Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0074700 Rhododendron simsii HOM05D000147 ORTHO05D048307 2.0e-91 339.3 204 100.0
vmacro10897 Vaccinium macrocarpon HOM05D000147 ORTHO05D005311 1.1e-41 174.1 97 88.7
Actinidia04308 Actinidia chinensis HOM05D000147 ORTHO05D005311 1.3e-37 160.6 97 79.4
MSTRG.23131 Avicennia marina HOM05D000147 ORTHO05D005311 6.9e-36 154.8 97 74.2
QL03p044068 Quercus lobata HOM05D000147 ORTHO05D005311 1.5e-35 153.7 97 75.3
TAR381G0407 Trochodendron aralioides HOM05D000147 ORTHO05D005311 2.6e-35 152.9 100 73.0
CSS0012305 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D005311 5.9e-35 151.8 98 75.5
Cfa008733 Carpinus fangiana HOM05D000147 ORTHO05D005311 1.7e-34 150.2 97 74.2
COL.COLO4_08994 Corchorus olitorius HOM05D000147 ORTHO05D005311 3.8e-34 149.1 97 73.2
Peaxi162Scf00363g00615 Petunia axillaris HOM05D000147 ORTHO05D005311 5.0e-34 148.7 97 72.2
Duzib248G1409 Durio zibethinus HOM05D000147 ORTHO05D005311 6.5e-34 148.3 97 73.2
Lj6C720G7 Lonicera japonica HOM05D000147 ORTHO05D005311 6.5e-34 148.3 97 74.2
Nn5g28890 Nelumbo nucifera HOM05D000147 ORTHO05D005311 6.5e-34 148.3 107 66.4
CiPaw.06G059800 Carya illinoinensis HOM05D000147 ORTHO05D005311 1.1e-33 147.5 97 74.2
MSTRG.11456 Avicennia marina HOM05D000147 ORTHO05D005311 1.4e-33 147.1 97 69.1
Ciclev10030948m.g Citrus clementina HOM05D000147 ORTHO05D005311 1.4e-33 147.1 91 78.0
Gohir.A12G134200 Gossypium hirsutum HOM05D000147 ORTHO05D005311 2.5e-33 146.4 97 72.2
Gorai.008G149300 Gossypium raimondii HOM05D000147 ORTHO05D005311 2.5e-33 146.4 97 72.2
Manes.02G219800 Manihot esculenta HOM05D000147 ORTHO05D005311 2.5e-33 146.4 97 75.3
Oeu016388.3 Olea europaea HOM05D000147 ORTHO05D005311 2.5e-33 146.4 97 72.2
TAR628G0689 Trochodendron aralioides HOM05D000147 ORTHO05D005311 2.5e-33 146.4 107 67.3
Cc11_g00140 Coffea canephora HOM05D000147 ORTHO05D005311 5.5e-33 145.2 97 73.2
Migut.I00007 Erythranthe guttata HOM05D000147 ORTHO05D005311 5.5e-33 145.2 97 71.1
Nitab4.5_0000739g0020 Nicotiana tabacum HOM05D000147 ORTHO05D005311 5.5e-33 145.2 97 72.2
Nitab4.5_0008057g0020 Nicotiana tabacum HOM05D000147 ORTHO05D005311 5.5e-33 145.2 97 72.2
Thecc.02G160800 Theobroma cacao HOM05D000147 ORTHO05D005311 9.4e-33 144.4 97 71.1
Gohir.D12G137800 Gossypium hirsutum HOM05D000147 ORTHO05D005311 1.2e-32 144.1 97 71.1
Aqoxy6G00466 Aquilegia oxysepala HOM05D000147 ORTHO05D005311 1.6e-32 143.7 97 71.1
Sc10g0006770 Simmondsia chinensis HOM05D000147 ORTHO05D005311 1.6e-32 143.7 97 69.1
Sed0001066 Sechium edule HOM05D000147 ORTHO05D005311 2.7e-32 142.9 97 70.1
Solyc02g014350.4 Solanum lycopersicum HOM05D000147 ORTHO05D005311 2.7e-32 142.9 97 71.1
