Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0065900 Rhododendron simsii HOM05D005158 ORTHO05D005510 7.1e-198 693.7 349 100.0
Rhsim09G0065800 Rhododendron simsii HOM05D005158 ORTHO05D005510 7.1e-190 667.2 350 96.9
vmacro00408 Vaccinium macrocarpon HOM05D005158 ORTHO05D005510 1.5e-155 553.1 368 79.9
CSS0029988 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 3.5e-136 488.8 363 72.2
Actinidia36249 Actinidia chinensis HOM05D005158 ORTHO05D005510 1.6e-128 463.4 367 68.7
Dinv28033 Davidia involucrata HOM05D005158 ORTHO05D005510 2.2e-127 459.5 352 69.6
CSS0001942 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 4.7e-125 451.8 333 71.8
Potri.010G111100 Populus trichocarpa HOM05D005158 ORTHO05D005510 6.3e-122 441.4 324 69.4
TAR374G1701 Trochodendron aralioides HOM05D005158 ORTHO05D005510 8.3e-122 441.0 384 65.9
Sabra10G0081500 Salix brachista HOM05D005158 ORTHO05D005510 9.2e-121 437.6 324 68.8
Prupe.1G327200 Prunus persica HOM05D005158 ORTHO05D005510 5.0e-119 431.8 356 64.9
Ciclev10015117m.g Citrus clementina HOM05D005158 ORTHO05D005510 9.5e-118 427.6 274 77.7
GSVIVG01011734001 Vitis vinifera HOM05D005158 ORTHO05D005510 2.1e-117 426.4 259 80.7
Duzib251G0375 Durio zibethinus HOM05D005158 ORTHO05D005510 1.0e-116 424.1 351 66.7
TWI75G0580 Tripterygium wilfordii HOM05D005158 ORTHO05D005510 4.0e-116 422.2 292 71.6
MD16G1026300 Malus domestica HOM05D005158 ORTHO05D005510 1.5e-115 420.2 367 62.4
Manes.17G078700 Manihot esculenta HOM05D005158 ORTHO05D005510 2.0e-115 419.9 287 72.8
Cfa008628 Carpinus fangiana HOM05D005158 ORTHO05D005510 2.6e-115 419.5 335 66.3
QL03p033448 Quercus lobata HOM05D005158 ORTHO05D005510 2.6e-115 419.5 345 66.4
RcHm_v2.0_Chr4g0441611 Rosa chinensis HOM05D005158 ORTHO05D005510 3.4e-115 419.1 364 63.7
HanXRQChr08g0212241 Helianthus annuus HOM05D005158 ORTHO05D005510 3.7e-114 415.6 362 62.4
Nn4g24217 Nelumbo nucifera HOM05D005158 ORTHO05D005510 3.7e-114 415.6 257 78.6
FAN17G2123 Fragaria x ananassa HOM05D005158 ORTHO05D005510 6.4e-114 414.8 265 76.2
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 1.4e-113 413.7 279 74.9
CiPaw.05G195800 Carya illinoinensis HOM05D005158 ORTHO05D005510 2.4e-113 412.9 336 65.2
SalBow8G1650 Salvia bowleyana HOM05D005158 ORTHO05D005510 5.4e-113 411.8 363 60.3
SalBow8G5629 Salvia bowleyana HOM05D005158 ORTHO05D005510 9.2e-113 411.0 363 60.1
FvH4_4g32690 Fragaria vesca HOM05D005158 ORTHO05D005510 1.2e-112 410.6 265 76.2
MD06G1226600 Malus domestica HOM05D005158 ORTHO05D005510 4.6e-112 408.7 367 59.9
Lsat_1_v5_gn_8_45001 Lactuca sativa HOM05D005158 ORTHO05D005510 3.0e-111 406.0 365 61.1
FAN12G3950 Fragaria x ananassa HOM05D005158 ORTHO05D005510 5.0e-111 405.2 274 73.0
Dinv27619 Davidia involucrata HOM05D005158 ORTHO05D005510 1.9e-110 403.3 334 63.2
GSVIVG01008427001 Vitis vinifera HOM05D005158 ORTHO05D005510 2.8e-109 399.4 247 77.7
