Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 5.2e-287 990.3 498 100.0
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 6.6e-197 691.0 487 74.3
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 7.3e-188 661.0 490 72.2
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 6.8e-186 654.4 501 70.7
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 1.2e-185 653.7 496 70.8
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 2.7e-182 642.5 461 72.9
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 7.8e-182 641.0 494 69.0
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.3e-181 640.2 483 70.0
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 1.7e-181 639.8 491 70.1
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 1.7e-181 639.8 491 69.7
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 8.6e-181 637.5 466 71.0
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 1.9e-180 636.3 458 71.6
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 4.3e-180 635.2 490 68.8
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 1.2e-179 633.6 491 68.2
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 2.8e-179 632.5 489 68.7
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 2.8e-179 632.5 480 69.0
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 4.7e-179 631.7 481 68.2
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 4.7e-179 631.7 494 68.6
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 2.3e-178 629.4 458 71.4
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 2.3e-178 629.4 494 68.4
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 6.8e-178 627.9 491 68.4
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 1.2e-177 627.1 488 67.6
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 3.4e-177 625.5 479 68.3
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 5.8e-177 624.8 491 67.4
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 7.5e-177 624.4 480 69.0
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 3.7e-176 622.1 496 67.3
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 8.3e-176 620.9 464 70.0
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 1.1e-175 620.5 487 68.2
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 2.4e-175 619.4 464 69.8
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 3.2e-175 619.0 488 67.0
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 3.2e-175 619.0 491 67.8
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 4.1e-175 618.6 521 65.8
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 5.4e-175 618.2 464 69.8
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 7.1e-175 617.8 492 68.3
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 7.1e-175 617.8 481 69.6
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 9.2e-175 617.5 493 67.5
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 1.6e-174 616.7 488 67.8
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 1.6e-174 616.7 453 72.4
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 1.6e-174 616.7 464 69.4
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 1.6e-174 616.7 473 68.3
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 2.7e-174 615.9 444 71.6
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 2.7e-174 615.9 491 67.0
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 2.7e-174 615.9 473 68.3
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 3.5e-174 615.5 481 67.6
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 3.5e-174 615.5 491 67.2
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 4.6e-174 615.1 452 72.1
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 4.6e-174 615.1 449 70.8
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 6.0e-174 614.8 488 66.6
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 6.0e-174 614.8 491 67.2
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 7.8e-174 614.4 487 67.1
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 2.3e-173 612.8 491 67.0
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 3.0e-173 612.5 491 66.6
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 6.6e-173 611.3 439 72.4
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 1.1e-172 610.5 461 69.4
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 1.5e-172 610.1 487 67.6
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 1.9e-172 609.8 491 67.0
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 7.3e-172 607.8 449 70.6
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 4.7e-171 605.1 448 70.3
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 1.1e-170 604.0 485 66.4
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 1.8e-170 603.2 446 69.7
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 1.8e-170 603.2 486 66.0
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 3.1e-170 602.4 454 68.9
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 4.0e-170 602.1 491 64.8
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 1.2e-169 600.5 486 65.6
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 1.5e-169 600.1 441 70.3
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 1.5e-169 600.1 491 65.2
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 2.6e-169 599.4 491 65.6
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 2.6e-169 599.4 500 64.6
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 2.6e-169 599.4 500 64.6
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 4.4e-169 598.6 500 65.8
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 5.8e-169 598.2 484 65.7
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 7.6e-169 597.8 457 68.9
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 1.3e-168 597.0 440 68.9
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 1.7e-168 596.7 490 65.9
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 4.9e-168 595.1 446 69.7
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 6.4e-168 594.7 441 69.8
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 4.1e-167 592.0 490 65.5
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 7.1e-167 591.3 477 66.7
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 7.1e-167 591.3 491 64.4
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 2.1e-166 589.7 468 67.5
