Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0054700 Rhododendron simsii HOM05D002428 ORTHO05D008664 1.4e-181 639.8 390 100.0
Rhsim09G0054100 Rhododendron simsii HOM05D002428 ORTHO05D008664 5.5e-181 637.9 390 99.7
vmacro00485 Vaccinium macrocarpon HOM05D002428 ORTHO05D008664 6.8e-123 444.9 456 69.5
CSS0042862 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 8.6e-110 401.4 389 70.7
CSS0043127 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 6.6e-102 375.2 390 66.7
Dinv38250 Davidia involucrata HOM05D002428 ORTHO05D008664 1.1e-101 374.4 406 62.3
CSS0022946 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D008664 8.1e-100 368.2 369 65.9
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 8.1e-100 368.2 382 61.0
Oeu006723.1 Olea europaea HOM05D002428 ORTHO05D008664 7.1e-88 328.6 396 57.3
Hma1.2p1_4144F.1_g338390 Hydrangea macrophylla HOM05D002428 ORTHO05D008664 1.6e-84 317.4 343 62.7
TAR365G0194 Trochodendron aralioides HOM05D002428 ORTHO05D008664 3.6e-84 316.2 277 61.4
Duzib151G0475 Durio zibethinus HOM05D002428 ORTHO05D008664 1.4e-80 304.3 389 60.9
Cc03_g07620 Coffea canephora HOM05D002428 ORTHO05D008664 4.2e-80 302.8 270 60.4
CiPaw.01G122800 Carya illinoinensis HOM05D002428 ORTHO05D008664 3.5e-79 299.7 415 53.7
Manes.15G051900 Manihot esculenta HOM05D002428 ORTHO05D008664 6.0e-79 298.9 394 58.6
TWI73G0822 Tripterygium wilfordii HOM05D002428 ORTHO05D008664 1.5e-77 294.3 381 58.5
Actinidia25626 Actinidia chinensis HOM05D002428 ORTHO05D008664 3.3e-77 293.1 390 58.2
MSTRG.9823 Avicennia marina HOM05D002428 ORTHO05D008664 5.6e-77 292.4 377 54.1
COL.COLO4_20264 Corchorus olitorius HOM05D002428 ORTHO05D008664 7.4e-77 292.0 389 56.8
MBI07_g22621_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D008664 1.6e-76 290.8 275 58.2
Thecc.04G206600 Theobroma cacao HOM05D002428 ORTHO05D008664 1.1e-75 288.1 385 54.3
QL06p024024 Quercus lobata HOM05D002428 ORTHO05D008664 6.9e-75 285.4 199 71.4
Potri.001G049900 Populus trichocarpa HOM05D002428 ORTHO05D008664 3.4e-74 283.1 392 57.9
Gohir.D10G143300 Gossypium hirsutum HOM05D002428 ORTHO05D008664 3.8e-73 279.6 407 53.6
Sabra01G0034800 Salix brachista HOM05D002428 ORTHO05D008664 6.5e-73 278.9 260 59.2
GSVIVG01029077001 Vitis vinifera HOM05D002428 ORTHO05D008664 2.5e-72 276.9 200 71.0
Ciclev10005170m.g Citrus clementina HOM05D002428 ORTHO05D008664 7.1e-72 275.4 264 58.3
Prupe.1G004900 Prunus persica HOM05D002428 ORTHO05D008664 9.3e-72 275.0 383 52.0
Actinidia35874 Actinidia chinensis HOM05D002428 ORTHO05D008664 1.6e-71 274.2 182 75.8
SalBow8G5518 Salvia bowleyana HOM05D002428 ORTHO05D008664 2.1e-71 273.9 396 52.8
THA.LOC104808718 Tarenaya hassleriana HOM05D002428 ORTHO05D008664 3.5e-71 273.1 363 57.3
Haze_11594 Corylus avellana HOM05D002428 ORTHO05D008664 1.0e-70 271.6 481 45.5
Nitab4.5_0004974g0040 Nicotiana tabacum HOM05D002428 ORTHO05D008664 1.0e-70 271.6 404 54.7
Gorai.011G160100 Gossypium raimondii HOM05D002428 ORTHO05D008664 5.1e-70 269.2 284 56.7
CAN.G500.15 Capsicum annuum HOM05D002428 ORTHO05D008664 1.5e-69 267.7 281 56.6
Migut.G00668 Erythranthe guttata HOM05D002428 ORTHO05D008664 4.3e-69 266.2 395 49.9
Sopen09g034720 Solanum pennellii HOM05D002428 ORTHO05D008664 7.4e-69 265.4 279 55.6
Cpa.g.sc59.123 Carica papaya HOM05D002428 ORTHO05D008664 9.6e-69 265.0 286 53.5
