Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 2893.2 1481 100.0
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1850.5 1390 74.5
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 1705.6 1373 68.0
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 1697.9 1369 67.3
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 1673.7 1372 66.3
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 1645.9 1372 66.3
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 1645.6 1372 63.8
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 1631.3 1371 63.5
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 1612.8 1388 63.7
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 1612.4 1373 63.3
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 1610.5 1372 63.4
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 1609.7 1371 63.1
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 1607.8 1372 64.1
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 1593.2 1372 62.1
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 1587.8 1372 62.9
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1587.0 1370 62.2
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 1586.6 1372 62.3
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 1583.9 1417 61.1
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 1583.2 1369 62.1
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 1580.1 1360 62.9
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 1578.5 1362 62.2
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 1577.4 1372 61.6
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 1577.0 1370 61.8
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 1575.8 1372 61.8
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1573.9 1372 61.6
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 1573.9 1372 61.6
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 1572.8 1372 61.4
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 1570.8 1374 62.2
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 1570.4 1370 61.2
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 1570.1 1372 61.6
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 1567.7 1372 61.4
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 1566.6 1372 61.6
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 1566.2 1372 60.9
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 1565.4 1374 61.2
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 1562.4 1372 60.9
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 1558.5 1361 61.4
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 1557.0 1372 60.8
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 1550.4 1370 60.9
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 1543.9 1369 60.7
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 1539.6 1372 59.8
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 1538.1 1258 66.5
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1536.5 1370 60.2
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1531.2 1371 60.6
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 1528.8 1368 60.4
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 1528.8 1394 58.5
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 1526.1 1372 60.2
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 1521.5 1372 59.8
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 1520.8 1374 59.8
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 1516.1 1372 59.5
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1515.4 1367 60.0
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 1513.8 1375 60.7
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 1504.6 1371 60.6
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 1493.4 1372 58.8
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 1486.9 1372 58.3
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1485.7 1370 59.0
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 1484.2 1370 58.7
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 1479.9 1375 58.0
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 1469.5 1370 58.2
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 1468.4 1367 58.6
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 1468.0 1282 62.1
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 1467.2 1367 58.6
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 1460.7 1370 58.3
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1460.3 1365 58.4
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1460.3 1370 58.2
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1460.3 1369 58.3
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 1460.3 1369 58.3
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 1459.9 1397 57.5
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1458.7 1334 59.8
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 1458.4 1374 57.9
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1457.2 1370 58.2
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 1457.2 1372 58.1
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 1456.4 1628 52.3
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 1451.8 1367 57.9
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 1450.6 1367 58.0
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 1450.3 1368 58.2
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 1446.4 1362 57.0
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1438.7 1277 61.3
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 1436.0 1372 57.9
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 1435.2 1366 57.8
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1428.3 1369 57.0
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 1428.3 1372 57.5
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 1419.4 1258 60.7
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1406.7 1371 56.6
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 1405.2 1375 56.4
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1405.2 1267 60.6
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 1401.7 1371 56.3
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1400.6 1371 56.2
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 1376.7 1446 54.1
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 1373.6 1207 61.8
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 1365.5 1420 55.1
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 1352.0 1375 55.1
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 1338.6 1377 54.3
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 1337.0 1371 54.4
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 1294.3 1264 56.6
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1276.9 1375 53.1
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 1246.9 1371 51.5
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1235.7 1356 51.7
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 1207.6 1114 59.2
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1204.9 1378 50.6
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1121.7 1370 48.0
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1079.7 897 63.8
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 1.6e-270 937.2 1213 47.9
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 6.6e-269 931.8 1390 41.0
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 1.0e-261 907.9 1385 40.5
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 3.4e-257 892.9 1382 40.5
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 5.6e-236 822.4 710 62.0
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 3.1e-234 816.6 546 75.3
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 6.9e-218 762.3 515 75.1
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 6.9e-218 762.3 949 45.4
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 2.7e-206 723.8 801 50.7
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 6.1e-198 696.0 534 68.2
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 4.4e-188 663.3 1373 35.3
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 2.0e-153 548.1 839 43.3
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 7.3e-151 539.7 360 76.7
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 1.5e-143 515.4 325 80.6
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 5.6e-135 486.9 362 68.2
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.1e-127 462.6 304 78.6
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.7e-120 438.7 444 55.6
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 7.1e-114 416.8 424 55.0
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.6e-113 415.6 407 54.8
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 1.3e-112 412.5 407 55.8
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.7e-105 388.3 370 54.9
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 9.0e-93 346.7 507 43.6
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 2.5e-87 328.6 200 79.5
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 5.1e-72 277.7 211 67.8
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 1.3e-62 246.5 173 71.7
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 7.0e-61 240.7 174 69.5
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.9e-51 208.8 199 56.3
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 3.8e-51 208.4 140 75.0
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 6.1e-49 201.1 237 47.7
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 2.4e-45 189.1 96 95.8
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.4e-45 189.1 98 91.8
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 2.4e-45 189.1 97 92.8
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 1.7e-43 183.0 119 74.8
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.9e-43 182.2 93 93.5
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 2.3e-40 172.6 131 64.9
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 1.8e-37 162.9 93 81.7
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 5.0e-35 154.8 138 59.4
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 4.3e-34 151.8 101 72.3
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 1.0e-32 147.1 99 69.7
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 3.7e-30 138.7 93 71.0
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 9.2e-29 134.0 99 64.6
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.0e-28 132.9 82 75.6
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.0e-28 132.9 82 75.6
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.0e-28 132.9 82 75.6
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.0e-28 132.9 82 75.6
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.0e-28 132.9 82 75.6
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.0e-28 132.9 82 75.6
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.7e-28 132.5 82 74.4
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 3.9e-27 128.6 82 73.2
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 8.6e-27 127.5 98 62.2
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 4.7e-25 121.7 81 69.1
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 8.3e-22 110.9 108 62.0
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 9.2e-21 107.5 69 71.0
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.6e-20 106.7 69 71.0
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 5.6e-18 98.2 89 56.2
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 2.0e-15 89.7 51 78.4
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 5.8e-15 88.2 76 60.5
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 3.9e-11 75.5 52 69.2
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.8e-09 69.3 36 86.1
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 6.2e-09 68.2 51 60.8
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 2.6e-07 62.8 56 55.4
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 5.8e-07 61.6 54 55.6


User provided reference genes

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