Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0055700 Rhododendron simsii HOM05D000595 ORTHO05D008454 0.0e+00 1192.2 594 100.0
vmacro00479 Vaccinium macrocarpon HOM05D000595 ORTHO05D008454 2.9e-207 725.7 656 62.5
Dinv29591 Davidia involucrata HOM05D000595 ORTHO05D008454 1.3e-204 716.8 594 64.0
CSS0010328 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D008454 5.6e-203 711.4 529 68.2
Lj6C558G7 Lonicera japonica HOM05D000595 ORTHO05D008454 5.2e-193 678.3 520 66.7
TAR636G3484 Trochodendron aralioides HOM05D000595 ORTHO05D008454 6.9e-193 677.9 594 61.3
Nn1g07860 Nelumbo nucifera HOM05D000595 ORTHO05D008454 2.2e-191 672.9 580 60.5
RcHm_v2.0_Chr4g0415411 Rosa chinensis HOM05D000595 ORTHO05D008454 2.3e-188 662.9 594 60.3
Prupe.1G006900 Prunus persica HOM05D000595 ORTHO05D008454 3.9e-188 662.1 592 59.6
MD04G1008200 Malus domestica HOM05D000595 ORTHO05D008454 5.6e-187 658.3 595 59.7
Aqoxy2G03878 Aquilegia oxysepala HOM05D000595 ORTHO05D008454 1.5e-184 650.2 520 64.0
Atru.chr4.1710 Acer truncatum HOM05D000595 ORTHO05D008454 4.5e-184 648.7 593 59.2
PSO017G5401 Papaver somniferum HOM05D000595 ORTHO05D008454 7.6e-184 647.9 591 58.7
Sc13g0000130 Simmondsia chinensis HOM05D000595 ORTHO05D008454 1.7e-183 646.7 594 59.1
Cc03_g07770 Coffea canephora HOM05D000595 ORTHO05D008454 2.9e-183 646.0 593 58.5
PGR083G2732 Punica granatum HOM05D000595 ORTHO05D008454 1.9e-182 643.3 592 58.1
PSO063G0672 Papaver somniferum HOM05D000595 ORTHO05D008454 3.2e-182 642.5 583 58.8
VMungo0540G0041 Vigna mungo HOM05D000595 ORTHO05D001274 1.6e-181 640.2 566 58.1
Thecc.04G204800 Theobroma cacao HOM05D000595 ORTHO05D008454 3.5e-181 639.0 595 58.5
HanXRQChr07g0185731 Helianthus annuus HOM05D000595 ORTHO05D008454 6.0e-181 638.3 566 59.5
Nitab4.5_0000676g0200 Nicotiana tabacum HOM05D000595 ORTHO05D008454 6.0e-181 638.3 595 58.5
Lj6g0010121 Lotus japonicus HOM05D000595 ORTHO05D008454 1.0e-180 637.5 590 58.6
FvH4_4g15840 Fragaria vesca HOM05D000595 ORTHO05D008454 3.0e-180 636.0 595 58.3
Glyma.15G133500 Glycine max HOM05D000595 ORTHO05D008454 3.0e-180 636.0 576 58.7
Psat1g165160 Pisum sativum HOM05D000595 ORTHO05D008454 6.7e-180 634.8 576 57.8
TWI53G1083 Tripterygium wilfordii HOM05D000595 ORTHO05D008454 2.5e-179 632.9 594 57.2
Solyc12g098360.2 Solanum lycopersicum HOM05D000595 ORTHO05D008454 4.3e-179 632.1 589 58.4
Nitab4.5_0000850g0080 Nicotiana tabacum HOM05D000595 ORTHO05D008454 7.4e-179 631.3 605 57.7
arahy.Tifrunner.gnm1.ann1.897VZR Arachis hypogaea HOM05D000595 ORTHO05D008454 1.3e-178 630.6 573 58.3
Duzib151G0403 Durio zibethinus HOM05D000595 ORTHO05D008454 1.3e-178 630.6 595 58.0