Solyc09g091830.4 Solanum lycopersicum HOM05D002428 ORTHO05D008664 9.6e-69 265.0 279 55.2
unitig_747.g21693 Utricularia gibba HOM05D002428 ORTHO05D008664 1.3e-68 264.6 276 54.0
PGSC0003DMG400029637 Solanum tuberosum HOM05D002428 ORTHO05D008664 3.7e-68 263.1 279 54.8
Nn1g07803 Nelumbo nucifera HOM05D002428 ORTHO05D008664 6.3e-68 262.3 407 49.4
MELO3C006321.2 Cucumis melo HOM05D002428 ORTHO05D008664 1.8e-67 260.8 398 50.8
CsaV3_3G011080 Cucumis sativus L. HOM05D002428 ORTHO05D008664 9.0e-67 258.5 396 51.3
Gohir.A10G122700 Gossypium hirsutum HOM05D002428 ORTHO05D008664 2.6e-66 256.9 400 49.5
FAN12G4076 Fragaria x ananassa HOM05D002428 ORTHO05D008664 7.6e-66 255.4 266 54.1
Aqoxy2G03893 Aquilegia oxysepala HOM05D002428 ORTHO05D008664 1.0e-65 255.0 273 54.2
FvH4_4g00470 Fragaria vesca HOM05D002428 ORTHO05D008664 1.3e-65 254.6 266 54.1
CARHR219440 Cardamine hirsuta HOM05D002428 ORTHO05D008664 1.7e-65 254.2 399 54.4
Glyma.20G198100 Glycine max HOM05D002428 ORTHO05D008664 5.0e-65 252.7 263 58.9
Peaxi162Scf00047g00729 Petunia axillaris HOM05D002428 ORTHO05D008664 5.0e-65 252.7 271 55.0
CANSAT78G1408 Cannabis sativa HOM05D002428 ORTHO05D008664 2.5e-64 250.4 400 49.0
RcHm_v2.0_Chr4g0385901 Rosa chinensis HOM05D002428 ORTHO05D008664 4.2e-64 249.6 391 51.4
SGA_v2.0_scaffold72G24054 Striga asiatica HOM05D002428 ORTHO05D008664 5.5e-64 249.2 269 54.3
Aa31LG9G3990 Aethionema arabicum HOM05D002428 ORTHO05D008664 7.2e-64 248.8 402 48.5
Carub.0007s2880 Capsella rubella HOM05D002428 ORTHO05D008664 1.2e-63 248.1 405 52.8
Ca_09779_v3 Cicer arietinum L. HOM05D002428 ORTHO05D008664 2.1e-63 247.3 277 52.3
Glyma.10G192300 Glycine max HOM05D002428 ORTHO05D008664 2.1e-63 247.3 263 55.1
DCAR_026600 Daucus carota HOM05D002428 ORTHO05D008664 6.1e-63 245.7 410 52.9
Lsat_1_v5_gn_6_59880 Lactuca sativa HOM05D002428 ORTHO05D008664 1.8e-62 244.2 410 48.0
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 3.0e-62 243.4 266 53.4
ClCG05G003410 Citrullus lanatus HOM05D002428 ORTHO05D008664 8.7e-62 241.9 418 49.8
Sed0003366 Sechium edule HOM05D002428 ORTHO05D008664 1.1e-61 241.5 403 49.1
ATR0736G155 Amborella trichopoda HOM05D002428 ORTHO05D008664 2.5e-61 240.4 297 49.8
Sp7g11440 Schrenkiella parvula HOM05D002428 ORTHO05D008664 4.8e-60 236.1 381 49.3
Nitab4.5_0003750g0020 Nicotiana tabacum HOM05D002428 ORTHO05D008664 8.2e-60 235.3 274 51.1
Lj5g0020317 Lotus japonicus HOM05D002428 ORTHO05D008664 1.1e-59 235.0 272 51.5
AL7G42860 Arabidopsis lyrata HOM05D002428 ORTHO05D008664 1.8e-59 234.2 407 48.6
Medtr1g072690 Medicago truncatula HOM05D002428 ORTHO05D008664 3.1e-59 233.4 262 51.5
PGR142G3513 Punica granatum HOM05D002428 ORTHO05D008664 3.1e-59 233.4 248 54.4
Lalb_Chr02g0150781 Lupinus albus HOM05D002428 ORTHO05D008664 9.1e-59 231.9 196 61.7
TPR.G1546 Trifolium pratense HOM05D002428 ORTHO05D008664 9.1e-59 231.9 277 50.9
Thhalv10025497m.g Eutrema salsugineum HOM05D002428 ORTHO05D008664 1.2e-58 231.5 275 50.9
Cfa014927 Carpinus fangiana HOM05D002428 ORTHO05D008664 1.5e-58 231.1 388 49.7
Lj6A561G51 Lonicera japonica HOM05D002428 ORTHO05D008664 1.5e-58 231.1 440 45.2
arahy.Tifrunner.gnm1.ann1.HBBQ58 Arachis hypogaea HOM05D002428 ORTHO05D008664 2.0e-58 230.7 422 48.8
Eucgr.H00072 Eucalyptus grandis HOM05D002428 ORTHO05D008664 2.6e-58 230.3 201 59.7
arahy.Tifrunner.gnm1.ann1.N1R11Y Arachis hypogaea HOM05D002428 ORTHO05D008664 1.0e-57 228.4 430 47.9
