Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0078600 Rhododendron simsii HOM05D006757 ORTHO05D004651 0.0e+00 1576.6 873 100.0
vmacro10765 Vaccinium macrocarpon HOM05D006757 ORTHO05D004651 4.3e-236 822.0 693 77.5
Actinidia12418 Actinidia chinensis HOM05D006757 ORTHO05D004651 1.4e-226 790.4 872 61.0
CSS0018736 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 1.1e-207 727.6 879 58.1
Dinv02708 Davidia involucrata HOM05D006757 ORTHO05D004651 4.5e-185 652.5 871 55.0
GSVIVG01010290001 Vitis vinifera HOM05D006757 ORTHO05D004651 6.8e-173 612.1 637 62.8
TAR622G0072 Trochodendron aralioides HOM05D006757 ORTHO05D004651 4.9e-163 579.3 877 50.7
Duzib248G0842 Durio zibethinus HOM05D006757 ORTHO05D004651 5.4e-162 575.9 857 50.9
Gohir.D01G136700 Gossypium hirsutum HOM05D006757 ORTHO05D004651 7.0e-162 575.5 873 50.3
Gorai.002G169200 Gossypium raimondii HOM05D006757 ORTHO05D004651 1.6e-161 574.3 873 50.3
Gohir.A01G144000 Gossypium hirsutum HOM05D006757 ORTHO05D004651 3.0e-160 570.1 873 50.1
Lj6C727G2 Lonicera japonica HOM05D006757 ORTHO05D004651 5.0e-160 569.3 881 49.0
CiPaw.05G164400 Carya illinoinensis HOM05D006757 ORTHO05D004651 1.1e-159 568.2 826 51.8
COL.COLO4_27539 Corchorus olitorius HOM05D006757 ORTHO05D004651 1.8e-157 560.8 815 51.9
Thecc.02G299300 Theobroma cacao HOM05D006757 ORTHO05D004651 8.9e-157 558.5 822 51.0
Prupe.1G340900 Prunus persica HOM05D006757 ORTHO05D004651 4.6e-153 546.2 795 50.9
TWI53G1444 Tripterygium wilfordii HOM05D006757 ORTHO05D004651 9.5e-151 538.5 877 48.3
Nn4g24781 Nelumbo nucifera HOM05D006757 ORTHO05D004651 3.7e-147 526.6 834 47.7
MD16G1009700 Malus domestica HOM05D006757 ORTHO05D004651 3.2e-146 523.5 790 50.3
RcHm_v2.0_Chr4g0445651 Rosa chinensis HOM05D006757 ORTHO05D004651 7.1e-146 522.3 791 50.1
Sabra10G0071900 Salix brachista HOM05D006757 ORTHO05D004651 6.6e-144 515.8 925 37.5
FAN17G2536 Fragaria x ananassa HOM05D006757 ORTHO05D004651 4.0e-141 506.5 797 49.9
FvH4_4g36030 Fragaria vesca HOM05D006757 ORTHO05D004651 1.2e-140 505.0 654 56.3
QL03p041041 Quercus lobata HOM05D006757 ORTHO05D004651 2.6e-140 503.8 908 46.6
PGR142G0977 Punica granatum HOM05D006757 ORTHO05D004651 7.6e-140 502.3 805 47.0
Manes.17G092000 Manihot esculenta HOM05D006757 ORTHO05D004651 1.1e-138 498.4 656 54.6
Solyc01g007880.4 Solanum lycopersicum HOM05D006757 ORTHO05D004651 1.9e-138 497.7 803 47.6
MELO3C005216.2 Cucumis melo HOM05D006757 ORTHO05D004651 4.2e-138 496.5 879 45.6
Sopen01g003410 Solanum pennellii HOM05D006757 ORTHO05D004651 4.6e-137 493.0 803 47.2
Aqoxy3G04184 Aquilegia oxysepala HOM05D006757 ORTHO05D004651 1.7e-136 491.1 874 45.4
