Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 0.0e+00 1174.5 573 100.0
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 0.0e+00 1166.4 573 99.5
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 0.0e+00 1108.2 567 94.5
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 2.3e-310 1068.1 567 91.2
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 4.0e-307 1057.4 567 89.9
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 6.8e-307 1056.6 561 90.6
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 8.9e-307 1056.2 567 89.2
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 1.5e-306 1055.4 573 88.8
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 2.6e-306 1054.7 563 90.1
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 5.8e-306 1053.5 573 88.3
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 2.9e-305 1051.2 567 88.4
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 3.2e-304 1047.7 566 90.1
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 3.2e-304 1047.7 561 89.3
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 7.1e-304 1046.6 558 90.0
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 9.2e-304 1046.2 564 89.0
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 6.0e-303 1043.5 567 88.4
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 1.3e-302 1042.3 561 88.9
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 3.0e-302 1041.2 566 88.3
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 6.6e-302 1040.0 567 87.8
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 6.6e-302 1040.0 573 87.3
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 8.6e-302 1039.6 567 88.4
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.9e-301 1038.5 567 88.2
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 2.5e-301 1038.1 567 88.2
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 4.3e-301 1037.3 563 87.9
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 5.6e-301 1036.9 567 87.7
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 5.6e-301 1036.9 567 87.7
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 2.1e-300 1035.0 573 87.4
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 1.1e-299 1032.7 563 88.5
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 1.1e-299 1032.7 567 87.7
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.1e-299 1032.7 563 87.4
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 3.1e-299 1031.2 567 86.9
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 3.1e-299 1031.2 567 86.9
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 3.1e-299 1031.2 567 87.8
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 2.0e-298 1028.5 561 87.2
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 2.6e-298 1028.1 563 87.9
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 4.4e-298 1027.3 573 86.7
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 5.8e-298 1026.9 567 86.8
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 7.6e-298 1026.5 563 87.6
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 1.3e-297 1025.8 567 87.1
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 1.3e-297 1025.8 573 86.9
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 1.3e-297 1025.8 567 86.8
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.2e-297 1025.0 563 87.4
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 2.2e-297 1025.0 567 86.4
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 2.9e-297 1024.6 563 87.4
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 3.8e-297 1024.2 563 86.9
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 3.8e-297 1024.2 563 86.9
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 3.8e-297 1024.2 567 87.7
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 1.1e-296 1022.7 563 87.4
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 1.1e-296 1022.7 563 87.2
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 1.1e-296 1022.7 563 87.2
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 1.1e-296 1022.7 567 86.6
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 3.2e-296 1021.1 573 85.5
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 3.2e-296 1021.1 567 86.4
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 3.2e-296 1021.1 567 86.8
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 6.0e-295 1016.9 573 85.9
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 1.3e-294 1015.8 567 86.6
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 5.1e-294 1013.8 563 86.9
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 8.7e-294 1013.1 567 86.6
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 1.5e-293 1012.3 561 86.5
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 2.5e-293 1011.5 562 85.6
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.6e-292 1008.8 563 85.3
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.6e-292 1008.8 564 86.3
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.1e-292 1008.4 561 85.7
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 2.1e-292 1008.4 561 85.7
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.1e-291 1006.1 567 84.1
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 9.0e-291 1003.0 564 84.6
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 1.3e-289 999.2 567 84.0
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 2.2e-289 998.4 573 82.9
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 6.4e-289 996.9 556 86.3
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 2.4e-288 995.0 564 85.5
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 4.2e-288 994.2 563 83.3
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.2e-287 992.6 567 84.8
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 6.0e-287 990.3 567 84.8
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 7.9e-287 989.9 550 86.5
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.0e-286 989.6 549 86.0
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.3e-286 989.2 552 85.1
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 2.3e-286 988.4 550 86.2
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 3.0e-286 988.0 557 86.4
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 5.1e-286 987.3 563 82.8
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 5.1e-286 987.3 561 83.6
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.9e-285 985.3 549 85.6
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 2.1e-284 981.9 551 85.3
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 4.8e-284 980.7 567 84.0
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 6.2e-284 980.3 564 83.9
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 1.1e-283 979.5 571 82.7
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 3.4e-282 974.5 564 83.0
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 9.9e-282 973.0 564 83.2
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 9.9e-282 973.0 564 83.3
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-281 972.6 564 83.0
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 1.3e-281 972.6 564 83.0
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.3e-281 972.6 573 82.9
