110 403.3 325 61.8
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 2.1e-110 402.9 295 66.8
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 2.8e-110 402.5 296 62.8
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 4.8e-110 401.7 298 64.4
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 1.4e-109 400.2 295 66.8
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 4.0e-109 398.7 298 66.4
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 6.9e-109 397.9 328 61.3
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 1.2e-108 397.1 296 63.2
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 2.0e-108 396.4 295 63.4
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 2.6e-108 396.0 303 63.0
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 2.6e-108 396.0 296 63.2
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 4.4e-108 395.2 295 62.7
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 4.4e-108 395.2 295 62.7
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 5.8e-108 394.8 264 72.0
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 1.7e-107 393.3 295 62.0
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 1.7e-107 393.3 296 62.2
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 2.2e-107 392.9 295 62.0
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 2.2e-107 392.9 295 62.0
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 6.4e-107 391.3 295 62.7
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 5.4e-106 388.3 295 61.7
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 2.1e-105 386.3 285 66.3
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 6.0e-105 384.8 283 66.8
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.3e-102 377.1 277 67.5
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 1.3e-102 377.1 296 61.5
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 8.1e-102 374.4 284 64.4
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 5.3e-101 371.7 265 66.8
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.4e-98 363.6 423 48.7
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.3e-96 357.1 291 59.1
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 2.3e-96 356.3 291 59.1
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 4.3e-95 352.1 251 68.9
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 6.2e-94 348.2 188 84.6
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 7.6e-92 341.3 265 59.6
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 1.3e-91 340.5 298 59.4
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 1.7e-91 340.1 265 58.9
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 3.8e-91 339.0 283 60.1
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 5.5e-90 335.1 416 46.6
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 9.6e-87 324.3 274 56.2
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 2.0e-84 316.6 263 56.3
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 9.7e-79 297.7 301 49.2
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 9.7e-79 297.7 166 79.5
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 1.3e-78 297.4 297 47.8
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 2.8e-78 296.2 202 67.8
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 6.3e-78 295.0 166 78.9
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 1.8e-77 293.5 175 75.4
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 3.4e-76 289.3 323 48.9
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 1.3e-75 287.3 144 88.9
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 2.9e-75 286.2 295 48.8
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 3.0e-72 276.2 179 65.9
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 1.1e-69 267.7 281 48.8
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 6.7e-64 248.4 156 74.4
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 3.3e-63 246.1 295 42.0
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 5.7e-55 218.8 147 62.6
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 8.2e-54 214.9 312 39.7
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 1.8e-48 197.2 263 41.4
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 2.0e-47 193.7 308 38.3
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 2.0e-47 193.7 156 63.5
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.7e-43 180.6 149 61.7
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 6.1e-41 172.2 262 39.3
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 2.0e-39 167.2 157 58.6
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 1.3e-38 164.5 196 39.8
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 3.0e-32 143.3 77 83.1
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 4.0e-32 142.9 110 61.8
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 1.3e-27 127.9 71 77.5
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 5.0e-27 125.9 72 73.6
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 5.0e-27 125.9 72 73.6
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.6e-17 94.4 60 71.7
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 2.1e-17 94.0 96 53.1
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.1e-17 94.0 61 70.5
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 2.8e-17 93.6 65 66.2
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 6.2e-17 92.4 62 69.4
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 6.8e-16 89.0 85 54.1
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 6.8e-16 89.0 60 70.0
MCO11G144 Micromonas commoda HOM05D019566 ORTHO05D017343 1.2e-07 61.6 126 31.7
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 2.2e-06 57.4 169 25.4
SMO119G0520 Selaginella moellendorffii HOM05D019566 ORTHO05D017343 8.4e-06 55.5 102 32.4


User provided reference genes

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