Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0056700 Rhododendron simsii HOM05D001937 ORTHO05D007024 0.0e+00 3437.1 1740 100.0
CSS0034620 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2281.5 1263 89.2
CSS0040995 Camellia sinensis var. sinensis HOM05D001937 ORTHO05D007024 0.0e+00 2277.7 1263 89.1
Manes.11G123000 Manihot esculenta HOM05D001937 ORTHO05D007024 0.0e+00 2245.7 1264 86.8
Lj1P823T23 Lonicera japonica HOM05D001937 ORTHO05D007024 0.0e+00 2241.8 1264 87.9
Haze_10549 Corylus avellana HOM05D001937 ORTHO05D007024 0.0e+00 2241.1 1263 87.2
Hma1.2p1_0587F.1_g184190 Hydrangea macrophylla HOM05D001937 ORTHO05D007024 0.0e+00 2238.8 1263 86.9
Atru.chr12.1853 Acer truncatum HOM05D001937 ORTHO05D007024 0.0e+00 2233.4 1263 87.2
Actinidia06125 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2231.4 1240 88.9
QL11p024047 Quercus lobata HOM05D001937 ORTHO05D007024 0.0e+00 2231.4 1263 86.9
Cfa005699 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 2230.7 1263 86.9
COL.COLO4_33143 Corchorus olitorius HOM05D001937 ORTHO05D007024 0.0e+00 2223.0 1263 86.1
Gorai.005G213100 Gossypium raimondii HOM05D001937 ORTHO05D007024 0.0e+00 2220.7 1263 86.2
Gohir.A03G167300 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2218.4 1263 86.2
Sabra04G0061200 Salix brachista HOM05D001937 ORTHO05D007024 0.0e+00 2218.4 1257 86.6
Duzib132G1189 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2216.0 1263 85.7
Gohir.D02G190400 Gossypium hirsutum HOM05D001937 ORTHO05D007024 0.0e+00 2216.0 1263 85.9
CiPaw.10G131100 Carya illinoinensis HOM05D001937 ORTHO05D007024 0.0e+00 2215.7 1263 86.4
Thecc.02G153900 Theobroma cacao HOM05D001937 ORTHO05D007024 0.0e+00 2214.1 1263 85.7
Ciclev10018533m.g Citrus clementina HOM05D001937 ORTHO05D007024 0.0e+00 2213.0 1263 86.2
Potri.004G091000 Populus trichocarpa HOM05D001937 ORTHO05D007024 0.0e+00 2211.4 1257 86.3
TWI12G0886 Tripterygium wilfordii HOM05D001937 ORTHO05D007024 0.0e+00 2205.6 1263 85.3
Prupe.2G098100 Prunus persica HOM05D001937 ORTHO05D007024 0.0e+00 2199.1 1263 85.6
Duzib248G1173 Durio zibethinus HOM05D001937 ORTHO05D007024 0.0e+00 2198.7 1263 85.2
THA.LOC104823845 Tarenaya hassleriana HOM05D001937 ORTHO05D007024 0.0e+00 2191.8 1263 84.6
Sc14g0006180 Simmondsia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2188.7 1266 84.7
MD07G1077100 Malus domestica HOM05D001937 ORTHO05D007024 0.0e+00 2188.3 1263 85.1
Nitab4.5_0000761g0030 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 2186.0 1264 84.6
Aa31LG9G17330 Aethionema arabicum HOM05D001937 ORTHO05D007024 0.0e+00 2185.6 1263 84.0
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2184.8 1357 79.9
AUR62008924 Chenopodium quinoa HOM05D001937 ORTHO05D007024 0.0e+00 2184.8 1263 84.2
Eucgr.I01066 Eucalyptus grandis HOM05D001937 ORTHO05D007024 0.0e+00 2184.1 1263 84.4