Ciclev10006553m.g Citrus clementina HOM05D006757 ORTHO05D004651 3.0e-136 490.3 636 55.8
CsaV3_5G017370 Cucumis sativus L. HOM05D006757 ORTHO05D004651 1.3e-134 485.0 823 47.1
FAN12G3615 Fragaria x ananassa HOM05D006757 ORTHO05D004651 3.6e-134 483.4 858 46.5
DCAR_030323 Daucus carota HOM05D006757 ORTHO05D004651 4.8e-134 483.0 646 47.4
ClCG01G006950 Citrullus lanatus HOM05D006757 ORTHO05D004651 1.4e-133 481.5 862 46.1
ECA233G5323 Erigeron canadensis HOM05D006757 ORTHO05D004651 2.4e-133 480.7 795 49.3
FAN22G1875 Fragaria x ananassa HOM05D006757 ORTHO05D004651 3.4e-132 476.9 866 48.0
Ca_11197_v3 Cicer arietinum L. HOM05D006757 ORTHO05D004651 1.1e-130 471.9 728 41.3
CANSAT78G0289 Cannabis sativa HOM05D006757 ORTHO05D004651 1.6e-129 468.0 821 45.9
Eucgr.G02041 Eucalyptus grandis HOM05D006757 ORTHO05D004651 2.7e-129 467.2 649 54.1
Phvul.007G020500 Phaseolus vulgaris HOM05D006757 ORTHO05D004651 6.6e-128 462.6 836 45.5
HanXRQChr12g0365871 Helianthus annuus HOM05D006757 ORTHO05D004651 1.1e-127 461.8 866 46.5
Lalb_Chr21g0306871 Lupinus albus HOM05D006757 ORTHO05D004651 1.1e-127 461.8 857 44.5
Migut.E00572 Erythranthe guttata HOM05D006757 ORTHO05D004651 1.9e-127 461.1 803 46.3
Lj5g0011768 Lotus japonicus HOM05D006757 ORTHO05D004651 3.6e-126 456.8 831 46.0
VMungo0720G1053 Vigna mungo HOM05D006757 ORTHO05D004651 3.6e-126 456.8 842 45.6
Nitab4.5_0004543g0020 Nicotiana tabacum HOM05D006757 ORTHO05D004651 4.8e-126 456.4 643 50.9
MSTRG.2098 Avicennia marina HOM05D006757 ORTHO05D004651 1.8e-125 454.5 797 45.8
EL10Ac6g15397 Beta vulgaris HOM05D006757 ORTHO05D004651 6.9e-125 452.6 842 44.5
Glyma.10G280500 Glycine max HOM05D006757 ORTHO05D004651 6.9e-125 452.6 884 45.4
arahy.Tifrunner.gnm1.ann1.18R96V Arachis hypogaea HOM05D006757 ORTHO05D004651 1.2e-124 451.8 871 44.5
arahy.Tifrunner.gnm1.ann1.CLVE3A Arachis hypogaea HOM05D006757 ORTHO05D004651 2.0e-124 451.1 871 44.4
AUR62017786 Chenopodium quinoa HOM05D006757 ORTHO05D004651 9.9e-124 448.7 789 47.1
Atru.chr11.1028 Acer truncatum HOM05D006757 ORTHO05D004651 4.9e-123 446.4 511 48.3
TPR.G2437 Trifolium pratense HOM05D006757 ORTHO05D004651 1.9e-122 444.5 730 40.8
Psat6g231440 Pisum sativum HOM05D006757 ORTHO05D004651 6.7e-120 436.0 840 44.8
Medtr1g112280 Medicago truncatula HOM05D006757 ORTHO05D004651 2.5e-119 434.1 837 44.3
FAN07G0462 Fragaria x ananassa HOM05D006757 ORTHO05D004651 4.8e-118 429.9 858 42.7
AUR62003477 Chenopodium quinoa HOM05D006757 ORTHO05D004651 1.4e-117 428.3 638 51.7
Lsat_1_v5_gn_8_33901 Lactuca sativa HOM05D006757 ORTHO05D004651 2.4e-117 427.6 859 44.0
Cc11_g03340 Coffea canephora HOM05D006757 ORTHO05D004651 4.0e-117 426.8 680 48.8
