Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 0.0e+00 1079.7 571 100.0
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 1.0e-140 504.6 309 87.4
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 4.6e-138 495.7 339 77.0
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.2e-133 481.1 339 75.5
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 2.4e-126 456.8 339 71.4
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 9.1e-126 454.9 340 72.6
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 4.8e-111 406.0 337 63.5
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 3.2e-107 393.3 306 68.6
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 9.4e-107 391.7 341 60.4
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 9.1e-102 375.2 341 58.4
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 1.9e-99 367.5 340 59.4
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.5e-99 367.1 341 57.2
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 2.5e-99 367.1 337 58.2
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 3.2e-99 366.7 337 60.5
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 1.6e-98 364.4 337 58.2
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 1.4e-97 361.3 337 58.2
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 3.0e-97 360.1 346 57.8
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.0e-96 357.5 341 58.4
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 3.4e-96 356.7 337 58.2
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 5.7e-96 355.9 341 56.3
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 9.8e-96 355.1 341 58.1
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 9.8e-96 355.1 337 57.3
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 1.3e-95 354.8 338 57.7
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.8e-95 353.6 337 56.7
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 3.7e-95 353.2 340 57.9
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 5.4e-94 349.4 338 57.1
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 9.2e-94 348.6 337 56.4
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 4.5e-93 346.3 341 56.6
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 7.7e-93 345.5 340 56.2
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 1.0e-92 345.1 342 55.8
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 1.0e-92 345.1 343 54.8
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.3e-92 344.7 337 54.9
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.9e-92 343.6 337 54.3
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.9e-92 343.6 337 54.6
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 3.8e-92 343.2 336 55.1
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 3.8e-92 343.2 337 56.1
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 3.8e-92 343.2 337 56.1
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.9e-91 340.9 337 54.6
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 1.9e-91 340.9 337 55.2
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 2.5e-91 340.5 337 54.3
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.6e-91 339.3 337 54.3
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 9.5e-91 338.6 342 55.3
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 1.2e-90 338.2 340 56.2
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 1.0e-89 335.1 338 54.4
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.0e-89 335.1 338 55.9
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 1.8e-89 334.3 340 55.3
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 2.3e-89 334.0 337 55.5
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 3.0e-89 333.6 340 55.6
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 8.9e-89 332.0 339 57.5
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 2.6e-88 330.5 308 56.8
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.6e-88 330.5 382 51.6
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 2.6e-88 330.5 340 56.5
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 4.4e-88 329.7 340 53.2
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 7.5e-88 328.9 337 52.5
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 9.8e-88 328.6 336 54.8
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 1.3e-87 328.2 337 55.2
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 2.9e-87 327.0 339 53.1
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 6.4e-87 325.9 337 52.2
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 6.4e-87 325.9 303 60.1
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 8.3e-87 325.5 337 54.0
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 1.4e-86 324.7 336 53.9
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 2.4e-86 323.9 331 54.7
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.2e-85 321.6 342 53.2
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 1.6e-85 321.2 331 53.5
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 1.6e-85 321.2 337 52.2
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 3.5e-85 320.1 340 54.4
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 1.7e-84 317.8 343 53.4
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 3.9e-84 316.6 325 55.4
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 5.0e-84 316.2 309 54.4
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 1.1e-83 315.1 340 54.1
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 2.1e-82 310.8 338 50.9
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 4.7e-82 309.7 305 56.7
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 6.2e-82 309.3 337 51.6
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 8.0e-82 308.9 308 61.4
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 4.0e-81 306.6 336 51.8
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 8.9e-81 305.4 335 52.2
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 1.2e-80 305.1 337 49.9
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 2.0e-80 304.3 338 49.4
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 3.4e-80 303.5 337 52.8
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 3.4e-80 303.5 342 52.3
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 7.5e-80 302.4 337 52.5
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 7.5e-80 302.4 331 51.1