Sopen02g003380 Solanum pennellii HOM05D000147 ORTHO05D005311 2.7e-32 142.9 97 71.1
TWI74G0983 Tripterygium wilfordii HOM05D000147 ORTHO05D005311 4.6e-32 142.1 97 69.1
TWI77G0661 Tripterygium wilfordii HOM05D000147 ORTHO05D005311 4.6e-32 142.1 91 72.5
Duzib132G0553 Durio zibethinus HOM05D000147 ORTHO05D005311 6.1e-32 141.7 91 74.7
THA.LOC104826507 Tarenaya hassleriana HOM05D000147 ORTHO05D005311 6.1e-32 141.7 91 75.8
Atru.chr11.1175 Acer truncatum HOM05D000147 ORTHO05D005311 7.9e-32 141.4 98 70.4
Lsat_1_v5_gn_2_97540 Lactuca sativa HOM05D000147 ORTHO05D005311 7.9e-32 141.4 97 68.0
EL10Ac9g22954 Beta vulgaris HOM05D000147 ORTHO05D005311 1.4e-31 140.6 97 70.1
CANSAT64G1147 Cannabis sativa HOM05D000147 ORTHO05D005311 1.4e-31 140.6 90 73.3
ECA246G2622 Erigeron canadensis HOM05D000147 ORTHO05D005311 1.4e-31 140.6 97 68.0
CAN.G157.20 Capsicum annuum HOM05D000147 ORTHO05D005311 1.8e-31 140.2 97 70.1
ClCG09G004590 Citrullus lanatus HOM05D000147 ORTHO05D005311 5.1e-31 138.7 97 68.0
HanXRQChr15g0472181 Helianthus annuus HOM05D000147 ORTHO05D005311 5.1e-31 138.7 97 69.1
Sed0010099 Sechium edule HOM05D000147 ORTHO05D005311 5.1e-31 138.7 97 68.0
GSVIVG01012038001 Vitis vinifera HOM05D000147 ORTHO05D005311 5.1e-31 138.7 97 70.1
PGR142G0037 Punica granatum HOM05D000147 ORTHO05D005311 1.1e-30 137.5 97 66.0
CsaV3_7G030550 Cucumis sativus L. HOM05D000147 ORTHO05D005311 2.0e-30 136.7 97 67.0
Potri.005G093300 Populus trichocarpa HOM05D000147 ORTHO05D005311 2.0e-30 136.7 97 66.0
Aa31LG8G6540 Aethionema arabicum HOM05D000147 ORTHO05D005311 3.3e-30 136.0 97 71.1
ATR0564G231 Amborella trichopoda HOM05D000147 ORTHO05D005311 3.3e-30 136.0 107 63.6
Potri.007G069800 Populus trichocarpa HOM05D000147 ORTHO05D005311 5.7e-30 135.2 97 64.9
RcHm_v2.0_Chr4g0446611 Rosa chinensis HOM05D000147 ORTHO05D005311 7.4e-30 134.8 97 66.0
BcaC01g01214 Brassica carinata HOM05D000147 ORTHO05D005311 1.3e-29 134.0 93 69.9
FvH4_4g36860 Fragaria vesca HOM05D000147 ORTHO05D005311 1.7e-29 133.7 97 66.0
FAN17G2876 Fragaria x ananassa HOM05D000147 ORTHO05D005311 1.7e-29 133.7 97 66.0
A08p03310 Brassica napus HOM05D000147 ORTHO05D005311 3.7e-29 132.5 97 66.0
C03p89500 Brassica napus HOM05D000147 ORTHO05D005311 3.7e-29 132.5 97 66.0
BolC3t21264H Brassica oleracea HOM05D000147 ORTHO05D005311 3.7e-29 132.5 97 66.0
BraA08t32364Z Brassica rapa HOM05D000147 ORTHO05D005311 3.7e-29 132.5 97 66.0
CiPaw.05G168400 Carya illinoinensis HOM05D000147 ORTHO05D005311 3.7e-29 132.5 91 70.3
MD16G1001500 Malus domestica HOM05D000147 ORTHO05D005311 3.7e-29 132.5 96 65.6