TPR.G22264 Trifolium pratense HOM05D000595 ORTHO05D008454 1.6e-178 630.2 563 58.4
Actinidia37010 Actinidia chinensis HOM05D000595 ORTHO05D008454 2.1e-178 629.8 506 66.4
Peaxi162Scf00652g00421 Petunia axillaris HOM05D000595 ORTHO05D008454 2.1e-178 629.8 599 57.6
Sopen12g033140 Solanum pennellii HOM05D000595 ORTHO05D008454 2.1e-178 629.8 589 58.1
arahy.Tifrunner.gnm1.ann1.G7HRZN Arachis hypogaea HOM05D000595 ORTHO05D008454 2.8e-178 629.4 573 58.3
Phvul.006G125200 Phaseolus vulgaris HOM05D000595 ORTHO05D008454 4.8e-178 628.6 566 58.8
Sed0004774 Sechium edule HOM05D000595 ORTHO05D008454 4.8e-178 628.6 595 58.0
Gorai.011G158900 Gossypium raimondii HOM05D000595 ORTHO05D008454 6.2e-178 628.2 592 57.8
Nitab4.5_0005206g0070 Nicotiana tabacum HOM05D000595 ORTHO05D008454 8.1e-178 627.9 614 56.8
Ca_00886_v3 Cicer arietinum L. HOM05D000595 ORTHO05D001274 1.1e-177 627.5 520 61.7
CsaV3_1G042950 Cucumis sativus L. HOM05D000595 ORTHO05D008454 1.5e-176 623.6 595 57.5
Potri.001G314700 Populus trichocarpa HOM05D000595 ORTHO05D008454 3.4e-176 622.5 594 56.1
Migut.N00379 Erythranthe guttata HOM05D000595 ORTHO05D008454 1.7e-175 620.2 596 56.5
Eucgr.H02785 Eucalyptus grandis HOM05D000595 ORTHO05D008454 2.2e-175 619.8 589 57.0
FAN12G2005 Fragaria x ananassa HOM05D000595 ORTHO05D008454 7.1e-174 614.8 567 58.4
CAN.G767.41 Capsicum annuum HOM05D000595 ORTHO05D008454 1.6e-173 613.6 590 57.5
Lalb_Chr15g0088911 Lupinus albus HOM05D000595 ORTHO05D008454 3.0e-172 609.4 566 56.9
ClCG05G003330 Citrullus lanatus HOM05D000595 ORTHO05D008454 1.3e-170 604.0 572 57.5
Carub.0001s0414 Capsella rubella HOM05D000595 ORTHO05D008454 6.2e-170 601.7 598 55.0
THA.LOC104801033 Tarenaya hassleriana HOM05D000595 ORTHO05D008454 3.1e-169 599.4 565 56.3
Thhalv10007628m.g Eutrema salsugineum HOM05D000595 ORTHO05D008454 2.0e-168 596.7 594 54.5
Sabra16G0199100 Salix brachista HOM05D000595 ORTHO05D008454 4.5e-168 595.5 622 53.1
A10p03330 Brassica napus HOM05D000595 ORTHO05D008454 5.8e-168 595.1 595 54.8
BraA10t42609Z Brassica rapa HOM05D000595 ORTHO05D008454 5.8e-168 595.1 595 54.8
MELO3C015176.2 Cucumis melo HOM05D000595 ORTHO05D008454 1.3e-167 594.0 621 54.1
AL1G14620 Arabidopsis lyrata HOM05D000595 ORTHO05D008454 6.5e-167 591.7 565 55.8
AT1G04900 Arabidopsis thaliana HOM05D000595 ORTHO05D008454 8.4e-167 591.3 565 55.8
BolC5t29087H Brassica oleracea HOM05D000595 ORTHO05D008454 2.5e-166 589.7 595 54.6
ECA233G5324 Erigeron canadensis HOM05D000595 ORTHO05D008454 1.2e-165 587.4 463 64.6
C05p03050 Brassica napus HOM05D000595 ORTHO05D008454 1.6e-165 587.0 521 58.7
