Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 1.1e-125 453.4 230 100.0
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 1.7e-70 270.0 236 69.9
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 1.5e-55 220.3 229 58.1
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 2.0e-55 219.9 227 57.3
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.2e-54 216.5 229 58.1
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 6.4e-54 214.9 130 84.6
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 1.9e-53 213.4 234 56.8
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.9e-53 213.4 219 57.5
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 4.1e-53 212.2 229 55.0
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 2.7e-52 209.5 226 54.9
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 7.8e-52 208.0 214 57.0
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 1.0e-51 207.6 212 59.0
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 1.3e-51 207.2 218 55.5
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 1.3e-51 207.2 214 57.5
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 1.7e-51 206.8 137 81.0
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 1.7e-51 206.8 228 53.5
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 2.3e-51 206.5 228 55.3
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 3.0e-51 206.1 230 52.6
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 3.9e-51 205.7 120 85.8
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 3.9e-51 205.7 223 55.2
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 5.0e-51 205.3 214 56.5
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 6.6e-51 204.9 214 56.5
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 6.6e-51 204.9 230 53.5
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 8.6e-51 204.5 130 79.2
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 8.6e-51 204.5 230 53.9
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 1.5e-50 203.8 222 55.0
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 1.5e-50 203.8 136 78.7
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 1.9e-50 203.4 228 52.2
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 1.9e-50 203.4 228 52.2
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 2.5e-50 203.0 224 54.5
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 2.5e-50 203.0 213 55.9
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 2.5e-50 203.0 213 55.9
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 2.5e-50 203.0 212 54.7
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.5e-50 203.0 230 53.5
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 4.3e-50 202.2 231 51.9
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 7.3e-50 201.4 207 58.0
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 9.5e-50 201.1 225 52.0
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 9.5e-50 201.1 117 86.3
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 9.5e-50 201.1 117 86.3
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 1.2e-49 200.7 222 52.7
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 1.2e-49 200.7 231 52.8
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 1.2e-49 200.7 271 47.6
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.2e-49 200.7 229 53.7
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 2.1e-49 199.9 216 53.7
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 2.8e-49 199.5 225 52.0
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 2.8e-49 199.5 227 51.1
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 3.6e-49 199.1 225 51.6
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 4.7e-49 198.7 114 86.0
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 4.7e-49 198.7 228 51.8
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 8.0e-49 198.0 230 52.2
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 1.1e-48 197.6 131 77.9
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 1.4e-48 197.2 214 52.3
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 1.4e-48 197.2 214 52.3
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.8e-48 196.8 226 51.8
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 3.1e-48 196.1 261 48.7
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 3.1e-48 196.1 233 49.8
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 3.1e-48 196.1 217 53.5
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 8.9e-48 194.5 214 50.9
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 1.2e-47 194.1 113 83.2
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 2.6e-47 193.0 212 51.9
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 4.4e-47 192.2 126 77.0
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 9.8e-47 191.0 212 51.9
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 9.8e-47 191.0 214 52.8
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 9.8e-47 191.0 214 52.3
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 9.8e-47 191.0 213 52.6
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 9.8e-47 191.0 230 50.9
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 9.8e-47 191.0 226 48.7
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 9.8e-47 191.0 214 52.3
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 1.3e-46 190.7 226 50.4
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 1.7e-46 190.3 225 50.7
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 2.2e-46 189.9 117 79.5
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.2e-46 189.9 115 80.9
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 2.9e-46 189.5 128 75.0
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 2.9e-46 189.5 117 79.5
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 3.7e-46 189.1 215 52.6
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 3.7e-46 189.1 214 51.9
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 6.4e-46 188.3 225 50.2
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 6.4e-46 188.3 128 74.2
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 6.4e-46 188.3 128 74.2
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 6.4e-46 188.3 128 74.2
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 8.3e-46 188.0 228 50.0
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 8.3e-46 188.0 228 50.0
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 8.3e-46 188.0 228 50.0
