Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 0.0e+00 1173.3 573 100.0
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 0.0e+00 1166.4 573 99.5
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 0.0e+00 1112.4 567 94.9
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 4.7e-311 1070.5 567 91.2
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 8.1e-308 1059.7 567 89.9
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 8.1e-308 1059.7 567 89.4
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 8.1e-308 1059.7 573 89.0
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 3.1e-307 1057.7 561 90.6
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 5.2e-307 1057.0 573 88.5
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 1.2e-306 1055.8 563 90.1
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 2.6e-306 1054.7 567 88.5
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 5.8e-306 1053.5 566 90.5
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 1.7e-305 1052.0 558 90.3
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 4.9e-305 1050.4 564 89.2
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.4e-304 1048.9 561 89.3
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 5.4e-304 1047.0 567 88.5
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 9.2e-304 1046.2 566 88.7
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 2.7e-303 1044.6 567 88.7
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 6.0e-303 1043.5 567 88.0
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 6.0e-303 1043.5 561 88.9
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 1.3e-302 1042.3 573 87.4
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.7e-302 1042.0 567 88.4
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 3.9e-302 1040.8 563 88.1
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 3.9e-302 1040.8 567 87.8
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 3.9e-302 1040.8 567 87.8
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 6.6e-302 1040.0 567 88.2
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 1.9e-301 1038.5 573 87.6
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 5.6e-301 1036.9 563 87.6
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 7.3e-301 1036.6 563 88.6
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 9.6e-301 1036.2 567 87.8
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 1.6e-300 1035.4 567 87.1
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 1.6e-300 1035.4 567 87.1
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 2.8e-300 1034.6 567 88.0
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 1.4e-299 1032.3 563 88.1
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.4e-299 1032.3 567 87.1
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 4.0e-299 1030.8 563 87.7
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 4.0e-299 1030.8 561 87.2
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 4.0e-299 1030.8 573 87.3
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 4.0e-299 1030.8 573 86.9
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 6.9e-299 1030.0 567 86.8
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 1.2e-298 1029.2 567 87.3
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 1.2e-298 1029.2 567 86.9
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.0e-298 1028.5 563 87.6
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 2.6e-298 1028.1 563 87.6
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 2.6e-298 1028.1 563 87.0
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 2.6e-298 1028.1 563 87.0
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 3.4e-298 1027.7 567 87.8
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 4.4e-298 1027.3 563 87.6
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 9.9e-298 1026.2 563 87.4
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 9.9e-298 1026.2 563 87.4
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 9.9e-298 1026.2 567 86.8
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 1.7e-297 1025.4 567 86.6
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 1.7e-297 1025.4 567 86.9
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 6.4e-297 1023.5 573 85.7
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 5.4e-296 1020.4 573 86.0
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 2.1e-295 1018.5 563 87.2
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 2.7e-295 1018.1 567 86.6
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 1.7e-294 1015.4 561 86.6
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 2.3e-294 1015.0 562 85.8
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 3.9e-294 1014.2 567 86.6
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 3.9e-294 1014.2 564 86.7
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 6.6e-294 1013.4 563 85.4
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 1.1e-293 1012.7 561 85.9
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.9e-293 1011.9 561 85.9
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.3e-292 1009.2 567 84.3
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.1e-291 1006.1 564 84.8
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 1.2e-290 1002.7 567 84.1
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 1.5e-290 1002.3 573 83.1
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 7.6e-290 1000.0 556 86.5
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.9e-289 998.0 563 83.5
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 2.9e-289 998.0 564 85.6
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 2.4e-288 995.0 567 85.0
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 3.2e-288 994.6 550 86.7
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.2e-287 992.6 552 85.3
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 1.6e-287 992.3 550 86.4
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.6e-287 992.3 549 86.0
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 3.5e-287 991.1 563 82.9
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 3.5e-287 991.1 557 86.5
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 7.9e-287 989.9 561 83.6
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 1.3e-286 989.2 567 84.8
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.0e-286 988.0 549 85.6
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 1.9e-285 985.3 564 84.2
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 1.9e-285 985.3 551 85.5
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 4.3e-285 984.2 567 84.1
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 2.8e-284 981.5 571 82.8
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.1e-283 979.5 564 83.3
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 2.4e-283 978.4 564 83.5
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 3.1e-283 978.0 564 83.3
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 3.1e-283 978.0 564 83.3
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 3.1e-283 978.0 564 83.7
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 6.9e-283 976.9 564 83.5
