Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 2.8e-140 501.9 249 100.0
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.4e-131 473.0 255 93.7
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 7.5e-109 397.5 248 77.0
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 3.1e-107 392.1 248 76.6
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 5.4e-107 391.3 248 75.4
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 2.6e-101 372.5 248 72.6
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 1.4e-99 366.7 250 70.8
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 7.0e-99 364.4 248 68.5
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 1.6e-98 363.2 248 69.8
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 2.0e-98 362.8 250 70.4
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 2.0e-98 362.8 248 70.6
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 3.5e-98 362.1 248 70.6
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 4.6e-98 361.7 249 68.7
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 5.9e-98 361.3 248 71.8
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.3e-97 360.1 253 70.0
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 1.3e-97 360.1 250 71.2
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 1.7e-97 359.8 248 69.8
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 2.3e-97 359.4 248 70.2
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 1.1e-96 357.1 249 68.7
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 3.3e-96 355.5 250 70.0
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 3.3e-96 355.5 249 70.3
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 7.3e-96 354.4 250 71.2
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 7.3e-96 354.4 250 71.2
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 1.6e-95 353.2 251 70.1
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 2.1e-95 352.8 248 69.4
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 4.7e-95 351.7 248 69.0
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 6.2e-95 351.3 248 69.0
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 6.2e-95 351.3 251 70.9
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 8.0e-95 350.9 248 67.3
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 8.0e-95 350.9 248 69.0
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 1.4e-94 350.1 248 67.7
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.4e-94 350.1 249 67.9
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 2.3e-94 349.4 250 70.4
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 3.1e-94 349.0 250 70.4
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 4.0e-94 348.6 250 70.0
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 5.2e-94 348.2 248 67.3
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 6.8e-94 347.8 250 70.0
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 8.9e-94 347.4 248 67.7
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 8.9e-94 347.4 250 68.0
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 8.9e-94 347.4 248 66.5
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 2.0e-93 346.3 250 68.8
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 3.4e-93 345.5 250 69.2
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 5.8e-93 344.7 250 69.2
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 9.8e-93 344.0 250 65.2
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.2e-92 342.8 250 68.8
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 2.9e-92 342.4 251 69.3
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.9e-92 342.4 248 67.7
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 4.9e-92 341.7 250 69.2
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 4.9e-92 341.7 250 69.2
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 4.9e-92 341.7 250 67.6
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 8.3e-92 340.9 251 67.3
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 8.3e-92 340.9 248 67.3
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 1.1e-91 340.5 251 68.5
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 1.4e-91 340.1 250 70.0
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 3.2e-91 339.0 252 65.9
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 4.1e-91 338.6 248 66.5
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 4.1e-91 338.6 245 64.9
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 4.1e-91 338.6 246 66.7
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 7.0e-91 337.8 250 66.4
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 7.0e-91 337.8 250 66.4
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 9.2e-91 337.4 250 64.4
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 1.2e-90 337.0 248 66.1
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.2e-90 337.0 248 66.5
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.7e-90 335.9 244 67.6
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.7e-90 335.9 244 67.6
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 3.5e-90 335.5 240 69.6
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 3.5e-90 335.5 248 66.1
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 3.5e-90 335.5 248 66.1
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 3.5e-90 335.5 248 66.1
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 7.8e-90 334.3 248 65.7
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.3e-89 333.6 252 65.5
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.3e-89 333.6 244 67.2
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 2.3e-89 332.8 261 65.1
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 2.3e-89 332.8 250 65.2
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 3.0e-89 332.4 250 64.0
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.9e-89 332.0 252 65.5
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 1.1e-88 330.5 245 64.5
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 1.1e-88 330.5 252 65.9
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 1.1e-88 330.5 250 64.4
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 1.5e-88 330.1 249 64.7
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 1.9e-88 329.7 250 65.6
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 3.3e-88 328.9 250 64.8
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 4.3e-88 328.6 243 67.1