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 2.2e-281 971.8 564 83.2
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 2.2e-281 971.8 564 83.2
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 2.2e-281 971.8 564 83.2
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 4.9e-281 970.7 564 82.8
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 4.9e-281 970.7 564 82.6
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 8.4e-281 969.9 569 83.0
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 1.1e-280 969.5 564 83.2
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 1.1e-280 969.5 564 83.0
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.4e-280 969.1 566 83.0
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 1.9e-280 968.8 564 83.0
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 1.9e-280 968.8 564 82.4
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.9e-280 968.8 564 82.1
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 2.4e-280 968.4 564 83.3
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 4.2e-280 967.6 564 82.8
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 5.5e-280 967.2 562 84.2
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 5.5e-280 967.2 534 86.1
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 2.7e-279 964.9 564 82.8
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 2.7e-279 964.9 564 82.8
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 1.8e-278 962.2 564 82.3
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 6.7e-278 960.3 564 82.4
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 1.1e-277 959.5 562 83.5
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 2.5e-277 958.4 564 81.9
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 5.6e-277 957.2 563 81.2
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 7.4e-277 956.8 564 80.1
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 1.3e-276 956.1 564 81.2
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 3.7e-276 954.5 563 80.5
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 4.8e-276 954.1 563 80.5
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.1e-275 951.4 566 79.9
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 6.0e-271 937.2 575 77.6
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 2.8e-268 928.3 563 78.0
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.1e-267 926.4 563 81.5
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 1.8e-267 925.6 563 78.3
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 4.1e-267 924.5 554 78.3
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 3.8e-265 917.9 554 77.3
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 6.7e-262 907.1 573 75.4
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 1.6e-260 902.5 564 78.7
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 1.6e-260 902.5 524 82.8
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.0e-257 893.3 552 76.6
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.4e-254 882.9 562 73.7
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 5.1e-254 880.9 574 73.7
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 8.2e-252 873.6 566 74.6
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 9.1e-251 870.2 565 74.5
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 2.2e-249 865.5 568 74.3
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.9e-248 862.4 568 73.8
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 4.2e-248 861.3 565 73.8
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 3.1e-243 845.1 557 75.9
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.0e-238 830.1 563 71.8
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 3.7e-236 821.6 468 82.7
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 2.9e-225 785.4 424 88.9
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.4e-211 740.0 425 82.6
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 3.9e-209 731.9 563 66.4
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 3.5e-202 708.8 572 64.2
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.4e-189 665.6 373 83.1
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.0e-181 639.8 417 78.2
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 1.9e-179 633.3 546 55.7
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 4.2e-171 605.5 329 84.8
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.1e-166 590.9 488 55.9
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 9.3e-163 577.8 530 52.3
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 3.3e-152 542.7 292 85.3
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 9.7e-152 541.2 418 61.0
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 4.1e-134 482.6 567 48.9
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 9.1e-134 481.5 304 74.7
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.9e-133 478.8 569 49.2
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 6.7e-129 465.3 468 55.8
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 6.6e-84 315.8 549 38.8
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 2.5e-83 313.9 492 37.0
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 4.7e-82 309.7 213 73.2
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 9.0e-65 252.3 197 66.0
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 7.6e-64 249.2 197 65.0
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 7.3e-59 232.6 166 67.5
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 9.9e-56 222.2 132 84.8
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 4.5e-48 196.8 133 75.2
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 8.4e-47 192.6 128 76.6
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 5.1e-44 183.3 127 66.9
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 3.3e-43 180.6 166 60.2
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-42 178.7 166 60.2
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 2.1e-42 177.9 166 60.2
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 2.4e-41 174.5 166 59.6
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 9.3e-38 162.5 317 32.8
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.5e-30 137.9 87 72.4
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 9.4e-30 136.0 496 26.0
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 1.8e-28 131.7 213 39.9
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 3.3e-27 127.5 76 71.1
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 6.3e-26 123.2 91 63.7
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 3.4e-24 117.5 85 62.4
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 2.7e-21 107.8 184 40.2
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 2.6e-19 101.3 166 41.0
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 8.2e-18 96.3 103 51.5
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 2.0e-11 75.1 46 69.6
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 1.1e-06 59.3 72 54.2
THA.LOC104819113 Tarenaya hassleriana HOM05D000597 ORTHO05D000603 9.4e-06 56.2 152 27.6


User provided reference genes

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