Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 0.0e+00 1864.7 961 100.0
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 2.1e-122 444.5 550 52.7
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 2.9e-84 317.8 472 46.2
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 4.8e-79 300.4 453 47.5
Rhsim09G0062600 Rhododendron simsii HOM05D005642 ORTHO05D006672 7.4e-72 276.6 145 98.6
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 5.7e-64 250.4 460 41.7
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.0e-52 213.0 444 37.2
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.0e-52 213.0 444 37.2
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 3.0e-41 174.9 487 33.9
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 1.6e-37 162.5 491 33.0
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 3.0e-36 158.3 451 33.3
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 2.1e-34 152.1 491 32.2
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 1.2e-32 146.4 464 32.1
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 1.1e-30 139.8 476 30.9
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 1.4e-30 139.4 502 30.7
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 9.2e-30 136.7 485 29.9
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 3.5e-29 134.8 569 27.9
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 4.6e-29 134.4 443 31.6
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 1.1e-27 129.8 451 31.9
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 2.5e-27 128.6 591 28.1
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 5.6e-27 127.5 438 29.9
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 5.6e-27 127.5 455 30.1
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 9.5e-27 126.7 458 29.7
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 3.6e-26 124.8 445 31.9
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 6.2e-26 124.0 491 29.7
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 2.3e-25 122.1 476 28.4
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 6.8e-25 120.6 471 30.1
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 4.4e-24 117.9 520 28.5
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 7.5e-24 117.1 476 31.1
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 1.7e-23 115.9 528 28.0
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 2.2e-23 115.5 480 30.0
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 2.2e-23 115.5 482 27.6
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 2.9e-23 115.2 482 28.0
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 3.7e-23 114.8 457 29.8
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 4.9e-23 114.4 493 30.2
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 8.3e-23 113.6 473 29.6
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.1e-22 113.2 480 29.8
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 9.2e-22 110.2 436 29.4
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 1.6e-21 109.4 474 28.1
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 2.1e-21 109.0 293 34.8
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 2.3e-20 105.5 474 28.9
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 3.0e-20 105.1 281 34.2
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 3.9e-20 104.8 443 30.9
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 1.9e-19 102.4 423 28.4
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 2.5e-19 102.1 156 57.1
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 3.3e-19 101.7 507 28.2
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 3.3e-19 101.7 177 45.2
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 2.8e-18 98.6 468 28.6
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 2.8e-18 98.6 481 26.4
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 1.8e-17 95.9 471 25.9
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.8e-17 95.9 159 51.6
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 4.0e-17 94.7 468 27.6
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 8.9e-17 93.6 471 28.2
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 1.2e-16 93.2 443 29.1
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 2.6e-16 92.0 474 27.6
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 5.8e-16 90.9 473 27.7
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 9.9e-16 90.1 158 40.5
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 9.9e-16 90.1 502 25.9
