Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0066400 Rhododendron simsii HOM05D005599 ORTHO05D006921 7.9e-67 256.9 124 100.0
vmacro14440 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 4.0e-63 244.6 124 93.5
Hma1.2p1_0096F.1_g047800 Hydrangea macrophylla HOM05D005599 ORTHO05D006921 4.5e-62 241.1 123 92.7
Dinv14427 Davidia involucrata HOM05D005599 ORTHO05D006921 6.5e-61 237.3 123 91.1
Cc11_g08600 Coffea canephora HOM05D005599 ORTHO05D006921 8.4e-61 236.9 123 91.1
QL01p001565 Quercus lobata HOM05D005599 ORTHO05D006921 7.1e-60 233.8 122 91.0
Prupe.1G325600 Prunus persica HOM05D005599 ORTHO05D006921 1.2e-59 233.0 124 88.7
MD16G1027400 Malus domestica HOM05D005599 ORTHO05D006921 7.9e-59 230.3 123 87.0
Duzib251G0393 Durio zibethinus HOM05D005599 ORTHO05D006921 2.3e-58 228.8 121 90.1
MD13G1024900 Malus domestica HOM05D005599 ORTHO05D006921 2.3e-58 228.8 123 86.2
CiPaw.06G011400 Carya illinoinensis HOM05D005599 ORTHO05D006921 3.0e-58 228.4 123 87.8
Manes.15G128100 Manihot esculenta HOM05D005599 ORTHO05D006921 3.0e-58 228.4 123 87.8
AUR62032768 Chenopodium quinoa HOM05D005599 ORTHO05D006921 6.7e-58 227.3 124 84.7
Nitab4.5_0000426g0280 Nicotiana tabacum HOM05D005599 ORTHO05D006921 6.7e-58 227.3 124 87.1
Nitab4.5_0004230g0050 Nicotiana tabacum HOM05D005599 ORTHO05D006921 6.7e-58 227.3 124 87.1
PGSC0003DMG400005984 Solanum tuberosum HOM05D005599 ORTHO05D006921 6.7e-58 227.3 124 87.1
Peaxi162Scf00253g01125 Petunia axillaris HOM05D005599 ORTHO05D006921 8.7e-58 226.9 123 87.0
CAN.G1244.3 Capsicum annuum HOM05D005599 ORTHO05D006921 2.5e-57 225.3 124 85.5
Gohir.A03G120800 Gossypium hirsutum HOM05D005599 ORTHO05D006921 3.3e-57 224.9 124 85.5
Thecc.02G282300 Theobroma cacao HOM05D005599 ORTHO05D006921 3.3e-57 224.9 124 86.3
TWI79G1349 Tripterygium wilfordii HOM05D005599 ORTHO05D006921 4.3e-57 224.6 124 87.1
Solyc04g007700.3 Solanum lycopersicum HOM05D005599 ORTHO05D006921 5.7e-57 224.2 124 85.5
MSTRG.6631 Avicennia marina HOM05D005599 ORTHO05D006921 9.6e-57 223.4 124 85.5
Cfa008617 Carpinus fangiana HOM05D005599 ORTHO05D006921 9.6e-57 223.4 124 84.7
COL.COLO4_20491 Corchorus olitorius HOM05D005599 ORTHO05D006921 9.6e-57 223.4 126 87.3
Lj6g0000510 Lotus japonicus HOM05D005599 ORTHO05D006921 1.6e-56 222.6 123 87.0
Ciclev10017195m.g Citrus clementina HOM05D005599 ORTHO05D006921 2.1e-56 222.2 123 83.7
Potri.008G129900 Populus trichocarpa HOM05D005599 ORTHO05D006921 2.1e-56 222.2 124 83.9
Gohir.D02G144100 Gossypium hirsutum HOM05D005599 ORTHO05D006921 2.8e-56 221.9 124 84.7
Sopen04g002790 Solanum pennellii HOM05D005599 ORTHO05D006921 2.8e-56 221.9 124 84.7
ClCG07G006660 Citrullus lanatus HOM05D005599 ORTHO05D006921 4.8e-56 221.1 123 86.2
CsaV3_5G013870 Cucumis sativus L. HOM05D005599 ORTHO05D006921 4.8e-56 221.1 123 85.4
Glyma.16G057902 Glycine max HOM05D005599 ORTHO05D006921 8.2e-56 220.3 123 84.6
Sed0017153 Sechium edule HOM05D005599 ORTHO05D006921 8.2e-56 220.3 124 83.9