FAN07G2667 Fragaria x ananassa HOM05D000147 ORTHO05D005311 4.8e-29 132.1 97 66.0
MD13G1006500 Malus domestica HOM05D000147 ORTHO05D005311 6.3e-29 131.7 97 66.0
FAN12G4124 Fragaria x ananassa HOM05D000147 ORTHO05D005311 8.2e-29 131.3 97 64.9
Carub.0003s1961 Capsella rubella HOM05D000147 ORTHO05D005311 1.1e-28 131.0 97 67.0
CARHR040190 Cardamine hirsuta HOM05D000147 ORTHO05D005311 1.1e-28 131.0 97 63.9
AL3G33200 Arabidopsis lyrata HOM05D000147 ORTHO05D005311 1.4e-28 130.6 107 62.6
Prupe.1G346700 Prunus persica HOM05D000147 ORTHO05D005311 1.4e-28 130.6 97 66.0
arahy.Tifrunner.gnm1.ann1.6GN5UX Arachis hypogaea HOM05D000147 ORTHO05D005311 1.8e-28 130.2 97 62.9
arahy.Tifrunner.gnm1.ann1.7MKI8I Arachis hypogaea HOM05D000147 ORTHO05D005311 1.8e-28 130.2 97 62.9
CARHR095260 Cardamine hirsuta HOM05D000147 ORTHO05D005311 1.8e-28 130.2 97 67.0
Sabra05G0077400 Salix brachista HOM05D000147 ORTHO05D005311 1.8e-28 130.2 97 63.9
Hund08554 Selenicereus undatus HOM05D000147 ORTHO05D005311 1.8e-28 130.2 97 64.9
Sp3g17770 Schrenkiella parvula HOM05D000147 ORTHO05D005311 2.4e-28 129.8 91 68.1
Eucgr.G02569 Eucalyptus grandis HOM05D000147 ORTHO05D005311 6.9e-28 128.3 97 59.8
Thhalv10011206m.g Eutrema salsugineum HOM05D000147 ORTHO05D005311 6.9e-28 128.3 97 63.9
AL1G57780 Arabidopsis lyrata HOM05D000147 ORTHO05D005311 9.1e-28 127.9 91 68.1
A01p34960 Brassica napus HOM05D000147 ORTHO05D005311 1.5e-27 127.1 91 67.0
C01p44370 Brassica napus HOM05D000147 ORTHO05D005311 1.5e-27 127.1 91 67.0
BolC1t04402H Brassica oleracea HOM05D000147 ORTHO05D005311 1.5e-27 127.1 91 67.0
BraA01t03579Z Brassica rapa HOM05D000147 ORTHO05D005311 1.5e-27 127.1 91 67.0
AT3G19740 Arabidopsis thaliana HOM05D000147 ORTHO05D005311 2.6e-27 126.3 97 63.9
HanXRQChr06g0171471 Helianthus annuus HOM05D000147 ORTHO05D005311 2.6e-27 126.3 97 59.8
HPP92_013075 Vanilla planifolia HOM05D000147 ORTHO05D005311 3.4e-27 125.9 97 61.9
AT1G50140 Arabidopsis thaliana HOM05D000147 ORTHO05D005311 4.5e-27 125.6 91 67.0
CDE04G2917 Ceratophyllum demersum HOM05D000147 ORTHO05D005311 4.5e-27 125.6 93 62.4
Lalb_Chr03g0024801 Lupinus albus HOM05D000147 ORTHO05D005311 4.5e-27 125.6 97 61.9
SEGI_34337 Sequoiadendron giganteum HOM05D000147 ORTHO05D005311 4.5e-27 125.6 95 62.1
Ah.01g001490 Amaranthus hybridus HOM05D000147 ORTHO05D005311 7.7e-27 124.8 97 61.9
Carub.0001s3929 Capsella rubella HOM05D000147 ORTHO05D005311 7.7e-27 124.8 97 61.9
Thhalv10019988m.g Eutrema salsugineum HOM05D000147 ORTHO05D005311 1.0e-26 124.4 97 61.9
Medtr4g074920 Medicago truncatula HOM05D000147 ORTHO05D005311 1.3e-26 124.0 97 62.9
Sp1g37010 Schrenkiella parvula HOM05D000147 ORTHO05D005311 2.2e-26 123.2 97 62.9