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.7e-15 89.4 164 51.2
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 3.8e-15 88.2 437 30.4
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 3.2e-14 85.1 496 26.4
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 7.1e-14 84.0 409 28.4
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 1.2e-13 83.2 468 27.6
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 2.1e-13 82.4 160 51.9
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 2.1e-13 82.4 148 46.6
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 4.6e-13 81.3 462 25.3
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 6.0e-13 80.9 149 38.3
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 1.3e-12 79.7 196 33.2
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 3.0e-12 78.6 82 57.3
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 3.0e-12 78.6 424 26.7
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 3.0e-12 78.6 430 29.1
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 3.9e-12 78.2 112 42.9
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 3.9e-12 78.2 427 28.3
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 5.1e-12 77.8 160 46.9
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 5.1e-12 77.8 437 27.2
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 6.6e-12 77.4 275 28.0
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 6.6e-12 77.4 163 36.8
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 6.6e-12 77.4 187 35.8
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 6.6e-12 77.4 163 41.7
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 8.6e-12 77.0 466 28.3
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 1.1e-11 76.6 163 36.8
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 1.1e-11 76.6 163 36.8
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 2.5e-11 75.5 470 26.0
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 4.3e-11 74.7 161 36.6
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 7.3e-11 73.9 317 30.9
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 1.2e-10 73.2 161 36.6
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 1.2e-10 73.2 173 34.1
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 2.1e-10 72.4 157 37.6
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 3.6e-10 71.6 167 32.9
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 4.7e-10 71.2 388 27.6
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 6.2e-10 70.9 161 41.6
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 8.1e-10 70.5 188 34.6
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 8.1e-10 70.5 470 25.5
RcHm_v2.0_Chr5g0015161 Rosa chinensis HOM05D000004 ORTHO05D000002 1.1e-09 70.1 75 50.7
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 1.4e-09 69.7 161 36.0
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 1.4e-09 69.7 161 36.0
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 1.4e-09 69.7 161 36.0
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 1.4e-09 69.7 161 36.0
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 1.4e-09 69.7 161 36.0
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 1.4e-09 69.7 158 42.4
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.4e-09 69.7 440 22.5
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 2.4e-09 68.9 180 30.6
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 4.0e-09 68.2 247 31.6
MD07G1221100 Malus domestica HOM05D000004 ORTHO05D000002 5.2e-09 67.8 52 61.5
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 9.0e-09 67.0 481 26.6
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 1.2e-08 66.6 163 34.4
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 1.2e-08 66.6 590 24.7
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 1.5e-08 66.2 159 33.3
HanXRQChr10g0318501 Helianthus annuus HOM05D000004 ORTHO05D000002 1.5e-08 66.2 42 69.0
Oeu032296.1 Olea europaea HOM05D000348 ORTHO05D000244 1.5e-08 66.2 53 58.5
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 2.0e-08 65.9 141 41.8
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 2.0e-08 65.9 144 32.6
ECA246G1983 Erigeron canadensis HOM05D000006 ORTHO05D000002 2.0e-08 65.9 42 66.7
SHI00352 Sapria himalayana HOM05D000004 ORTHO05D000002 2.0e-08 65.9 53 56.6
SHI03109 Sapria himalayana HOM05D000004 ORTHO05D000002 2.0e-08 65.9 53 56.6
SHI08945 Sapria himalayana HOM05D000004 ORTHO05D000002 2.0e-08 65.9 53 56.6
SHI20505 Sapria himalayana HOM05D000004 ORTHO05D000002 2.0e-08 65.9 53 56.6