Ca_21512_v3 Cicer arietinum L. HOM05D005599 ORTHO05D006921 1.1e-55 219.9 123 86.2
FAN05G3069 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.1e-55 219.9 124 84.7
FAN12G4015 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.1e-55 219.9 124 84.7
FAN25G3147 Fragaria x ananassa HOM05D005599 ORTHO05D006921 1.1e-55 219.9 124 84.7
RcHm_v2.0_Chr4g0425701 Rosa chinensis HOM05D005599 ORTHO05D006921 1.1e-55 219.9 124 84.7
Glyma.19G089600 Glycine max HOM05D005599 ORTHO05D006921 1.4e-55 219.5 124 83.9
GSVIVG01011752001 Vitis vinifera HOM05D005599 ORTHO05D006921 1.8e-55 219.2 123 83.7
MBI16_g23758_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 2.4e-55 218.8 123 83.7
SGA_v2.0_scaffold181G39695 Striga asiatica HOM05D005599 ORTHO05D006921 4.1e-55 218.0 122 83.6
MELO3C018308.2 Cucumis melo HOM05D005599 ORTHO05D006921 5.3e-55 217.6 123 84.6
FAN07G1516 Fragaria x ananassa HOM05D005599 ORTHO05D006921 6.9e-55 217.2 124 83.9
Lsat_1_v5_gn_9_79661 Lactuca sativa HOM05D005599 ORTHO05D006921 6.9e-55 217.2 124 85.5
EL10Ac9g21851 Beta vulgaris HOM05D005599 ORTHO05D006921 9.0e-55 216.9 124 82.3
Potri.010G112300 Populus trichocarpa HOM05D005599 ORTHO05D006921 9.0e-55 216.9 124 82.3
Hund09673 Selenicereus undatus HOM05D005599 ORTHO05D006921 9.0e-55 216.9 123 82.9
SGA_v2.0_scaffold154G37132 Striga asiatica HOM05D005599 ORTHO05D006921 9.0e-55 216.9 122 82.8
TAR622G1178 Trochodendron aralioides HOM05D005599 ORTHO05D006921 9.0e-55 216.9 123 82.9
HanXRQChr08g0212121 Helianthus annuus HOM05D005599 ORTHO05D006921 1.2e-54 216.5 124 84.7
Phvul.001G094900 Phaseolus vulgaris HOM05D005599 ORTHO05D006921 1.2e-54 216.5 123 82.9
Zm00001eb161570 Zea mays HOM05D005599 ORTHO05D006921 1.2e-54 216.5 117 85.5
Atru.chr11.497 Acer truncatum HOM05D005599 ORTHO05D006921 1.5e-54 216.1 120 84.2
vmacro00414 Vaccinium macrocarpon HOM05D005599 ORTHO05D006921 2.6e-54 215.3 107 95.3
ATR0796G095 Amborella trichopoda HOM05D005599 ORTHO05D006921 3.4e-54 214.9 120 84.2
THA.LOC104823847 Tarenaya hassleriana HOM05D005599 ORTHO05D006921 3.4e-54 214.9 123 82.9
Sc14g0007100 Simmondsia chinensis HOM05D005599 ORTHO05D006921 4.5e-54 214.5 123 82.9
FvH4_4g19980 Fragaria vesca HOM05D005599 ORTHO05D006921 1.0e-53 213.4 124 83.9
Os01g0606050 Oryza sativa ssp. japonica HOM05D005599 ORTHO05D006921 1.0e-53 213.4 117 85.5
HanXRQChr12g0364441 Helianthus annuus HOM05D005599 ORTHO05D006921 1.7e-53 212.6 124 83.1
DCAR_023596 Daucus carota HOM05D005599 ORTHO05D006921 2.9e-53 211.8 123 78.9
TPR.G19139 Trifolium pratense HOM05D005599 ORTHO05D006921 2.9e-53 211.8 123 82.9
Medtr1g069405 Medicago truncatula HOM05D005599 ORTHO05D006921 3.8e-53 211.5 123 82.9
ECA236G1659 Erigeron canadensis HOM05D005599 ORTHO05D006921 5.0e-53 211.1 124 82.3
Aa31LG2G8490 Aethionema arabicum HOM05D005599 ORTHO05D006921 6.5e-53 210.7 124 78.2
Lalb_Chr08g0237401 Lupinus albus HOM05D005599 ORTHO05D006921 8.4e-53 210.3 123 82.1