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 6.9e-283 976.9 564 83.5
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 6.9e-283 976.9 564 83.5
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 1.2e-282 976.1 564 83.2
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 1.5e-282 975.7 564 83.0
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 3.4e-282 974.5 564 83.3
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.4e-282 974.5 573 83.1
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 5.8e-282 973.8 564 83.3
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 5.8e-282 973.8 564 82.8
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 5.8e-282 973.8 564 82.4
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 9.9e-282 973.0 564 83.7
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.3e-281 972.6 564 83.2
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 1.7e-281 972.2 564 83.2
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 2.2e-281 971.8 569 83.1
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.8e-281 971.1 566 83.2
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 4.9e-281 970.7 534 86.3
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 8.4e-281 969.9 564 83.2
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 8.4e-281 969.9 564 83.2
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 3.2e-280 968.0 562 84.0
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 5.5e-280 967.2 564 82.6
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 2.1e-279 965.3 564 82.8
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 7.9e-279 963.4 564 82.3
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 3.9e-278 961.1 564 81.6
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 5.1e-278 960.7 563 81.3
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 6.7e-278 960.3 564 80.3
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 6.7e-278 960.3 562 83.3
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 5.6e-277 957.2 563 80.6
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 1.3e-276 956.1 563 80.5
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.8e-276 954.9 566 80.0
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 5.5e-272 940.6 575 77.7
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 2.5e-269 931.8 563 78.2
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 1.6e-268 929.1 563 78.5
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.8e-268 928.3 563 81.7
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 3.7e-268 927.9 554 78.5
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 3.4e-266 921.4 554 77.4
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 6.1e-263 910.6 573 75.6
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 5.1e-262 907.5 564 79.1
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 5.1e-262 907.5 524 83.2
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.5e-258 896.0 552 76.6
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 2.7e-255 885.2 562 73.8
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 6.7e-254 880.6 574 73.7
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.7e-252 875.9 566 74.6
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 1.1e-251 873.2 565 74.7
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 2.6e-250 868.6 568 74.5
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 3.8e-249 864.8 568 73.8
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 6.5e-249 864.0 565 74.0
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 1.3e-244 849.7 557 76.3
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 2.1e-239 832.4 563 71.8
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 9.7e-237 823.5 468 82.7
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 2.9e-225 785.4 424 88.9
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.2e-212 742.7 425 82.6
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 2.0e-210 736.1 563 66.6
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 3.2e-203 712.2 572 64.3
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 5.2e-190 668.3 373 83.1
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.0e-181 639.8 417 78.2
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 3.8e-180 635.6 546 55.7
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 3.8e-172 609.0 329 85.1
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.3e-167 594.0 488 55.9
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 2.4e-163 579.7 530 52.3
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 3.0e-153 546.2 292 85.6
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.9e-152 543.5 418 61.0
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 4.8e-135 485.7 567 49.0
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 7.0e-134 481.9 569 49.4
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 9.1e-134 481.5 304 74.7
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 6.1e-130 468.8 468 56.0
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 2.1e-85 320.9 549 39.2
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 3.9e-84 316.6 492 37.6
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 1.5e-83 314.7 213 74.2
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 2.8e-66 257.3 197 67.0
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 2.4e-65 254.2 197 66.0
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 6.6e-60 236.1 166 68.1
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.5e-56 224.9 132 85.6
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 4.5e-48 196.8 133 75.2
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 8.4e-47 192.6 128 76.6
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 3.0e-44 184.1 127 66.1
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 3.3e-43 180.6 166 60.2
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-42 178.7 166 60.2
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 2.1e-42 177.9 166 60.2
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 2.4e-41 174.5 166 59.6
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 9.3e-38 162.5 317 32.8
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 2.5e-30 137.9 496 26.2
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 7.2e-30 136.3 87 71.3
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 1.8e-28 131.7 213 39.9
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 5.7e-27 126.7 91 64.8
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 7.4e-27 126.3 76 71.1
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 2.0e-24 118.2 85 62.4
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 2.7e-21 107.8 184 40.2
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 2.6e-19 101.3 166 41.0
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 8.2e-18 96.3 103 51.5
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 2.0e-11 75.1 46 69.6
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 1.1e-06 59.3 72 54.2
THA.LOC104819113 Tarenaya hassleriana HOM05D000597 ORTHO05D000603 9.4e-06 56.2 152 27.6


User provided reference genes

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