Sc14g0006290 Simmondsia chinensis HOM05D005158 ORTHO05D005510 2.3e-108 396.4 360 59.4
QL10p028515 Quercus lobata HOM05D005158 ORTHO05D005510 4.0e-108 395.6 263 73.0
Cc11_g08400 Coffea canephora HOM05D005158 ORTHO05D005510 1.2e-107 394.0 267 71.9
CANSAT64G2776 Cannabis sativa HOM05D005158 ORTHO05D005510 1.5e-107 393.7 351 59.8
SGA_v2.0_scaffold234G43623 Striga asiatica HOM05D005158 ORTHO05D005510 1.5e-107 393.7 259 75.7
FvH4_5g11940 Fragaria vesca HOM05D005158 ORTHO05D005510 2.6e-107 392.9 283 69.6
Sc14g0007050 Simmondsia chinensis HOM05D005158 ORTHO05D005510 9.8e-107 391.0 259 74.5
Thecc.03G054800 Theobroma cacao HOM05D005158 ORTHO05D005510 1.3e-106 390.6 354 58.8
Cc11_g08410 Coffea canephora HOM05D005158 ORTHO05D005510 1.7e-106 390.2 346 59.2
Ciclev10008271m.g Citrus clementina HOM05D005158 ORTHO05D005510 4.9e-106 388.7 346 59.8
FAN04G1228 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.1e-105 387.5 372 56.7
RcHm_v2.0_Chr7g0178481 Rosa chinensis HOM05D005158 ORTHO05D005510 1.9e-105 386.7 348 60.3
Carub.0002s1765 Capsella rubella HOM05D005158 ORTHO05D005510 4.1e-105 385.6 329 62.3
FAN18G0401 Fragaria x ananassa HOM05D005158 ORTHO05D005510 4.1e-105 385.6 367 55.9
FAN18G4517 Fragaria x ananassa HOM05D005158 ORTHO05D005510 4.1e-105 385.6 291 67.7
Peaxi162Scf00159g01112 Petunia axillaris HOM05D005158 ORTHO05D005510 7.0e-105 384.8 280 69.6
PGR119G0382 Punica granatum HOM05D005158 ORTHO05D005510 1.2e-104 384.0 258 75.6
CAN.G236.18 Capsicum annuum HOM05D005158 ORTHO05D005510 1.6e-104 383.6 326 62.0
FAN18G3280 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.6e-104 383.6 258 72.5
COL.COLO4_37683 Corchorus olitorius HOM05D000282 ORTHO05D005510 2.0e-104 383.3 338 58.9
Haze_10977 Corylus avellana HOM05D005158 ORTHO05D005510 2.0e-104 383.3 415 53.0
PSO478G5200 Papaver somniferum HOM05D005158 ORTHO05D005510 2.7e-104 382.9 306 64.7
MSTRG.13599 Avicennia marina HOM05D005158 ORTHO05D005510 4.6e-104 382.1 310 66.1
Phvul.003G032200 Phaseolus vulgaris HOM05D005158 ORTHO05D005510 1.0e-103 380.9 347 60.5
Eucgr.G02179 Eucalyptus grandis HOM05D005158 ORTHO05D005510 1.3e-103 380.6 270 69.3
FvH4_5g17290 Fragaria vesca HOM05D005158 ORTHO05D005510 2.3e-103 379.8 364 55.5
PSO017G1154 Papaver somniferum HOM05D005158 ORTHO05D005510 5.0e-103 378.6 306 64.1
Aqoxy3G00071 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 8.6e-103 377.9 256 73.0
Duzib205G1388 Durio zibethinus HOM05D005158 ORTHO05D005510 1.1e-102 377.5 327 59.6
Migut.L00352 Erythranthe guttata HOM05D005158 ORTHO05D005510 5.6e-102 375.2 309 64.1
CSS0029687 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 2.8e-101 372.9 239 77.8
Sabra15G0037900 Salix brachista HOM05D005158 ORTHO05D005510 3.6e-101 372.5 269 68.0
FAN08G3331 Fragaria x ananassa HOM05D005158 ORTHO05D005510 4.7e-101 372.1 309 63.1