Potri.010G099300 Populus trichocarpa HOM05D006757 ORTHO05D004651 2.0e-116 424.5 547 57.4
SGA_v2.0_scaffold470G52072 Striga asiatica HOM05D006757 ORTHO05D004651 1.2e-113 415.2 819 44.2
PSO063G3495 Papaver somniferum HOM05D006757 ORTHO05D004651 4.6e-113 413.3 767 37.2
AL2G34890 Arabidopsis lyrata HOM05D006757 ORTHO05D004651 2.8e-110 404.1 817 42.5
Sp5g30140 Schrenkiella parvula HOM05D006757 ORTHO05D004651 4.1e-109 400.2 831 41.8
AT1G75010 Arabidopsis thaliana HOM05D006757 ORTHO05D004651 5.3e-109 399.8 838 41.9
BcaC08g46956 Brassica carinata HOM05D006757 ORTHO05D004651 5.3e-109 399.8 819 42.6
Sed0027541 Sechium edule HOM05D006757 ORTHO05D004651 2.0e-108 397.9 577 53.6
Thhalv10018185m.g Eutrema salsugineum HOM05D006757 ORTHO05D004651 1.9e-106 391.3 833 42.1
A07p40640 Brassica napus HOM05D006757 ORTHO05D004651 7.2e-106 389.4 793 43.3
BraA07t31608Z Brassica rapa HOM05D006757 ORTHO05D004651 7.2e-106 389.4 799 43.2
ATR0807G004 Amborella trichopoda HOM05D006757 ORTHO05D004651 5.1e-104 383.3 732 34.8
BcaC08g46933 Brassica carinata HOM05D006757 ORTHO05D004651 1.5e-103 381.7 794 43.1
BolC6t39938H Brassica oleracea HOM05D006757 ORTHO05D004651 6.3e-102 376.3 794 42.9
Peaxi162Scf00097g00232 Petunia axillaris HOM05D006757 ORTHO05D004651 4.1e-101 373.6 640 48.1
CARHR068320 Cardamine hirsuta HOM05D006757 ORTHO05D004651 2.0e-100 371.3 640 47.5
Cpa.g.sc2.85 Carica papaya HOM05D006757 ORTHO05D004651 2.6e-100 370.9 483 45.1
Carub.0002s2179 Capsella rubella HOM05D006757 ORTHO05D004651 3.8e-99 367.1 637 47.1
THA.LOC104809054 Tarenaya hassleriana HOM05D006757 ORTHO05D004651 2.5e-98 364.4 821 42.3
C06p49010 Brassica napus HOM05D006757 ORTHO05D004651 3.2e-98 364.0 821 41.3
Aa31LG4G5230 Aethionema arabicum HOM05D006757 ORTHO05D004651 7.2e-98 362.8 808 40.7
CAN.G282.84 Capsicum annuum HOM05D006757 ORTHO05D004651 1.8e-96 358.2 549 51.2
Sc17g0005480 Simmondsia chinensis HOM05D006757 ORTHO05D004651 6.9e-93 346.3 589 48.6
SalBow2G2705 Salvia bowleyana HOM05D006757 ORTHO05D004651 2.3e-88 331.3 578 46.4
Hma1.2p1_0933F.1_g238410 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 4.7e-81 307.0 458 57.4
Os09g0555600 Oryza sativa ssp. japonica HOM05D006757 ORTHO05D004651 4.2e-74 283.9 687 32.5
Hma1.2p1_0933F.1_g238400 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 9.4e-74 282.7 344 47.4
HPP92_025367 Vanilla planifolia HOM05D006757 ORTHO05D004651 3.5e-68 264.2 799 36.9
Nitab4.5_0000944g0040 Nicotiana tabacum HOM05D006757 ORTHO05D004651 5.0e-67 260.4 215 59.5
BcaNung05827 Brassica carinata HOM05D006757 ORTHO05D004651 2.2e-62 245.0 621 34.6
Haze_10724 Corylus avellana HOM05D006757 ORTHO05D004651 6.6e-59 233.4 434 50.9