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 9.8e-80 302.0 339 50.7
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.9e-78 297.7 337 48.7
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 3.2e-78 297.0 337 47.8
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 2.7e-77 293.9 340 48.5
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 3.5e-77 293.5 338 49.4
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 1.7e-76 291.2 340 49.4
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 3.0e-76 290.4 338 49.1
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 8.6e-76 288.9 337 49.3
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 8.6e-76 288.9 361 48.2
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 1.5e-75 288.1 337 50.7
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 5.6e-75 286.2 337 47.5
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.2e-74 285.0 337 48.1
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.2e-74 285.0 337 48.1
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 1.2e-74 285.0 337 47.2
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 1.6e-74 284.6 337 46.6
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 8.1e-74 282.3 311 53.4
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 1.1e-73 282.0 337 49.3
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 6.8e-73 279.3 337 47.5
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 6.8e-73 279.3 331 50.2
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 1.2e-72 278.5 337 47.5
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 1.2e-72 278.5 337 47.2
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 3.4e-72 276.9 337 46.9
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 5.8e-72 276.2 336 49.4
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 5.8e-72 276.2 337 47.2
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 7.5e-72 275.8 333 48.0
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 7.5e-72 275.8 337 47.5
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 9.8e-72 275.4 331 46.8
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 2.2e-71 274.2 337 47.2
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 2.9e-71 273.9 337 46.6
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 2.9e-71 273.9 338 46.2
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 2.9e-71 273.9 338 46.2
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 8.3e-71 272.3 337 46.9
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 7.1e-70 269.2 339 45.1
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 1.2e-69 268.5 277 53.8
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 4.6e-69 266.5 337 45.7
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 4.6e-69 266.5 339 44.5
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 6.0e-69 266.2 337 45.7
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 6.0e-69 266.2 337 45.7
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 5.6e-67 259.6 331 46.2
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 4.4e-64 250.0 310 45.8
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 1.9e-62 244.6 271 49.8
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 3.0e-60 237.3 329 42.2
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 6.6e-60 236.1 332 43.1
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 9.6e-59 232.3 269 49.8
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 1.4e-57 228.4 309 42.4
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 1.0e-52 212.2 203 56.7
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 2.3e-52 211.1 333 38.4
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 9.3e-46 189.1 310 40.6
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.0e-31 142.5 142 50.7
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 8.4e-31 139.4 152 50.7
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.2e-29 135.6 144 47.9
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.9e-28 130.6 136 49.3
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 8.7e-28 129.4 261 36.0
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 8.7e-28 129.4 89 77.5
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 8.7e-28 129.4 89 77.5
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 9.6e-27 125.9 356 32.3
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 1.6e-26 125.2 108 63.0
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.8e-26 123.6 129 48.8
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 6.9e-25 119.8 270 35.6
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 9.0e-25 119.4 113 57.5
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 5.9e-24 116.7 247 33.6
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 2.5e-22 111.3 107 53.3
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 9.3e-22 109.4 353 31.4
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.7e-21 107.8 281 29.5
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 3.9e-20 104.0 307 26.4
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.6e-18 98.6 128 41.4
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 3.7e-18 97.4 360 26.9
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 1.1e-14 85.9 117 44.4
Rhsim11G0058600 Rhododendron simsii HOM05D023508 ORTHO05D005085 1.1e-14 85.9 93 62.4
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 2.6e-11 74.7 68 63.2
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 2.6e-11 74.7 71 49.3
RhsimUnG0222600 Rhododendron simsii HOM05D023508 ORTHO05D339159 3.3e-11 74.3 102 54.9
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 4.4e-11 73.9 68 61.8
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 2.2e-10 71.6 68 58.8
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 2.2e-10 71.6 265 26.0
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 2.4e-09 68.2 66 56.1
Oeu022108.1 Olea europaea HOM05D002428 ORTHO05D005085 9.1e-09 66.2 58 60.3
Oeu051052.1 Olea europaea HOM05D002428 ORTHO05D005085 1.2e-08 65.9 111 42.3
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 2.0e-08 65.1 72 51.4
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 5.9e-08 63.5 54 63.0
HPP92_028133 Vanilla planifolia HOM05D002428 ORTHO05D005085 1.7e-07 62.0 145 33.1


User provided reference genes

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