TPR.G32339 Trifolium pratense HOM05D000147 ORTHO05D005311 3.8e-26 122.5 97 60.8
Aa31LG10G4010 Aethionema arabicum HOM05D000147 ORTHO05D005311 5.0e-26 122.1 97 62.9
Glyma.11G101600 Glycine max HOM05D000147 ORTHO05D005311 5.0e-26 122.1 90 65.6
Ca_19029_v3 Cicer arietinum L. HOM05D000147 ORTHO05D005311 2.5e-25 119.8 97 58.8
Psat7g173240 Pisum sativum HOM05D000147 ORTHO05D005311 2.5e-25 119.8 97 58.8
Phvul.011G030700 Phaseolus vulgaris HOM05D000147 ORTHO05D005311 3.2e-25 119.4 90 64.4
Glyma.12G027500 Glycine max HOM05D000147 ORTHO05D005311 5.5e-25 118.6 90 64.4
Lalb_Chr19g0139371 Lupinus albus HOM05D000147 ORTHO05D005311 1.2e-24 117.5 97 56.7
PSO675G6018 Papaver somniferum HOM05D000147 ORTHO05D005311 3.6e-24 115.9 97 55.7
Ah.01g012370 Amaranthus hybridus HOM05D000147 ORTHO05D005311 6.1e-24 115.2 97 59.8
PSO170G3341 Papaver somniferum HOM05D000147 ORTHO05D005311 1.0e-23 114.4 106 53.8
PSO210G5900 Papaver somniferum HOM05D000147 ORTHO05D005311 1.0e-23 114.4 106 53.8
VMungo1127G1912 Vigna mungo HOM05D000147 ORTHO05D005311 1.4e-23 114.0 150 46.7
PSO541G5327 Papaver somniferum HOM05D000147 ORTHO05D005311 1.8e-23 113.6 97 54.6
Lj3g0018243 Lotus japonicus HOM05D000147 ORTHO05D005311 6.7e-23 111.7 97 58.8
vmacro14249 Vaccinium macrocarpon HOM05D000147 ORTHO05D426508 4.4e-22 109.0 92 66.3
DCAR_002570 Daucus carota HOM05D000147 ORTHO05D005311 6.3e-21 105.1 97 57.7
MELO3C023601.2 Cucumis melo HOM05D000147 ORTHO05D005311 4.1e-20 102.4 70 67.1
Zm00001eb194420 Zea mays HOM05D000147 ORTHO05D005311 5.3e-20 102.1 91 53.8
HanXRQChr04g0096721 Helianthus annuus HOM05D001137 ORTHO05D048307 1.2e-19 100.9 71 66.2
SHI31059 Sapria himalayana HOM05D000147 ORTHO05D005311 1.0e-18 97.8 70 67.1
SGA_v2.0_scaffold90G27912 Striga asiatica HOM05D000147 ORTHO05D005311 8.5e-18 94.7 62 71.0
Migut.D01933 Erythranthe guttata HOM05D000147 ORTHO05D005311 4.2e-17 92.4 98 50.0
Haze_11745 Corylus avellana HOM05D000147 ORTHO05D005311 2.1e-16 90.1 52 82.7
Lj3g0004493 Lotus japonicus HOM05D000147 ORTHO05D025190 6.1e-16 88.6 83 55.4
AUR62032985 Chenopodium quinoa HOM05D000147 ORTHO05D005311 2.3e-15 86.7 61 68.9
Lj3g0009641 Lotus japonicus HOM05D000147 ORTHO05D005311 7.5e-14 81.6 79 57.0
AUR62017703 Chenopodium quinoa HOM05D000147 ORTHO05D005311 2.8e-13 79.7 51 74.5
SGA_v2.0_scaffold7G04135 Striga asiatica HOM05D000147 ORTHO05D406079 4.2e-09 65.9 72 43.1
SalBow2G1925 Salvia bowleyana HOM05D000147 ORTHO05D005311 1.2e-08 64.3 80 46.2
Migut.D01932 Erythranthe guttata HOM05D000147 ORTHO05D005311 1.8e-07 60.5 63 46.0


User provided reference genes

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