FAN13G1699 Fragaria x ananassa HOM05D005158 ORTHO05D005510 4.7e-101 372.1 312 62.2
MELO3C014995.2 Cucumis melo HOM05D005158 ORTHO05D005510 1.1e-100 370.9 343 59.8
Sopen05g014580 Solanum pennellii HOM05D005158 ORTHO05D005510 1.1e-100 370.9 265 69.8
Lalb_Chr17g0338591 Lupinus albus HOM05D005158 ORTHO05D005510 1.4e-100 370.5 347 58.5
CsaV3_5G015040 Cucumis sativus L. HOM05D005158 ORTHO05D005510 3.1e-100 369.4 308 64.3
FAN22G1395 Fragaria x ananassa HOM05D005158 ORTHO05D005510 5.2e-100 368.6 264 71.2
ClCG07G007220 Citrullus lanatus HOM05D005158 ORTHO05D005510 2.0e-99 366.7 330 60.0
Haze_18844 Corylus avellana HOM05D005158 ORTHO05D005510 2.0e-99 366.7 312 62.2
HanXRQChr08g0212251 Helianthus annuus HOM05D005158 ORTHO05D005510 2.6e-99 366.3 366 56.6
CiPaw.15G143000 Carya illinoinensis HOM05D005158 ORTHO05D005510 4.4e-99 365.5 260 69.2
Atru.chr9.1740 Acer truncatum HOM05D005158 ORTHO05D005510 7.5e-99 364.8 245 73.5
Lj2g0016958 Lotus japonicus HOM05D005158 ORTHO05D005510 9.9e-99 364.4 258 71.7
Lj6A744G51 Lonicera japonica HOM05D005158 ORTHO05D005510 4.6e-96 355.5 219 79.0
AUR62014187 Chenopodium quinoa HOM05D005158 ORTHO05D005510 1.7e-95 353.6 247 69.2
MSTRG.4576 Avicennia marina HOM05D005158 ORTHO05D005510 2.3e-95 353.2 247 68.8
Sed0000270 Sechium edule HOM05D005158 ORTHO05D005510 6.6e-95 351.7 343 56.9
Oeu046166.1 Olea europaea HOM05D005158 ORTHO05D005510 5.6e-94 348.6 248 68.5
ATR0665G468 Amborella trichopoda HOM05D005158 ORTHO05D005510 1.8e-92 343.6 289 60.6
Migut.D01553 Erythranthe guttata HOM05D005158 ORTHO05D005510 5.2e-92 342.0 247 66.8
CDE05G1850 Ceratophyllum demersum HOM05D005158 ORTHO05D005510 2.0e-91 340.1 253 69.2
FAN13G2578 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.4e-91 339.3 309 59.2
Cc04_g06310 Coffea canephora HOM05D005158 ORTHO05D005510 7.6e-91 338.2 281 61.9
ECA233G1067 Erigeron canadensis HOM05D005158 ORTHO05D005510 3.2e-89 332.8 223 71.3
Ah.02g127790 Amaranthus hybridus HOM05D005158 ORTHO05D005510 9.2e-89 331.3 351 54.1
SalBow1G1317 Salvia bowleyana HOM05D005158 ORTHO05D005510 2.7e-88 329.7 247 67.2
Os03g0707200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 6.0e-88 328.6 277 59.6
VMungo1215G0718 Vigna mungo HOM05D005158 ORTHO05D005510 6.6e-87 325.1 477 43.6
Hund20682 Selenicereus undatus HOM05D005158 ORTHO05D005510 4.0e-84 315.8 211 73.0
CSS0046275 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 6.9e-84 315.1 198 78.3
Solyc05g017900.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 5.8e-83 312.0 233 68.2
AUR62039517 Chenopodium quinoa HOM05D005158 ORTHO05D005510 2.7e-80 303.1 395 46.3
HPP92_016287 Vanilla planifolia HOM05D005158 ORTHO05D005510 1.6e-77 293.9 245 60.8
Oeu003374.1 Olea europaea HOM05D005158 ORTHO05D005510 9.9e-67 258.1 274 55.5
Potri.008G130950 Populus trichocarpa HOM05D005158 ORTHO05D005510 4.6e-64 249.2 237 57.0