Gohir.A10G123700 Gossypium hirsutum HOM05D000595 ORTHO05D008454 1.0e-164 584.3 595 54.6
Aa31LG1G19900 Aethionema arabicum HOM05D000595 ORTHO05D008454 1.3e-164 583.9 521 57.6
Os01g0911900 Oryza sativa ssp. japonica HOM05D000595 ORTHO05D008454 6.3e-162 575.1 521 56.8
ATR1145G018 Amborella trichopoda HOM05D000595 ORTHO05D008454 2.4e-161 573.2 518 57.5
Ciclev10005247m.g Citrus clementina HOM05D000595 ORTHO05D008454 6.9e-161 571.6 460 63.0
COL.COLO4_09879 Corchorus olitorius HOM05D000595 ORTHO05D008454 4.2e-158 562.4 468 62.4
Gohir.D10G142300 Gossypium hirsutum HOM05D000595 ORTHO05D008454 9.3e-158 561.2 457 62.6
EL10Ac3g07487 Beta vulgaris HOM05D000595 ORTHO05D008454 2.1e-157 560.1 522 57.3
Lsat_1_v5_gn_6_60501 Lactuca sativa HOM05D000595 ORTHO05D008454 1.0e-156 557.8 540 55.9
HPP92_008949 Vanilla planifolia HOM05D000595 ORTHO05D008454 1.3e-156 557.4 562 53.4
Ah.13g078130 Amaranthus hybridus HOM05D000595 ORTHO05D008454 4.3e-155 552.4 521 57.0
FAN07G1333 Fragaria x ananassa HOM05D000595 ORTHO05D008454 4.3e-155 552.4 595 54.3
CARHR004300 Cardamine hirsuta HOM05D000595 ORTHO05D008454 5.3e-153 545.4 598 51.7
Haze_11606 Corylus avellana HOM05D000595 ORTHO05D008454 4.2e-150 535.8 541 55.6
FAN19G1967 Fragaria x ananassa HOM05D000595 ORTHO05D008454 4.2e-150 535.8 595 53.3
DCAR_002262 Daucus carota HOM05D000595 ORTHO05D008454 6.7e-148 528.5 460 60.2
QL06p024408 Quercus lobata HOM05D000595 ORTHO05D008454 3.3e-147 526.2 370 71.4
GSVIVG01000528001 Vitis vinifera HOM05D000595 ORTHO05D008454 1.5e-144 517.3 511 56.0
Lj6A570G15 Lonicera japonica HOM05D000595 ORTHO05D008454 1.0e-140 504.6 512 55.5
SGA_v2.0_scaffold216G42389 Striga asiatica HOM05D000595 ORTHO05D008454 5.3e-137 492.3 425 60.2
AUR62020816 Chenopodium quinoa HOM05D000595 ORTHO05D008454 1.0e-135 488.0 467 55.0
Medtr2g031240 Medicago truncatula HOM05D000595 ORTHO05D008454 4.2e-134 482.6 479 53.9
Manes.15G053200 Manihot esculenta HOM05D000595 ORTHO05D008454 4.0e-132 476.1 491 54.0
Sp1g03740 Schrenkiella parvula HOM05D000595 ORTHO05D008454 4.1e-129 466.1 475 53.3
CiPaw.01G121900 Carya illinoinensis HOM05D000595 ORTHO05D008454 1.8e-124 450.7 337 68.0
unitig_744.g24024 Utricularia gibba HOM05D000595 ORTHO05D008454 5.5e-118 429.1 341 62.5
AUR62032918 Chenopodium quinoa HOM05D000595 ORTHO05D008454 1.7e-106 391.0 467 47.8
Cpa.g.sc59.134 Carica papaya HOM05D000595 ORTHO05D008454 6.6e-103 379.0 242 76.4
Mapoly0090s0077 Marchantia polymorpha HOM05D000595 ORTHO05D008454 1.8e-100 370.9 522 41.4
Pp3c9_4240 Physcomitrium patens HOM05D000595 ORTHO05D008454 1.1e-97 361.7 515 38.4