Psat6g049960 Pisum sativum HOM05D005599 ORTHO05D006921 1.4e-52 209.5 123 82.9
VMungo0464G0261 Vigna mungo HOM05D005599 ORTHO05D006921 1.4e-52 209.5 123 80.5
Ah.04g163140 Amaranthus hybridus HOM05D005599 ORTHO05D006921 2.5e-52 208.8 123 79.7
PSO170G3715 Papaver somniferum HOM05D005599 ORTHO05D006921 3.2e-52 208.4 122 79.5
AL1G27050 Arabidopsis lyrata HOM05D005599 ORTHO05D006921 5.5e-52 207.6 123 77.2
BcaB02g06563 Brassica carinata HOM05D005599 ORTHO05D006921 5.5e-52 207.6 123 78.0
Dinv07654 Davidia involucrata HOM05D005599 ORTHO05D006921 5.5e-52 207.6 105 92.4
Carub.0001s1476 Capsella rubella HOM05D005599 ORTHO05D006921 7.2e-52 207.2 123 77.2
HPP92_003868 Vanilla planifolia HOM05D005599 ORTHO05D006921 9.3e-52 206.8 122 82.0
HPP92_003899 Vanilla planifolia HOM05D005599 ORTHO05D006921 9.3e-52 206.8 122 82.0
DCAR_026778 Daucus carota HOM05D005599 ORTHO05D006921 1.2e-51 206.5 123 77.2
AT1G14990 Arabidopsis thaliana HOM05D005599 ORTHO05D006921 1.6e-51 206.1 123 75.6
CSS0007655 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 2.7e-51 205.3 106 91.5
CSS0037826 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 2.7e-51 205.3 106 91.5
RcHm_v2.0_Chr4g0441361 Rosa chinensis HOM05D005599 ORTHO05D006921 3.5e-51 204.9 131 77.1
unitig_899.g15269 Utricularia gibba HOM05D005599 ORTHO05D006921 3.5e-51 204.9 118 79.7
A06p11010 Brassica napus HOM05D005599 ORTHO05D006921 4.6e-51 204.5 123 76.4
CARHR015530 Cardamine hirsuta HOM05D005599 ORTHO05D006921 4.6e-51 204.5 123 74.0
PGR004G1422 Punica granatum HOM05D005599 ORTHO05D006921 4.6e-51 204.5 124 78.2
CDE07G0704 Ceratophyllum demersum HOM05D005599 ORTHO05D006921 6.1e-51 204.1 122 78.7
Sp1g13380 Schrenkiella parvula HOM05D005599 ORTHO05D006921 1.0e-50 203.4 123 75.6
A09p61660 Brassica napus HOM05D005599 ORTHO05D006921 1.3e-50 203.0 121 76.0
Eucgr.B01298 Eucalyptus grandis HOM05D005599 ORTHO05D006921 1.3e-50 203.0 123 77.2
CSS0001207 Camellia sinensis var. sinensis HOM05D005599 ORTHO05D006921 3.0e-50 201.8 106 86.8
BolC5t30050H Brassica oleracea HOM05D005599 ORTHO05D006921 5.1e-50 201.1 123 75.6
Oeu003383.1 Olea europaea HOM05D005599 ORTHO05D006921 1.9e-49 199.1 107 86.0
Aqoxy3G01068 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 3.3e-49 198.4 120 76.7
BolC8t52072H Brassica oleracea HOM05D005599 ORTHO05D006921 3.3e-49 198.4 136 69.1
AUR62042684 Chenopodium quinoa HOM05D005599 ORTHO05D006921 3.3e-49 198.4 110 81.8
Cpa.g.sc65.146 Carica papaya HOM05D005599 ORTHO05D006921 1.3e-48 196.4 104 88.5
Oeu045860.1 Olea europaea HOM05D005599 ORTHO05D006921 1.6e-48 196.1 105 85.7
SGA_v2.0_scaffold6G03128 Striga asiatica HOM05D005599 ORTHO05D006921 2.2e-48 195.7 123 76.4
arahy.Tifrunner.gnm1.ann1.UU8CC3 Arachis hypogaea HOM05D005599 ORTHO05D006921 2.8e-48 195.3 107 85.0
CANSAT11G1373 Cannabis sativa HOM05D005599 ORTHO05D006921 4.8e-48 194.5 123 74.8
Haze_10995 Corylus avellana HOM05D005599 ORTHO05D006921 4.8e-48 194.5 112 81.2
