Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 7.4e-220 766.9 392 100.0
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.1e-175 620.2 415 78.8
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 1.6e-158 563.1 398 73.1
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 4.7e-158 561.6 416 71.9
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 1.3e-155 553.5 420 68.6
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 8.3e-155 550.8 411 69.8
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 1.1e-151 540.4 407 70.5
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 4.3e-151 538.5 411 69.3
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 5.6e-151 538.1 426 68.5
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 7.3e-151 537.7 415 68.4
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 2.8e-150 535.8 401 70.3
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 3.1e-149 532.3 395 69.9
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 2.0e-148 529.6 398 69.8
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 2.6e-148 529.3 355 78.9
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 7.6e-148 527.7 455 62.2
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 9.9e-148 527.3 371 75.2
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 2.2e-147 526.2 398 68.3
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 6.4e-147 524.6 398 69.1
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 1.9e-146 523.1 420 68.3
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.4e-146 522.7 395 68.1
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 5.4e-146 521.5 398 67.8
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 7.1e-146 521.2 422 66.8
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 9.2e-146 520.8 398 68.6
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.8e-145 517.7 398 68.1
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 8.6e-144 514.2 415 66.0
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 1.5e-143 513.5 408 66.9
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 8.9e-141 504.2 414 65.5
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 4.9e-139 498.4 425 65.6
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.9e-138 496.5 420 64.0
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 3.2e-138 495.7 413 63.2
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 7.1e-138 494.6 404 67.1
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.2e-137 493.8 420 64.0
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 1.6e-137 493.4 435 63.2
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 3.0e-136 489.2 420 63.6
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 2.5e-135 486.1 399 64.4
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 3.3e-135 485.7 397 64.5
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 7.3e-135 484.6 466 56.4
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 2.1e-134 483.0 417 64.3
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 3.6e-134 482.3 419 63.0
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 8.1e-134 481.1 410 65.4
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 1.1e-133 480.7 394 64.2
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 9.0e-133 477.6 406 65.0
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 2.0e-132 476.5 395 64.6
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 3.4e-132 475.7 414 63.0
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 7.6e-132 474.6 397 61.7
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 9.9e-132 474.2 404 63.6
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 2.9e-131 472.6 420 62.4
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 6.4e-131 471.5 397 62.5
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 6.4e-131 471.5 405 62.0
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 1.1e-130 470.7 404 63.1
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 1.9e-130 469.9 415 60.7
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 1.0e-128 464.2 412 62.4
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.8e-128 463.4 339 71.7
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 2.3e-128 463.0 422 60.9
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 5.1e-128 461.8 394 61.7
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 1.9e-127 459.9 427 59.3
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 1.3e-126 457.2 427 59.5
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 8.1e-126 454.5 364 65.7
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 4.0e-125 452.2 396 60.4
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.2e-124 450.7 327 72.5
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 3.4e-124 449.1 398 62.1
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 3.2e-122 442.6 410 58.5
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 3.2e-122 442.6 397 62.5
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 7.1e-122 441.4 430 56.3
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 2.1e-121 439.9 384 60.7
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 1.8e-120 436.8 402 59.2
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 3.0e-120 436.0 427 56.2
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 1.1e-119 434.1 355 65.4
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 1.1e-119 434.1 414 58.7
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 9.6e-119 431.0 442 55.0
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 9.6e-119 431.0 408 58.6
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 2.1e-118 429.9 440 58.0
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 2.8e-118 429.5 400 58.5
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.4e-117 427.2 325 69.5
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 2.4e-117 426.4 407 58.5
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 2.6e-116 422.9 400 59.2
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 4.5e-116 422.2 396 58.6
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 4.5e-116 422.2 410 57.6
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 4.5e-116 422.2 398 58.5
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 7.6e-116 421.4 396 58.3
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 1.0e-115 421.0 410 57.6
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 1.0e-115 421.0 398 58.3
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.0e-115 421.0 402 57.7
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 2.2e-115 419.9 410 57.6
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 8.4e-115 417.9 370 62.2
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 3.2e-114 416.0 410 56.8
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 3.2e-114 416.0 413 57.1
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 6.0e-113 411.8 346 65.0
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.9e-113 411.4 282 75.2
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 7.9e-113 411.4 307 72.0
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 1.8e-112 410.2 410 56.6
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 3.3e-111 406.0 389 58.6
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 6.3e-110 401.7 282 73.8
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 7.6e-108 394.8 397 57.2
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 5.0e-107 392.1 413 55.0
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 3.2e-106 389.4 406 56.4
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 4.2e-106 389.0 331 63.4
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 7.2e-106 388.3 347 62.0
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 9.3e-106 387.9 407 56.0
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 2.1e-105 386.7 318 65.1
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 4.8e-102 375.6 304 65.5
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 1.5e-100 370.5 451 50.3
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 3.4e-100 369.4 338 60.9
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 4.2e-98 362.5 278 67.3
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 9.4e-98 361.3 401 52.9
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 1.1e-90 337.8 332 57.2
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 2.0e-84 317.0 323 54.8
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.9e-83 313.2 370 49.7
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 2.9e-83 313.2 326 54.9
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 3.0e-72 276.6 388 44.1
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 5.4e-61 239.2 212 59.4
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 4.3e-58 229.6 128 89.8
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 1.2e-55 221.5 303 45.9
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 2.0e-55 220.7 419 36.3
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 4.4e-55 219.5 149 77.9
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 1.2e-52 211.5 412 35.7
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 1.5e-50 204.5 124 81.5
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 3.1e-40 170.2 423 30.5
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 1.4e-32 144.8 109 70.6
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 8.4e-30 135.6 100 76.0
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 1.7e-27 127.9 98 68.4
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 9.6e-26 122.1 93 73.1
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 5.8e-23 112.8 105 58.1
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 7.6e-23 112.5 89 67.4
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 3.5e-20 103.6 175 41.7
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 5.8e-15 86.3 91 44.0
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.1e-10 72.0 81 48.1
Gohir.A11G262000 Gossypium hirsutum HOM05D005892 ORTHO05D007364 9.9e-07 58.9 45 60.0
Peaxi162Scf00684g00584 Petunia axillaris HOM05D005892 ORTHO05D007364 6.4e-06 56.2 99 45.5


User provided reference genes

Program Settings