FAN07G0555 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.9e-63 246.1 176 71.0
HPP92_016306 Vanilla planifolia HOM05D005158 ORTHO05D005510 2.6e-59 233.4 265 51.7
Dinv14415 Davidia involucrata HOM05D005158 ORTHO05D005510 4.6e-56 222.6 385 43.6
AagrBONN_evm.TU.Sc2ySwM_344.3657 Anthoceros agrestis HOM05D005158 ORTHO05D005510 2.3e-55 220.3 241 48.1
Cpa.g.sc570.2 Carica papaya HOM05D005158 ORTHO05D005510 2.5e-54 216.9 203 58.6
Prupe.5G232900 Prunus persica HOM05D005158 ORTHO05D005510 1.6e-53 214.2 135 73.3
Thecc.02G284700 Theobroma cacao HOM05D005158 ORTHO05D005510 2.2e-53 213.8 164 65.9
SEGI_17459 Sequoiadendron giganteum HOM05D005158 ORTHO05D005510 5.3e-52 209.1 182 56.0
Pp3c5_19920 Physcomitrium patens HOM05D005158 ORTHO05D005510 3.6e-48 196.4 236 40.7
AUR62014186 Chenopodium quinoa HOM05D005158 ORTHO05D005510 4.6e-48 196.1 210 50.5
Zm00001eb054470 Zea mays HOM05D005158 ORTHO05D005510 2.3e-39 167.2 124 61.3
Zm00001eb280420 Zea mays HOM05D005158 ORTHO05D005510 1.7e-37 161.0 145 57.2
Duzib068G0898 Durio zibethinus HOM05D005158 ORTHO05D005510 6.3e-37 159.1 258 40.7
PRCOL_00003969 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 1.2e-35 154.8 242 40.1
Prupe.5G232800 Prunus persica HOM05D005158 ORTHO05D005510 3.3e-30 136.7 183 48.6
PGR044G0956 Punica granatum HOM05D005158 ORTHO05D005510 4.4e-30 136.3 196 43.9
Oeu014055.2 Olea europaea HOM05D005158 ORTHO05D005510 7.4e-30 135.6 86 72.1
MD16G1025900 Malus domestica HOM05D005158 ORTHO05D005510 1.7e-29 134.4 78 87.2
Manes.06G007150 Manihot esculenta HOM05D005158 ORTHO05D005510 2.9e-26 123.6 139 51.1
Thecc.02G284900 Theobroma cacao HOM05D005158 ORTHO05D005510 6.5e-26 122.5 77 80.5
C06p44960 Brassica napus HOM05D005158 ORTHO05D005510 9.7e-22 108.6 107 57.0
HanXRQChr08g0212271 Helianthus annuus HOM05D005158 ORTHO05D005510 1.4e-20 104.8 63 81.0
Manes.09G075257 Manihot esculenta HOM05D005158 ORTHO05D005510 5.0e-18 96.3 59 83.1
AagrBONN_evm.TU.Sc2ySwM_368.719 Anthoceros agrestis HOM05D005158 ORTHO05D005510 1.9e-17 94.4 258 28.3
HPP92_027195 Vanilla planifolia HOM05D005158 ORTHO05D005510 3.2e-17 93.6 133 39.1
RcHm_v2.0_Chr7g0199801 Rosa chinensis HOM05D005158 ORTHO05D005510 2.3e-15 87.4 61 67.2
Aqoxy2G01678 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 9.8e-14 82.0 62 54.8
Gohir.D02G122150 Gossypium hirsutum HOM05D005158 ORTHO05D005510 1.3e-13 81.6 85 49.4
Pp3c9_21990 Physcomitrium patens HOM05D005158 ORTHO05D005510 6.3e-13 79.3 255 27.1
HanXRQChr08g0212291 Helianthus annuus HOM05D005158 ORTHO05D005510 2.1e-08 64.3 64 48.4
Gorai.005G131900 Gossypium raimondii HOM05D005158 ORTHO05D005510 8.0e-08 62.4 36 66.7
TAR622G0559 Trochodendron aralioides HOM05D005158 ORTHO05D005510 8.0e-08 62.4 50 66.0
MCO04G437 Micromonas commoda HOM05D005158 ORTHO05D005510 2.0e-06 57.8 244 27.0


User provided reference genes

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