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 4.3e-88 328.6 250 66.4
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 5.6e-88 328.2 250 65.6
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 5.6e-88 328.2 245 63.3
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 7.3e-88 327.8 248 64.9
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 7.3e-88 327.8 250 66.4
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 7.3e-88 327.8 248 64.5
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 1.6e-87 326.6 250 65.6
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 2.1e-87 326.2 250 64.0
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 3.6e-87 325.5 245 63.3
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 8.1e-87 324.3 251 64.5
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 1.4e-86 323.6 248 63.7
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 1.4e-86 323.6 249 63.5
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 1.8e-86 323.2 252 63.9
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 1.8e-86 323.2 252 63.9
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 2.3e-86 322.8 250 62.8
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 2.3e-86 322.8 246 65.4
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 3.1e-86 322.4 250 64.0
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 4.0e-86 322.0 248 62.5
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.2e-85 320.5 241 65.6
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 1.2e-85 320.5 254 62.6
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 5.8e-85 318.2 245 65.7
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 5.8e-85 318.2 245 65.7
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 5.8e-85 318.2 290 56.6
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 1.7e-84 316.6 239 65.3
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 2.9e-84 315.8 245 64.9
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 3.7e-84 315.5 249 63.5
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 6.4e-84 314.7 274 59.9
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 6.4e-84 314.7 274 59.9
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 1.4e-83 313.5 253 62.5
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 3.2e-83 312.4 292 58.2
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.3e-81 307.0 243 63.0
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 3.9e-81 305.4 226 66.8
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.1e-80 303.9 239 62.3
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 3.3e-80 302.4 240 63.3
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 5.6e-80 301.6 237 63.3
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 7.3e-80 301.2 239 61.9
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 2.1e-79 299.7 251 59.8
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 1.5e-77 293.5 248 61.7
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 3.4e-77 292.4 245 60.4
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.7e-76 290.0 248 60.1
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 2.9e-76 289.3 251 56.6
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 3.2e-75 285.8 182 77.5
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 1.9e-72 276.6 201 68.2
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 1.1e-70 270.8 172 76.7
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 2.9e-68 262.7 248 57.3
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 6.4e-68 261.5 242 56.6
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 3.5e-66 255.8 132 96.2
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 3.5e-66 255.8 132 96.2
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 4.3e-64 248.8 175 69.1
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 9.3e-59 231.1 188 63.3
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 7.9e-58 228.0 131 82.4
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 3.0e-57 226.1 234 47.9
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.1e-57 225.3 184 63.6
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 2.8e-47 193.0 181 55.2
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 4.2e-43 179.1 168 55.4
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 5.5e-43 178.7 199 52.8
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 1.2e-42 177.6 110 79.1
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 1.5e-37 160.6 187 50.8
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 1.5e-37 160.6 187 50.8
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 5.0e-36 155.6 86 83.7
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 3.0e-33 146.4 174 40.8
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 3.2e-27 126.3 139 47.5
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 3.6e-26 122.9 62 90.3
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.5e-21 107.5 174 36.2
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 2.0e-21 107.1 99 55.6
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 2.0e-21 107.1 99 55.6
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 7.7e-21 105.1 69 78.3
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 5.0e-20 102.4 105 57.1
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 8.5e-20 101.7 169 37.3
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 9.4e-19 98.2 73 65.8
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 9.7e-16 88.2 75 54.7
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 2.0e-13 80.5 92 52.2
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 8.0e-10 68.6 46 63.0
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 2.0e-08 63.9 51 56.9
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 2.6e-08 63.5 203 32.0
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 1.3e-07 61.2 68 51.5
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 2.8e-07 60.1 54 57.4
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.1e-06 58.2 124 31.5
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 1.1e-06 58.2 37 78.4
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 1.1e-06 58.2 203 25.6
BcaC05g26219 Brassica carinata HOM05D004292 ORTHO05D005206 5.3e-06 55.8 34 70.6
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 9.1e-06 55.1 65 44.6


User provided reference genes

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