Cpa.g.sc41.77 Carica papaya HOM05D001937 ORTHO05D007024 0.0e+00 2182.9 1263 85.1
Sopen09g005280 Solanum pennellii HOM05D001937 ORTHO05D007024 0.0e+00 2181.8 1263 84.3
Solyc09g010560.3 Solanum lycopersicum HOM05D001937 ORTHO05D007024 0.0e+00 2180.6 1263 84.3
EL10Ac7g17851 Beta vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2179.8 1263 84.6
CAN.G97.40 Capsicum annuum HOM05D001937 ORTHO05D007024 0.0e+00 2178.3 1266 84.1
Cc09_g08410 Coffea canephora HOM05D001937 ORTHO05D007024 0.0e+00 2177.1 1263 85.1
Dinv02213 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 2176.7 1209 88.5
RcHm_v2.0_Chr1g0337071 Rosa chinensis HOM05D001937 ORTHO05D007024 0.0e+00 2176.0 1263 84.9
Sp7g04200 Schrenkiella parvula HOM05D001937 ORTHO05D007024 0.0e+00 2175.6 1263 83.6
PGSC0003DMG400008847 Solanum tuberosum HOM05D001937 ORTHO05D007024 0.0e+00 2173.3 1263 84.0
FvH4_7g07120 Fragaria vesca HOM05D001937 ORTHO05D007024 0.0e+00 2172.5 1263 84.7
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2170.6 1263 84.6
Ah.08g214380 Amaranthus hybridus HOM05D001937 ORTHO05D007024 0.0e+00 2168.7 1265 83.3
Aqoxy4G02972 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2168.7 1264 84.5
FAN06G4695 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2167.1 1263 84.6
Thhalv10027622m.g Eutrema salsugineum HOM05D001937 ORTHO05D007024 0.0e+00 2165.6 1263 83.9
CARHR214920 Cardamine hirsuta HOM05D001937 ORTHO05D007024 0.0e+00 2164.0 1263 83.7
AL7G46730 Arabidopsis lyrata HOM05D001937 ORTHO05D007024 0.0e+00 2162.9 1263 83.5
BraA07t29656Z Brassica rapa HOM05D001937 ORTHO05D007024 0.0e+00 2162.9 1263 83.4
A07p19500 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2162.5 1263 83.4
FAN03G1993 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2162.5 1263 84.2
Migut.N00430 Erythranthe guttata HOM05D001937 ORTHO05D007024 0.0e+00 2162.1 1264 83.6
Aqoxy2G01413 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 2161.0 1264 84.2
BolC6t36984H Brassica oleracea HOM05D001937 ORTHO05D007024 0.0e+00 2160.2 1263 83.1
Carub.0007s3301 Capsella rubella HOM05D001937 ORTHO05D007024 0.0e+00 2160.2 1263 83.5
SalBow1G8218 Salvia bowleyana HOM05D001937 ORTHO05D007024 0.0e+00 2160.2 1263 83.8
Lj4g0006057 Lotus japonicus HOM05D001937 ORTHO05D007024 0.0e+00 2159.0 1264 83.5
C06p17940 Brassica napus HOM05D001937 ORTHO05D007024 0.0e+00 2157.1 1263 83.0
MELO3C021250.2 Cucumis melo HOM05D001937 ORTHO05D007024 0.0e+00 2152.1 1291 82.3
PSO017G7212 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2150.9 1264 83.3
AT5G37830 Arabidopsis thaliana HOM05D001937 ORTHO05D007024 0.0e+00 2149.8 1263 83.1
MSTRG.3701 Avicennia marina HOM05D001937 ORTHO05D007024 0.0e+00 2147.9 1263 83.2
PSO478G1455 Papaver somniferum HOM05D001937 ORTHO05D007024 0.0e+00 2147.9 1264 83.2
MBI05_g10862_MAGBIO Magnolia biondii HOM05D001937 ORTHO05D007024 0.0e+00 2146.3 1268 83.8