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 8.3e-46 188.0 128 74.2
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 8.3e-46 188.0 128 74.2
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 1.1e-45 187.6 227 50.7
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 1.4e-45 187.2 128 73.4
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 1.9e-45 186.8 128 73.4
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 1.9e-45 186.8 128 73.4
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 1.9e-45 186.8 128 73.4
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 1.9e-45 186.8 128 73.4
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 2.4e-45 186.4 223 50.2
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 5.4e-45 185.3 113 79.6
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 5.4e-45 185.3 211 51.7
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 9.2e-45 184.5 128 72.7
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 1.2e-44 184.1 213 50.2
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-44 184.1 212 50.5
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-44 184.1 214 49.5
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 1.6e-44 183.7 214 49.5
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.1e-44 183.3 214 49.1
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 2.7e-44 183.0 226 50.0
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 2.7e-44 183.0 114 78.9
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 2.7e-44 183.0 114 78.9
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.5e-44 182.6 214 48.6
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 3.5e-44 182.6 230 48.7
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 3.5e-44 182.6 123 76.4
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.6e-44 182.2 214 50.0
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 4.6e-44 182.2 114 78.9
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.0e-44 181.8 214 48.6
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 6.0e-44 181.8 114 78.9
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.3e-43 179.9 214 48.6
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 3.9e-43 179.1 216 50.0
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 5.1e-43 178.7 226 50.0
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 6.6e-43 178.3 118 75.4
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 6.6e-43 178.3 114 77.2
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 1.1e-42 177.6 226 48.2
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 1.1e-42 177.6 114 76.3
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-42 177.2 114 76.3
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 1.9e-42 176.8 221 48.4
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.3e-42 176.0 128 68.8
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 4.3e-42 175.6 210 49.5
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 5.6e-42 175.3 138 68.1
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 7.3e-42 174.9 110 75.5
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 7.3e-42 174.9 110 75.5
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 2.8e-41 172.9 226 47.3
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 1.4e-40 170.6 226 46.9
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 4.0e-40 169.1 151 63.6
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.4e-39 166.0 214 46.3
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.4e-39 165.6 214 46.3
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 9.9e-39 164.5 216 49.5
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-37 161.0 214 45.3
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 1.1e-37 161.0 123 63.4
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 1.9e-37 160.2 132 61.4
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 3.2e-37 159.5 222 47.3
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 5.4e-37 158.7 118 63.6
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 6.0e-36 155.2 123 61.8
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 3.9e-35 152.5 118 66.9
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 1.5e-34 150.6 102 77.5
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.5e-34 149.8 109 70.6
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 2.1e-33 146.7 87 83.9
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 3.8e-30 136.0 199 42.2
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 4.9e-30 135.6 102 73.5
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 9.6e-26 121.3 119 48.7
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.4e-24 117.5 70 82.9
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 6.9e-24 115.2 77 74.0
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 1.2e-23 114.4 71 81.7
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 1.2e-23 114.4 71 81.7
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 1.5e-23 114.0 115 46.1
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 7.6e-23 111.7 71 78.9
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 4.2e-21 105.9 64 82.8
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 2.7e-20 103.2 64 71.9
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 3.5e-20 102.8 65 80.0
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.3e-17 94.4 56 76.8
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.6e-17 94.0 56 76.8
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 6.2e-17 92.0 70 72.9
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 1.1e-16 91.3 113 39.8
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 3.4e-15 86.3 109 36.7
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 4.5e-15 85.9 55 70.9
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.7e-14 84.0 63 69.8
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 3.8e-14 82.8 50 74.0
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.1e-13 81.3 63 68.3
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 3.0e-11 73.2 48 72.9
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 8.7e-11 71.6 63 63.5
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 8.7e-11 71.6 63 63.5
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 4.5e-07 59.3 47 66.0
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 1.3e-06 57.8 123 35.8


User provided reference genes

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