unitig_699.g19471 Utricularia gibba HOM05D006757 ORTHO05D004651 6.1e-57 226.9 637 38.1
CSS0016054 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 2.0e-55 221.9 237 55.7
Hund12802 Selenicereus undatus HOM05D006757 ORTHO05D004651 5.7e-55 220.3 411 52.6
CSS0036943 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 3.2e-53 214.5 176 64.8
BolC2t09256H Brassica oleracea HOM05D006757 ORTHO05D004651 1.5e-47 195.7 504 29.8
Actinidia37474 Actinidia chinensis HOM05D006757 ORTHO05D004651 1.4e-45 189.1 202 54.5
vmacro10766 Vaccinium macrocarpon HOM05D006757 ORTHO05D004651 1.6e-41 175.6 154 62.3
Oeu001141.1 Olea europaea HOM05D006757 ORTHO05D004651 1.7e-38 165.6 355 35.5
BcaC03g15537 Brassica carinata HOM05D006757 ORTHO05D004651 7.8e-36 156.8 463 28.7
Mapoly0058s0047 Marchantia polymorpha HOM05D006757 ORTHO05D004651 1.2e-33 149.4 556 27.3
COL.COLO4_13886 Corchorus olitorius HOM05D003428 ORTHO05D004131 8.6e-27 126.7 302 32.8
SEGI_38740 Sequoiadendron giganteum HOM05D006757 ORTHO05D004651 1.5e-23 115.9 183 41.0
SalBow2G2121 Salvia bowleyana HOM05D006757 ORTHO05D004651 4.8e-17 94.4 311 30.9
CDE04G1248 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 3.1e-16 91.7 76 60.5
Zm00001eb320640 Zea mays HOM05D006757 ORTHO05D004651 1.5e-15 89.4 164 37.8
Glyma.20G109150 Glycine max HOM05D006757 ORTHO05D004651 1.7e-14 85.9 81 51.9
CSS0046499 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 1.6e-12 79.3 47 74.5
Cc11_g03350 Coffea canephora HOM05D006757 ORTHO05D004651 3.9e-11 74.7 113 43.4
Haze_10728 Corylus avellana HOM05D063416 ORTHO05D034208 1.2e-07 63.2 106 45.3
CDE04G0645 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 3.4e-07 61.6 144 30.6
Lalb_Chr20g0111751 Lupinus albus HOM05D001616 ORTHO05D003701 3.4e-07 61.6 283 23.3
Hma1.2p1_0933F.1_g238390 Hydrangea macrophylla HOM05D006757 ORTHO05D034208 4.5e-07 61.2 119 42.9
Medtr1g060010 Medicago truncatula HOM05D001616 ORTHO05D003701 5.8e-07 60.8 290 22.4
AL5G33520 Arabidopsis lyrata HOM05D001616 ORTHO05D003701 9.9e-07 60.1 255 24.3
DCAR_012192 Daucus carota HOM05D001616 ORTHO05D003701 9.9e-07 60.1 214 24.3
Manes.09G055800 Manihot esculenta HOM05D001616 ORTHO05D003701 1.3e-06 59.7 254 23.6
Eucgr.K02046 Eucalyptus grandis HOM05D001616 ORTHO05D003701 1.7e-06 59.3 265 24.5
Peaxi162Scf00097g02317 Petunia axillaris HOM05D006757 ORTHO05D004651 1.7e-06 59.3 35 77.1
Actinidia24214 Actinidia chinensis HOM05D001616 ORTHO05D003701 2.2e-06 58.9 213 24.4
CsaV3_6G040670 Cucumis sativus L. HOM05D001616 ORTHO05D003701 2.2e-06 58.9 213 24.4
Dinv31681 Davidia involucrata HOM05D001616 ORTHO05D003701 2.2e-06 58.9 291 24.4