DCAR_003140 Daucus carota HOM05D001937 ORTHO05D007024 0.0e+00 2145.5 1263 83.6
CsaV3_6G000030 Cucumis sativus L. HOM05D001937 ORTHO05D007024 0.0e+00 2144.4 1263 83.5
ECA233G4596 Erigeron canadensis HOM05D001937 ORTHO05D007024 0.0e+00 2144.4 1271 82.6
HanXRQChr10g0312981 Helianthus annuus HOM05D001937 ORTHO05D007024 0.0e+00 2143.2 1264 83.2
Medtr4g093870 Medicago truncatula HOM05D001937 ORTHO05D007024 0.0e+00 2142.9 1264 83.3
Ca_18373_v3 Cicer arietinum L. HOM05D001937 ORTHO05D007024 0.0e+00 2139.4 1265 82.9
Glyma.08G069400 Glycine max HOM05D001937 ORTHO05D007024 0.0e+00 2136.3 1264 82.9
Phvul.002G211700 Phaseolus vulgaris HOM05D001937 ORTHO05D007024 0.0e+00 2136.3 1263 83.1
Nn2g12806 Nelumbo nucifera HOM05D001937 ORTHO05D007024 0.0e+00 2135.1 1250 84.0
Lsat_1_v5_gn_6_11080 Lactuca sativa HOM05D001937 ORTHO05D007024 0.0e+00 2134.4 1266 82.6
VMungo0251G0821 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 2134.4 1264 83.0
BcaB02g08024 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 2133.2 1263 82.3
CANSAT01G0692 Cannabis sativa HOM05D001937 ORTHO05D007024 0.0e+00 2131.7 1263 83.0
ClCG05G003000 Citrullus lanatus HOM05D001937 ORTHO05D007024 0.0e+00 2131.7 1252 83.4
FAN01G0178 Fragaria x ananassa HOM05D001937 ORTHO05D007024 0.0e+00 2130.5 1263 83.5
arahy.Tifrunner.gnm1.ann1.EYG9NG Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 2128.6 1272 82.6
Sed0024188 Sechium edule HOM05D001937 ORTHO05D007024 0.0e+00 2116.3 1263 81.9
PGR142G3997 Punica granatum HOM05D001937 ORTHO05D007024 0.0e+00 2101.2 1271 81.9
TPR.G2837 Trifolium pratense HOM05D001937 ORTHO05D007024 0.0e+00 2095.5 1264 82.3
unitig_0.g658 Utricularia gibba HOM05D001937 ORTHO05D007024 0.0e+00 2080.8 1264 81.2
Zm00001eb021240 Zea mays HOM05D001937 ORTHO05D007024 0.0e+00 2077.8 1264 79.8
Lalb_Chr05g0217681 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 2071.6 1264 80.8
arahy.Tifrunner.gnm1.ann1.TT5FZ7 Arachis hypogaea HOM05D001937 ORTHO05D007024 0.0e+00 2062.3 1266 78.9
ATR0559G108 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 2048.1 1265 80.8
Peaxi162Scf00165g01826 Petunia axillaris HOM05D001937 ORTHO05D007024 0.0e+00 2045.4 1263 80.4
Os01g0966000 Oryza sativa ssp. japonica HOM05D001937 ORTHO05D007024 0.0e+00 2044.2 1264 79.5
ATR0559G369 Amborella trichopoda HOM05D001937 ORTHO05D007024 0.0e+00 1991.1 1264 78.6
Aqoxy2G01407 Aquilegia oxysepala HOM05D001937 ORTHO05D007024 0.0e+00 1984.9 1162 84.4
SEGI_01532 Sequoiadendron giganteum HOM05D001937 ORTHO05D007024 0.0e+00 1943.7 1263 76.1
SHI12658 Sapria himalayana HOM05D001937 ORTHO05D007024 0.0e+00 1929.5 1267 75.1
CDE04G1916 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1892.9 1267 74.4
Mapoly0035s0055 Marchantia polymorpha HOM05D001937 ORTHO05D007024 0.0e+00 1859.0 1267 71.9
AagrBONN_evm.TU.Sc2ySwM_368.2008 Anthoceros agrestis HOM05D001937 ORTHO05D007024 0.0e+00 1848.2 1246 73.5