HPP92_025384 Vanilla planifolia HOM05D002428 ORTHO05D008664 1.0e-57 228.4 235 53.6
MD04G1005000 Malus domestica HOM05D002428 ORTHO05D008664 1.3e-57 228.0 284 49.6
Psat6g141320 Pisum sativum HOM05D002428 ORTHO05D008664 1.3e-57 228.0 267 51.3
HanXRQChr07g0185701 Helianthus annuus HOM05D002428 ORTHO05D008664 1.7e-57 227.6 409 45.5
Zm00001eb426530 Zea mays HOM05D002428 ORTHO05D008664 2.2e-57 227.3 217 56.7
BcaB03g16059 Brassica carinata HOM05D002428 ORTHO05D008664 8.5e-57 225.3 274 52.2
C04p42250 Brassica napus HOM05D002428 ORTHO05D008664 2.5e-56 223.8 271 50.9
ECA233G2351 Erigeron canadensis HOM05D002428 ORTHO05D008664 4.2e-56 223.0 275 49.1
BolC4t25803H Brassica oleracea HOM05D002428 ORTHO05D008664 7.2e-56 222.2 271 51.3
Os04g0514400 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D008664 9.4e-56 221.9 196 58.2
BcaC02g09399 Brassica carinata HOM05D002428 ORTHO05D008664 1.2e-55 221.5 271 51.3
BraA04t16542Z Brassica rapa HOM05D002428 ORTHO05D008664 7.9e-55 218.8 275 49.5
A04p08510 Brassica napus HOM05D002428 ORTHO05D008664 1.8e-54 217.6 274 49.3
Sc13g0000090 Simmondsia chinensis HOM05D002428 ORTHO05D008664 3.0e-54 216.9 197 59.9
Ah.01g018930 Amaranthus hybridus HOM05D002428 ORTHO05D008664 2.0e-53 214.2 263 45.6
Ah.01g006100 Amaranthus hybridus HOM05D002428 ORTHO05D008664 3.3e-53 213.4 273 45.4
EL10Ac9g21669 Beta vulgaris HOM05D002428 ORTHO05D008664 4.4e-53 213.0 274 44.9
PSO017G5948 Papaver somniferum HOM05D002428 ORTHO05D008664 7.4e-53 212.2 244 48.4
CDE08G1693 Ceratophyllum demersum HOM05D002428 ORTHO05D008664 9.7e-53 211.8 261 44.8
PSO063G5917 Papaver somniferum HOM05D002428 ORTHO05D008664 2.8e-52 210.3 245 48.6
Prupe.3G076100 Prunus persica HOM05D002428 ORTHO05D008664 1.0e-49 201.8 180 59.4
SEGI_22388 Sequoiadendron giganteum HOM05D002428 ORTHO05D008664 2.2e-49 200.7 198 54.0
Atru.chr4.1737 Acer truncatum HOM05D002428 ORTHO05D008664 1.1e-48 198.4 166 59.6
AUR62010416 Chenopodium quinoa HOM05D002428 ORTHO05D008664 7.2e-48 195.7 200 53.0
Phvul.010G104000 Phaseolus vulgaris HOM05D002428 ORTHO05D008664 7.2e-48 195.7 184 58.7
AUR62016799 Chenopodium quinoa HOM05D002428 ORTHO05D008664 2.0e-45 187.6 183 55.7
CDE05G2575 Ceratophyllum demersum HOM05D002428 ORTHO05D008664 2.9e-41 173.7 269 40.5
Pp3c19_7640 Physcomitrium patens HOM05D002428 ORTHO05D008664 1.3e-36 158.3 236 40.7
Mapoly0004s0042 Marchantia polymorpha HOM05D002428 ORTHO05D008664 1.4e-35 154.8 242 39.7
SMO358G0076 Selaginella moellendorffii HOM05D002428 ORTHO05D008664 9.1e-35 152.1 218 42.7
CBR_g30251 Chara braunii HOM05D002428 ORTHO05D008664 1.0e-33 148.7 222 41.4
AagrBONN_evm.TU.Sc2ySwM_344.4007 Anthoceros agrestis HOM05D002428 ORTHO05D008664 2.1e-31 141.0 238 38.7
AT4G13670 Arabidopsis thaliana HOM05D002428 ORTHO05D008664 8.3e-28 129.0 164 47.0
Oeu022362.1 Olea europaea HOM05D002428 ORTHO05D008664 5.9e-26 122.9 127 56.7
Prupe.1G083800 Prunus persica HOM05D002020 ORTHO05D002046 1.1e-16 92.0 59 78.0
Hma1.2p1_1076F.1_g254570 Hydrangea macrophylla HOM05D002428 ORTHO05D008664 1.8e-14 84.7 62 69.4
SGA_v2.0_scaffold935G53736 Striga asiatica HOM05D002428 ORTHO05D008664 3.4e-13 80.5 86 54.7
AL7G42850 Arabidopsis lyrata HOM05D002428 ORTHO05D008664 7.5e-13 79.3 157 37.6


User provided reference genes

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