SMO367G0911 Selaginella moellendorffii HOM05D000595 ORTHO05D008454 3.2e-97 360.1 516 38.6
AagrBONN_evm.TU.Sc2ySwM_344.3272 Anthoceros agrestis HOM05D000595 ORTHO05D008454 1.9e-94 350.9 515 39.8
SEGI_10928 Sequoiadendron giganteum HOM05D000595 ORTHO05D008454 4.0e-84 316.6 238 65.1
FvH4_1g23291 Fragaria vesca HOM05D000595 ORTHO05D008454 6.8e-84 315.8 212 74.5
Zm00001eb143660 Zea mays HOM05D000595 ORTHO05D008454 2.4e-76 290.8 306 51.3
Actinidia33191 Actinidia chinensis HOM05D000595 ORTHO05D008454 2.4e-65 254.2 292 53.4
FAN17G1124 Fragaria x ananassa HOM05D000595 ORTHO05D008454 1.1e-57 228.8 134 85.1
MCO01G355 Micromonas commoda HOM05D000595 ORTHO05D008454 1.9e-54 218.0 529 32.5
Oeu016734.1 Olea europaea HOM05D000595 ORTHO05D008454 1.4e-52 211.8 227 50.2
CiPaw.01G121800 Carya illinoinensis HOM05D000595 ORTHO05D008454 6.5e-50 203.0 259 46.3
PRCOL_00005088 Prasinoderma coloniale HOM05D000595 ORTHO05D008454 1.0e-47 195.7 477 30.0
Cre13.g584700 Chlamydomonas reinhardtii HOM05D000595 ORTHO05D008454 2.6e-35 154.5 465 26.9
GSVIVG01000526001 Vitis vinifera HOM05D000595 ORTHO05D008454 3.8e-34 150.6 96 76.0
QL06p024418 Quercus lobata HOM05D000595 ORTHO05D008454 1.4e-33 148.7 166 51.2
CsaV3_6G039270 Cucumis sativus L. HOM05D000595 ORTHO05D008454 2.8e-29 134.4 132 54.5
Cfa022406 Carpinus fangiana HOM05D000595 ORTHO05D008454 3.1e-28 131.0 540 24.8
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 3.8e-26 124.0 125 49.6
CBR_g19088 Chara braunii HOM05D000019 ORTHO05D000048 6.5e-26 123.2 225 33.3
EL10Ac4g09027 Beta vulgaris HOM05D000595 ORTHO05D008454 1.0e-23 115.9 160 41.9
Nn1g07859 Nelumbo nucifera HOM05D000595 ORTHO05D008454 1.4e-20 105.5 91 61.5
CsaV3_6G039250 Cucumis sativus L. HOM05D000595 ORTHO05D008454 5.9e-19 100.1 116 48.3
SEGI_41312 Sequoiadendron giganteum HOM05D000595 ORTHO05D008454 1.4e-15 89.0 49 73.5
unitig_744.g24023 Utricularia gibba HOM05D000595 ORTHO05D008454 1.8e-15 88.6 60 68.3
CDE09G0179 Ceratophyllum demersum HOM05D000595 ORTHO05D008454 3.0e-15 87.8 72 56.9
AUR62032919 Chenopodium quinoa HOM05D000595 ORTHO05D008454 3.3e-14 84.3 45 84.4
Aqoxy3G00773 Aquilegia oxysepala HOM05D000595 ORTHO05D008454 2.4e-12 78.2 40 80.0
Actinidia33192 Actinidia chinensis HOM05D000595 ORTHO05D008454 6.8e-07 60.1 35 77.1
Aqoxy3G00774 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 6.8e-07 60.1 79 49.4
A03p03910 Brassica napus HOM05D036078 ORTHO05D008454 2.0e-06 58.5 37 75.7
C03p02090 Brassica napus HOM05D036078 ORTHO05D008454 2.0e-06 58.5 37 75.7
SEGI_06009 Sequoiadendron giganteum HOM05D000595 ORTHO05D008454 3.4e-06 57.8 37 70.3


User provided reference genes

Program Settings