Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 9.3e-234 813.1 405 100.0
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 2.3e-171 605.9 406 76.4
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 6.4e-158 561.2 386 73.8
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 3.9e-155 552.0 390 70.3
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 3.6e-153 545.4 393 69.0
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 1.4e-152 543.5 387 69.3
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 1.8e-152 543.1 406 67.7
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 5.2e-152 541.6 399 68.2
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 3.4e-151 538.9 379 70.2
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 4.4e-151 538.5 397 67.5
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 4.4e-151 538.5 390 69.2
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 1.7e-150 536.6 390 69.0
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 8.3e-150 534.3 367 70.8
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 8.3e-150 534.3 380 70.3
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 1.4e-149 533.5 366 71.6
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 4.1e-149 531.9 398 67.1
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 7.1e-149 531.2 404 64.4
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 7.1e-149 531.2 397 65.5
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 7.1e-149 531.2 397 65.5
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 1.2e-148 530.4 407 63.9
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 1.2e-148 530.4 397 66.0
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 1.6e-148 530.0 354 72.3
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 2.1e-148 529.6 397 65.5
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 3.5e-148 528.9 399 66.7
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 4.6e-148 528.5 366 69.7
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 4.6e-148 528.5 397 66.0
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 7.8e-148 527.7 395 65.6
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 2.3e-147 526.2 382 65.4
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 3.0e-147 525.8 352 73.0
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 3.9e-147 525.4 389 66.3
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 3.9e-147 525.4 374 68.4
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 5.1e-147 525.0 366 69.9
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 5.1e-147 525.0 351 73.5
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 5.1e-147 525.0 399 66.4
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 8.6e-147 524.2 352 71.9
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 8.6e-147 524.2 399 66.2
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 1.1e-146 523.9 399 63.4
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 1.1e-146 523.9 367 69.8
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 2.5e-146 522.7 398 63.1
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 7.3e-146 521.2 398 66.6
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 1.2e-145 520.4 400 64.5
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 1.6e-145 520.0 358 69.6
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 1.6e-145 520.0 393 66.4
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.1e-145 519.6 384 67.2
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 2.1e-145 519.6 384 67.2
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 3.6e-145 518.8 397 62.5
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 3.6e-145 518.8 384 67.4
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 6.2e-145 518.1 394 67.0
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.1e-144 517.3 389 67.4
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 1.4e-144 516.9 405 63.2
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 1.4e-144 516.9 405 63.2
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 2.4e-144 516.2 405 64.0
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.4e-144 516.2 370 68.9
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 6.8e-144 514.6 367 69.5
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 8.9e-144 514.2 374 66.0
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 3.4e-143 512.3 380 66.6
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.4e-143 512.3 380 66.6
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 3.4e-143 512.3 366 68.0
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 9.9e-143 510.8 392 65.8
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.3e-142 510.4 397 67.5
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 1.7e-142 510.0 383 66.8
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.7e-142 510.0 396 63.9
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 1.7e-142 510.0 384 65.9
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.7e-142 510.0 345 73.0
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.2e-142 509.6 399 67.2
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 2.9e-142 509.2 384 66.7
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 4.9e-142 508.4 392 65.8
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 6.4e-142 508.1 403 65.3
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 8.4e-142 507.7 392 64.8
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.4e-141 506.9 353 70.3
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 1.4e-141 506.9 393 63.4
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 7.1e-141 504.6 366 68.0
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 9.2e-141 504.2 388 65.5
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 9.2e-141 504.2 346 72.0
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 1.2e-140 503.8 394 64.5
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.6e-140 503.4 394 64.2
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 2.1e-140 503.1 363 67.5
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 6.0e-140 501.5 382 64.7
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 3.0e-139 499.2 398 62.3
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 3.9e-139 498.8 390 63.6
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 5.1e-139 498.4 373 67.0
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.1e-138 497.3 398 63.3
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 1.6e-137 493.4 405 62.0
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 6.2e-137 491.5 366 65.8
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 1.8e-136 490.0 344 69.5
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 2.4e-136 489.6 381 64.6
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 4.0e-136 488.8 346 68.8
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 4.0e-136 488.8 376 65.7
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 5.2e-136 488.4 384 65.1
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 6.9e-136 488.0 342 69.6
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 9.0e-136 487.6 390 63.6
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 1.2e-135 487.3 366 66.1
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 4.4e-135 485.3 345 69.0
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 7.6e-135 484.6 331 70.1
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.2e-134 483.0 348 68.7
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 3.8e-134 482.3 352 67.3
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 4.9e-134 481.9 364 62.9
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 6.4e-134 481.5 401 62.3
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 1.4e-133 480.3 391 61.9
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 1.9e-133 479.9 390 62.3
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 5.4e-133 478.4 352 65.6
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 2.1e-132 476.5 314 74.5
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 2.7e-132 476.1 363 65.3
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 2.7e-132 476.1 366 62.0
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 1.3e-131 473.8 352 67.3
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.7e-131 473.4 317 73.8
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 2.5e-130 469.5 387 61.8
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 4.8e-129 465.3 349 66.8
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 9.0e-128 461.1 366 62.8
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.2e-127 460.7 389 61.2
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 3.8e-126 455.7 395 60.5
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 8.4e-126 454.5 346 64.7
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 2.4e-125 453.0 371 62.0
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 4.2e-125 452.2 370 61.9
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 1.6e-124 450.3 383 59.5
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 5.1e-123 445.3 351 64.4
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 7.4e-122 441.4 357 63.3
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.7e-118 430.3 322 66.8
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 1.6e-116 423.7 370 57.6
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 3.3e-114 416.0 400 55.8
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 2.4e-112 409.8 350 59.1
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.6e-111 406.4 347 59.7
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.1e-109 401.0 234 79.5
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.6e-108 397.1 293 66.9
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 2.3e-107 393.3 326 57.7
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 3.0e-107 392.9 353 56.9
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.2e-105 386.7 347 56.8
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.4e-104 384.0 309 63.8
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 9.4e-101 371.3 363 54.3
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 4.6e-100 369.0 387 54.5
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 4.1e-96 355.9 213 79.8
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 4.5e-95 352.4 319 56.7
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 7.7e-95 351.7 191 84.3
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 4.7e-92 342.4 191 79.6
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 6.7e-83 312.0 237 63.7
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 1.1e-82 311.2 220 68.2
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 2.6e-82 310.1 190 75.8
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 4.2e-77 292.7 394 39.8
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 6.3e-73 278.9 241 61.8
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.0e-71 273.9 301 48.5
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.9e-70 270.0 233 58.8
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 1.6e-68 264.2 298 44.3
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 3.0e-67 260.0 336 42.0
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 1.1e-64 251.5 226 56.2
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 2.3e-59 233.8 220 54.5
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 3.8e-54 216.5 383 36.3
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 4.9e-49 199.5 203 54.2
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 1.6e-47 194.5 325 33.5
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 9.5e-45 185.3 126 70.6
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.7e-33 147.9 147 53.7
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.4e-24 117.5 119 55.5
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 3.0e-22 110.5 136 45.6
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.5e-21 107.5 62 80.6
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 7.3e-21 105.9 57 80.7


User provided reference genes

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