Lj1g0010332 Lotus japonicus HOM05D001616 ORTHO05D003701 2.2e-06 58.9 254 23.6
PGR004G2028 Punica granatum HOM05D001616 ORTHO05D003701 2.2e-06 58.9 254 23.6
TPR.G19551 Trifolium pratense HOM05D001616 ORTHO05D003701 2.2e-06 58.9 265 23.8
arahy.Tifrunner.gnm1.ann1.7QY2UT Arachis hypogaea HOM05D001616 ORTHO05D003701 2.9e-06 58.5 254 23.6
Ca_09000_v3 Cicer arietinum L. HOM05D001616 ORTHO05D003701 2.9e-06 58.5 254 23.6
Ciclev10011609m.g Citrus clementina HOM05D001616 ORTHO05D003701 2.9e-06 58.5 229 24.5
Psat3g033560 Pisum sativum HOM05D001616 ORTHO05D003701 2.9e-06 58.5 254 23.6
Hund01947 Selenicereus undatus HOM05D001616 ORTHO05D004707 2.9e-06 58.5 174 25.9
Glyma.03G195200 Glycine max HOM05D001616 ORTHO05D003701 3.8e-06 58.2 254 23.6
Medtr7g104500 Medicago truncatula HOM05D001616 ORTHO05D003701 3.8e-06 58.2 254 23.6
Potri.006G083100 Populus trichocarpa HOM05D001616 ORTHO05D003701 3.8e-06 58.2 254 23.2
PRCOL_00006328 Prasinoderma coloniale HOM05D001616 ORTHO05D003701 3.8e-06 58.2 222 24.3
QL07p038824 Quercus lobata HOM05D001616 ORTHO05D003701 3.8e-06 58.2 265 23.8
QL07p039084 Quercus lobata HOM05D001616 ORTHO05D003701 3.8e-06 58.2 265 23.8
SMO271G0107 Selaginella moellendorffii HOM05D001616 ORTHO05D004707 3.8e-06 58.2 178 25.3
VMungo1383G2060 Vigna mungo HOM05D001616 ORTHO05D003701 3.8e-06 58.2 254 23.6
GSVIVG01033836001 Vitis vinifera HOM05D001616 ORTHO05D003701 3.8e-06 58.2 291 23.7
Actinidia07929 Actinidia chinensis HOM05D001616 ORTHO05D003701 4.9e-06 57.8 223 24.7
Aqoxy4G02783 Aquilegia oxysepala HOM05D001616 ORTHO05D003701 4.9e-06 57.8 254 23.6
arahy.Tifrunner.gnm1.ann1.AND8NH Arachis hypogaea HOM05D001616 ORTHO05D003701 4.9e-06 57.8 265 24.2
COL.COLO4_19883 Corchorus olitorius HOM05D001616 ORTHO05D003701 4.9e-06 57.8 232 23.3
HanXRQChr13g0399091 Helianthus annuus HOM05D001616 ORTHO05D003701 4.9e-06 57.8 254 24.0
TAR623G0486 Trochodendron aralioides HOM05D001616 ORTHO05D003701 4.9e-06 57.8 254 23.2
Atru.chr8.1549 Acer truncatum HOM05D001616 ORTHO05D003701 6.4e-06 57.4 229 24.0
Dinv21213 Davidia involucrata HOM05D001616 ORTHO05D003701 6.4e-06 57.4 253 24.1
Actinidia07247 Actinidia chinensis HOM05D001616 ORTHO05D003701 8.4e-06 57.0 218 24.3
ECA247G0512 Erigeron canadensis HOM05D001616 ORTHO05D003701 8.4e-06 57.0 254 24.0
Pp3c19_2490 Physcomitrium patens HOM05D001616 ORTHO05D004707 8.4e-06 57.0 182 24.7
TWI74G0875 Tripterygium wilfordii HOM05D001616 ORTHO05D003701 8.4e-06 57.0 222 23.4
vmacro03316 Vaccinium macrocarpon HOM05D001616 ORTHO05D003701 8.4e-06 57.0 236 23.3


User provided reference genes

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