SHI47463 Sapria himalayana HOM05D000004 ORTHO05D000002 2.0e-08 65.9 53 56.6
SHI50759 Sapria himalayana HOM05D000004 ORTHO05D000002 2.0e-08 65.9 53 56.6
SHI51245 Sapria himalayana HOM05D000004 ORTHO05D000002 2.0e-08 65.9 53 56.6
SHI51648 Sapria himalayana HOM05D000004 ORTHO05D000002 2.0e-08 65.9 53 56.6
SHI51847 Sapria himalayana HOM05D000004 ORTHO05D000002 2.0e-08 65.9 53 56.6
SHI54655 Sapria himalayana HOM05D000004 ORTHO05D000002 2.0e-08 65.9 53 56.6
SHI54723 Sapria himalayana HOM05D000004 ORTHO05D000002 2.0e-08 65.9 53 56.6
SHI55032 Sapria himalayana HOM05D000004 ORTHO05D000002 2.0e-08 65.9 53 56.6
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 3.4e-08 65.1 461 23.2
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 3.4e-08 65.1 166 39.8
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 4.4e-08 64.7 42 66.7
ECA246G1685 Erigeron canadensis HOM05D000004 ORTHO05D000002 5.8e-08 64.3 42 64.3
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 5.8e-08 64.3 590 23.2
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 5.8e-08 64.3 97 40.2
SHI50854 Sapria himalayana HOM05D000004 ORTHO05D000002 5.8e-08 64.3 53 54.7
SHI51873 Sapria himalayana HOM05D000004 ORTHO05D000002 5.8e-08 64.3 53 54.7
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 5.8e-08 64.3 441 26.5
ECA233G5904 Erigeron canadensis HOM05D000004 ORTHO05D000002 9.9e-08 63.5 42 64.3
QL05p022806 Quercus lobata HOM05D000004 ORTHO05D000002 9.9e-08 63.5 113 33.6
SHI48626 Sapria himalayana HOM05D000004 ORTHO05D000002 9.9e-08 63.5 53 54.7
ECA236G4266 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.3e-07 63.2 76 44.7
ECA240G0089 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.3e-07 63.2 76 44.7
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 1.3e-07 63.2 134 35.1
ECA248G3755 Erigeron canadensis HOM05D000006 ORTHO05D000002 1.7e-07 62.8 49 57.1
Hma1.2p1_0007F.1_g005000 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 1.7e-07 62.8 53 54.7
Lj7A752T55 Lonicera japonica HOM05D005642 ORTHO05D006672 1.7e-07 62.8 98 42.9
QL01p015808 Quercus lobata HOM05D000004 ORTHO05D000002 1.7e-07 62.8 49 59.2
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 2.2e-07 62.4 419 25.5
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 2.2e-07 62.4 142 41.5
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 2.2e-07 62.4 145 39.3
ECA238G1029 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.9e-07 62.0 42 64.3
QL04p013037 Quercus lobata HOM05D000004 ORTHO05D000002 6.4e-07 60.8 49 57.1
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 6.4e-07 60.8 49 57.1
QL11p032775 Quercus lobata HOM05D000004 ORTHO05D000002 6.4e-07 60.8 49 57.1
SEGI_07284 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 6.4e-07 60.8 74 41.9
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 1.1e-06 60.1 161 32.3
ECA240G2139 Erigeron canadensis HOM05D000006 ORTHO05D000002 1.4e-06 59.7 42 61.9
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 1.9e-06 59.3 171 41.5
QL04p063674 Quercus lobata HOM05D000004 ORTHO05D000002 1.9e-06 59.3 49 55.1
QL09p002786 Quercus lobata HOM05D000004 ORTHO05D000002 1.9e-06 59.3 49 55.1
ECA238G2679 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.2e-06 58.5 42 59.5
ECA238G4528 Erigeron canadensis HOM05D000004 ORTHO05D000002 3.2e-06 58.5 44 54.5
CSS0022143 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 4.2e-06 58.2 44 54.5
FvH4_1g29103 Fragaria vesca HOM05D000004 ORTHO05D000002 4.2e-06 58.2 42 59.5
PGR072G0001 Punica granatum HOM05D000004 ORTHO05D000002 4.2e-06 58.2 79 32.9
CSS0030845 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 7.1e-06 57.4 53 49.1
CSS0043413 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 7.1e-06 57.4 44 54.5
Ca_27390_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 7.1e-06 57.4 82 32.9
FvH4_2g19253 Fragaria vesca HOM05D000004 ORTHO05D000002 7.1e-06 57.4 37 62.2
QL03p069728 Quercus lobata HOM05D000004 ORTHO05D000002 7.1e-06 57.4 49 53.1
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 9.3e-06 57.0 141 38.3
CSS0034640 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 9.3e-06 57.0 44 54.5
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 9.3e-06 57.0 145 42.1
ECA232G0013 Erigeron canadensis HOM05D000004 ORTHO05D000002 9.3e-06 57.0 53 45.3
FvH4_6g14992 Fragaria vesca HOM05D000004 ORTHO05D000002 9.3e-06 57.0 42 57.1
QL12p028861 Quercus lobata HOM05D000004 ORTHO05D000002 9.3e-06 57.0 55 49.1


User provided reference genes

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