CDE07G0097 Ceratophyllum demersum HOM05D001937 ORTHO05D007024 0.0e+00 1845.1 1187 77.3
BcaC08g44352 Brassica carinata HOM05D001937 ORTHO05D007024 0.0e+00 1842.4 1065 83.6
Actinidia11252 Actinidia chinensis HOM05D001937 ORTHO05D007024 0.0e+00 1838.2 1264 74.8
Psat7g100640 Pisum sativum HOM05D001937 ORTHO05D007024 0.0e+00 1827.8 1090 82.7
SGA_v2.0_scaffold14G07136 Striga asiatica HOM05D001937 ORTHO05D007024 0.0e+00 1820.1 1131 80.5
SMO147G0274 Selaginella moellendorffii HOM05D001937 ORTHO05D007024 0.0e+00 1813.1 1264 71.1
Nitab4.5_0004091g0060 Nicotiana tabacum HOM05D001937 ORTHO05D007024 0.0e+00 1781.1 1264 72.0
Lalb_Chr16g0382831 Lupinus albus HOM05D001937 ORTHO05D007024 0.0e+00 1627.1 959 81.9
Pp3c19_22940 Physcomitrium patens HOM05D001937 ORTHO05D007024 0.0e+00 1541.6 1043 72.9
MCO14G182 Micromonas commoda HOM05D001937 ORTHO05D007024 0.0e+00 1527.7 1317 60.5
Oeu029564.1 Olea europaea HOM05D001937 ORTHO05D007024 0.0e+00 1408.7 809 84.7
GSVIVG01034203001 Vitis vinifera HOM05D001937 ORTHO05D007024 0.0e+00 1371.7 1263 60.5
Cfa025426 Carpinus fangiana HOM05D001937 ORTHO05D007024 0.0e+00 1327.0 1332 53.5
Cre07.g325748 Chlamydomonas reinhardtii HOM05D001937 ORTHO05D007024 0.0e+00 1288.5 1390 51.8
TAR636G0878 Trochodendron aralioides HOM05D001937 ORTHO05D007024 0.0e+00 1282.3 726 85.8
VMungo0251G0025 Vigna mungo HOM05D001937 ORTHO05D007024 0.0e+00 1168.3 1043 61.6
Dinv02208 Davidia involucrata HOM05D001937 ORTHO05D007024 0.0e+00 1160.2 811 73.7
Dinv10935 Davidia involucrata HOM05D001937 ORTHO05D007024 8.5e-268 928.3 566 81.6
TAR636G1691 Trochodendron aralioides HOM05D001937 ORTHO05D007024 1.5e-259 901.0 502 87.8
PRCOL_00004137 Prasinoderma coloniale HOM05D001937 ORTHO05D007024 1.7e-255 887.5 1244 41.2
CBR_g26054 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-217 761.1 650 59.7
MD02G1239500 Malus domestica HOM05D001937 ORTHO05D007024 7.1e-214 749.2 523 72.7
TAR636G2433 Trochodendron aralioides HOM05D001937 ORTHO05D007024 7.1e-206 722.6 452 80.1
TAR636G1243 Trochodendron aralioides HOM05D001937 ORTHO05D007024 1.2e-189 668.7 389 85.3
CBR_g26059 Chara braunii HOM05D001937 ORTHO05D007024 3.7e-130 471.1 359 68.2
Potri.017G124400 Populus trichocarpa HOM05D001937 ORTHO05D007024 3.0e-119 434.9 306 73.9
Lalb_Chr16g0382841 Lupinus albus HOM05D001937 ORTHO05D007024 4.7e-109 401.0 270 77.4
Rhsim05G0189700 Rhododendron simsii HOM05D003174 ORTHO05D003439 1.7e-95 355.9 359 59.6
Oeu061583.3 Olea europaea HOM05D001937 ORTHO05D007024 7.1e-81 307.4 480 42.5
SalBow2G0807 Salvia bowleyana HOM05D001937 ORTHO05D007024 1.8e-71 276.2 170 79.4
SalBow1G2752 Salvia bowleyana HOM05D001937 ORTHO05D007024 5.7e-70 271.2 170 78.8
SalBow1G1280 Salvia bowleyana HOM05D001937 ORTHO05D007024 4.8e-69 268.1 170 77.6
HPP92_019823 Vanilla planifolia HOM05D001937 ORTHO05D007024 1.0e-63 250.4 138 90.6