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 8.6e-165 584.3 438 68.5
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 8.6e-165 584.3 441 68.5
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 5.6e-164 581.6 402 76.4
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 1.6e-163 580.1 482 64.5
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 2.1e-163 579.7 428 70.6
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 2.1e-163 579.7 428 70.6
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 8.1e-163 577.8 441 67.6
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 8.1e-163 577.8 444 68.0
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 1.4e-162 577.0 429 69.0
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 1.4e-162 577.0 429 69.0
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 1.4e-162 577.0 445 68.3
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 1.8e-162 576.6 423 70.2
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 1.8e-162 576.6 426 69.7
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 2.4e-162 576.2 488 64.5
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 2.4e-162 576.2 421 71.3
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 3.1e-162 575.9 445 67.9
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 1.5e-161 573.5 489 64.6
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 2.0e-161 573.2 429 69.0
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 2.0e-161 573.2 488 64.1
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 2.6e-161 572.8 493 64.1
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 3.4e-161 572.4 493 64.1
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 3.4e-161 572.4 425 69.9
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 1.3e-160 570.5 425 69.4
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 1.7e-160 570.1 421 69.8
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 1.7e-160 570.1 421 69.8
CARHR064740 Cardamine hirsuta HOM05D004678 ORTHO05D005880 1.7e-160 570.1 444 66.2
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 2.2e-160 569.7 534 60.7
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 2.4e-159 566.2 445 66.7
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 1.1e-156 557.4 488 62.3
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 7.6e-153 544.7 411 69.3
BcaB05g24692 Brassica carinata HOM05D004678 ORTHO05D005880 1.0e-149 534.3 421 67.0
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 9.9e-145 517.7 406 66.0
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 1.5e-137 493.8 427 60.2
Mapoly0007s0122 Marchantia polymorpha HOM05D004678 ORTHO05D005880 3.8e-136 489.2 443 58.5
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.4e-135 487.3 424 59.0
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 2.5e-135 486.5 559 52.1
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 6.9e-130 468.4 358 67.9
Cre16.g672385 Chlamydomonas reinhardtii HOM05D004678 ORTHO05D005880 2.9e-128 463.0 421 58.2
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 3.8e-128 462.6 361 66.8
MD14G1018500 Malus domestica HOM05D004678 ORTHO05D005880 1.2e-126 457.6 461 57.5
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 2.7e-126 456.4 441 57.8
PRCOL_00004069 Prasinoderma coloniale HOM05D004678 ORTHO05D005880 4.1e-114 416.0 409 53.1
MCO01G265 Micromonas commoda HOM05D004678 ORTHO05D005880 1.7e-112 410.6 476 46.8
Medtr6g033600 Medicago truncatula HOM05D004678 ORTHO05D005880 7.4e-108 395.2 304 68.8
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 3.7e-107 392.9 372 59.1
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 9.1e-106 388.3 352 60.5
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 5.7e-100 369.0 316 63.9
AagrBONN_evm.TU.Sc2ySwM_362.1592 Anthoceros agrestis HOM05D004678 ORTHO05D005880 2.3e-93 347.1 306 59.2
CDE07G1916 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 1.8e-90 337.4 304 60.5
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 1.6e-89 334.3 446 45.5
Nitab4.5_0003152g0020 Nicotiana tabacum HOM05D004678 ORTHO05D005880 1.4e-82 311.2 488 41.6
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.8e-77 294.3 228 66.7
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 6.4e-75 285.8 227 66.1
GSVIVG01025260001 Vitis vinifera HOM05D004678 ORTHO05D005880 4.1e-74 283.1 170 82.9
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 2.8e-70 270.4 226 64.6
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 2.8e-70 270.4 226 64.6
Prupe.8G056800 Prunus persica HOM05D004678 ORTHO05D005880 3.6e-70 270.0 190 72.6
DCAR_023441 Daucus carota HOM05D004678 ORTHO05D005880 3.9e-56 223.4 158 72.2
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 2.2e-51 207.6 121 79.3
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 5.4e-50 203.0 151 67.5
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 4.0e-45 186.8 192 56.2
SMO367G0035 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 5.2e-45 186.4 148 63.5
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 1.2e-36 158.7 86 83.7
SMO035G0001 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.2e-33 148.7 199 49.2
PGSC0003DMG400008416 Solanum tuberosum HOM05D004678 ORTHO05D005880 1.1e-31 142.1 156 51.9
Cfa024628 Carpinus fangiana HOM05D004678 ORTHO05D005880 3.3e-31 140.6 421 30.2
Psat0s2699g0120 Pisum sativum HOM05D004678 ORTHO05D005880 1.3e-30 138.7 77 84.4
SHI09055 Sapria himalayana HOM05D004678 ORTHO05D005880 8.4e-27 125.9 137 51.1
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 2.7e-25 120.9 133 50.4
CDE07G1051 Ceratophyllum demersum HOM05D004678 ORTHO05D043902 1.9e-23 114.8 119 56.3
SMO343G0161 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 3.1e-21 107.5 164 42.1
CAN.G137.23 Capsicum annuum HOM05D004678 ORTHO05D000493 6.9e-21 106.3 211 36.0
Psat0s2699g0200 Pisum sativum HOM05D004678 ORTHO05D043902 4.3e-15 87.0 50 82.0
PRCOL_00006728 Prasinoderma coloniale HOM05D004678 ORTHO05D333305 2.3e-08 64.7 200 30.5
Nitab4.5_0001520g0040 Nicotiana tabacum HOM05D004678 ORTHO05D012214 6.7e-08 63.2 29 93.1
COL.COLO4_19765 Corchorus olitorius HOM05D004678 ORTHO05D005880 1.1e-07 62.4 38 71.1


User provided reference genes

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