BraA09t41538Z Brassica rapa HOM05D005599 ORTHO05D006921 1.1e-47 193.4 139 66.9
Gorai.005G161400 Gossypium raimondii HOM05D005599 ORTHO05D006921 1.4e-47 193.0 107 84.1
arahy.Tifrunner.gnm1.ann1.5FG4B2 Arachis hypogaea HOM05D005599 ORTHO05D006921 3.1e-47 191.8 105 84.8
arahy.Tifrunner.gnm1.ann1.5G098T Arachis hypogaea HOM05D005599 ORTHO05D006921 6.9e-47 190.7 106 84.0
Sabra08G0098500 Salix brachista HOM05D005599 ORTHO05D006921 6.9e-47 190.7 107 82.2
C05p13060 Brassica napus HOM05D005599 ORTHO05D006921 7.7e-46 187.2 131 68.7
Sabra10G0082600 Salix brachista HOM05D005599 ORTHO05D006921 1.9e-44 182.6 104 80.8
PSO782G0484 Papaver somniferum HOM05D005599 ORTHO05D006921 2.5e-44 182.2 107 78.5
Migut.M00054 Erythranthe guttata HOM05D005599 ORTHO05D006921 4.2e-44 181.4 123 74.0
SEGI_33740 Sequoiadendron giganteum HOM05D005599 ORTHO05D006921 1.6e-43 179.5 115 73.0
Thhalv10009435m.g Eutrema salsugineum HOM05D005599 ORTHO05D006921 2.1e-43 179.1 106 75.5
Sed0011013 Sechium edule HOM05D005599 ORTHO05D006921 1.0e-42 176.8 106 79.2
BraA06t24281Z Brassica rapa HOM05D005599 ORTHO05D006921 1.4e-42 176.4 113 70.8
C08p45240 Brassica napus HOM05D005599 ORTHO05D006921 3.9e-42 174.9 104 74.0
Aqoxy1G03319 Aquilegia oxysepala HOM05D005599 ORTHO05D006921 2.4e-39 165.6 104 74.0
BcaC07g38244 Brassica carinata HOM05D005599 ORTHO05D006921 5.3e-39 164.5 106 70.8
C08p09930 Brassica napus HOM05D005599 ORTHO05D006921 5.3e-39 164.5 106 70.8
BolC8t48670H Brassica oleracea HOM05D005599 ORTHO05D006921 5.3e-39 164.5 106 70.8
AUR62014127 Chenopodium quinoa HOM05D005599 ORTHO05D006921 2.0e-38 162.5 86 87.2
Eucgr.E01608 Eucalyptus grandis HOM05D005599 ORTHO05D006921 4.1e-31 138.3 107 63.6
Pp3c16_10100 Physcomitrium patens HOM05D005599 ORTHO05D006921 5.9e-30 134.4 111 53.2
arahy.Tifrunner.gnm1.ann1.XM49AS Arachis hypogaea HOM05D005599 ORTHO05D006921 1.1e-28 130.2 66 87.9
BcaC05g25431 Brassica carinata HOM05D005599 ORTHO05D006921 1.1e-28 130.2 123 53.7
Eucgr.B02904 Eucalyptus grandis HOM05D005599 ORTHO05D006921 2.1e-27 125.9 95 62.1
Mapoly0035s0140 Marchantia polymorpha HOM05D005599 ORTHO05D006921 1.8e-26 122.9 109 51.4
SGA_v2.0_scaffold2G00929 Striga asiatica HOM05D005599 ORTHO05D006921 3.0e-26 122.1 65 84.6
MBI16_g23757_MAGBIO Magnolia biondii HOM05D005599 ORTHO05D006921 4.5e-22 108.2 69 75.4
MBI16_g23756_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D016475 5.0e-21 104.8 70 71.4
Nn4g24251 Nelumbo nucifera HOM05D005599 ORTHO05D006921 1.2e-19 100.1 57 82.5
CBR_g40805 Chara braunii HOM05D005599 ORTHO05D006921 3.4e-17 92.0 65 61.5
SGA_v2.0_scaffold135G34854 Striga asiatica HOM05D005599 ORTHO05D006921 1.0e-13 80.5 44 72.7
DCAR_032107 Daucus carota HOM05D005599 ORTHO05D006921 1.3e-13 80.1 50 68.0
QL08p008929 Quercus lobata HOM05D005599 ORTHO05D006921 1.7e-08 63.2 50 64.0


User provided reference genes

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