ECA234G0635 Erigeron canadensis HOM05D001937 ORTHO05D007024 2.8e-61 242.3 234 56.4
TAR636G3286 Trochodendron aralioides HOM05D001937 ORTHO05D043971 2.6e-46 192.6 111 82.0
vmacro08698 Vaccinium macrocarpon HOM05D003174 ORTHO05D003439 2.2e-45 189.5 331 40.5
HPP92_019822 Vanilla planifolia HOM05D001937 ORTHO05D007024 1.7e-42 179.9 153 65.4
TAR636G2347 Trochodendron aralioides HOM05D001937 ORTHO05D007024 2.7e-40 172.6 91 90.1
ECA234G4540 Erigeron canadensis HOM05D016619 ORTHO05D007024 3.3e-38 165.6 182 53.8
CBR_g39219 Chara braunii HOM05D001937 ORTHO05D043971 1.8e-28 133.3 94 66.0
HPP92_019824 Vanilla planifolia HOM05D001937 ORTHO05D007024 1.0e-26 127.5 104 62.5
CSS0007124 Camellia sinensis var. sinensis HOM05D003174 ORTHO05D003439 5.0e-26 125.2 165 44.8
Actinidia11253 Actinidia chinensis HOM05D003174 ORTHO05D003439 4.5e-19 102.1 178 38.8
Dinv35623 Davidia involucrata HOM05D003174 ORTHO05D003439 2.1e-16 93.2 159 37.1
vmacro20133 Vaccinium macrocarpon HOM05D003174 ORTHO05D003439 2.0e-14 86.7 231 35.1
Manes.08G078100 Manihot esculenta HOM05D003174 ORTHO05D003439 1.1e-09 70.9 162 33.3
GSVIVG01034205001 Vitis vinifera HOM05D003174 ORTHO05D003439 1.9e-09 70.1 378 25.9
Cfa017411 Carpinus fangiana HOM05D003174 ORTHO05D003439 2.1e-08 66.6 156 28.8
QL07p031124 Quercus lobata HOM05D003174 ORTHO05D003439 1.1e-07 64.3 150 31.3
QL07p047847 Quercus lobata HOM05D003174 ORTHO05D003439 1.1e-07 64.3 150 31.3
Dinv22692 Davidia involucrata HOM05D003174 ORTHO05D003439 1.8e-07 63.5 125 32.0
Sed0000072 Sechium edule HOM05D003174 ORTHO05D003439 3.1e-07 62.8 126 31.7
Haze_20757 Corylus avellana HOM05D003174 ORTHO05D003439 4.0e-07 62.4 156 28.2
TAR623G0639 Trochodendron aralioides HOM05D003174 ORTHO05D003439 6.8e-07 61.6 139 31.7
Hma1.2p1_0324F.1_g125650 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 1.2e-06 60.8 127 30.7
Hma1.2p1_3259F.1_g334646 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 1.2e-06 60.8 127 30.7
arahy.Tifrunner.gnm1.ann1.FD13B1 Arachis hypogaea HOM05D003174 ORTHO05D003439 2.0e-06 60.1 124 29.0
MSTRG.924 Avicennia marina HOM05D003174 ORTHO05D003439 3.4e-06 59.3 126 31.7
TAR629G3457 Trochodendron aralioides HOM05D003174 ORTHO05D003439 4.4e-06 58.9 139 29.5
GSVIVG01013578001 Vitis vinifera HOM05D003174 ORTHO05D003439 5.8e-06 58.5 124 29.8
arahy.Tifrunner.gnm1.ann1.Y7W1NJ Arachis hypogaea HOM05D003174 ORTHO05D003439 7.5e-06 58.2 173 27.2
CsaV3_4G024810 Cucumis sativus L. HOM05D003174 ORTHO05D003439 7.5e-06 58.2 179 28.5
Actinidia35877 Actinidia chinensis HOM05D003174 ORTHO05D003439 9.8e-06 57.8 117 28.2
Lj1g0011268 Lotus japonicus HOM05D003174 ORTHO05D003439 9.8e-06 57.8 123 26.8
Thecc.05G042400 Theobroma cacao HOM05D003174 ORTHO05D003439 9.8e-06 57.8 159 28.9


User provided reference genes

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