Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.1e-63 246.5 126 100.0
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.1e-63 246.5 126 100.0
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.1e-28 130.2 89 77.5
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 2.0e-25 119.4 89 71.9
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.0e-21 105.5 89 61.8
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 1.1e-20 103.6 89 58.4
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.9e-20 102.8 88 62.5
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 6.2e-19 97.8 89 58.4
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 1.5e-17 93.2 79 60.8
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 3.4e-17 92.0 89 51.7
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 4.9e-16 88.2 83 54.2
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 7.1e-15 84.3 65 61.5
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 7.1e-15 84.3 79 53.2
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 9.3e-15 84.0 89 49.4
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 4.6e-14 81.6 89 48.3
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 1.3e-13 80.1 89 44.9
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 3.0e-13 79.0 88 46.6
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 6.6e-13 77.8 89 48.3
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 1.9e-12 76.3 74 51.4
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 2.5e-12 75.9 97 44.3
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 3.3e-12 75.5 91 46.2
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 4.3e-12 75.1 89 44.9
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 4.3e-12 75.1 89 43.8
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 1.3e-11 73.6 84 44.0
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.6e-11 73.2 95 49.5
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 2.8e-11 72.4 95 49.5
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 2.8e-11 72.4 89 44.9
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 3.6e-11 72.0 95 48.4
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 3.6e-11 72.0 82 50.0
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 3.6e-11 72.0 66 50.0
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 4.8e-11 71.6 89 44.9
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 6.2e-11 71.2 84 46.4
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 6.2e-11 71.2 82 50.0
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 6.2e-11 71.2 66 48.5
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 6.2e-11 71.2 86 45.3
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 8.1e-11 70.9 84 44.0
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 8.1e-11 70.9 84 44.0
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 8.1e-11 70.9 73 47.9
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 1.1e-10 70.5 65 52.3
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 1.4e-10 70.1 89 41.6
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 1.8e-10 69.7 83 48.2
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 2.4e-10 69.3 69 49.3
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 3.1e-10 68.9 89 42.7
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 3.1e-10 68.9 95 47.4
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 3.1e-10 68.9 89 43.8
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 3.1e-10 68.9 89 41.6
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 3.1e-10 68.9 71 42.3
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 4.0e-10 68.6 65 47.7
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 5.3e-10 68.2 88 40.9
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 5.3e-10 68.2 96 44.8
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 6.9e-10 67.8 65 50.8
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 6.9e-10 67.8 65 50.8
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 9.0e-10 67.4 89 42.7
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 9.0e-10 67.4 89 40.4
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 9.0e-10 67.4 95 46.3
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 9.0e-10 67.4 89 41.6
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.2e-09 67.0 65 50.8
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 1.2e-09 67.0 74 45.9
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 1.5e-09 66.6 89 39.3
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 1.5e-09 66.6 82 41.5
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 2.0e-09 66.2 89 42.7
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 2.0e-09 66.2 75 48.0
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 2.0e-09 66.2 88 42.0
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 3.4e-09 65.5 76 47.4
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.5e-09 65.1 74 44.6
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 4.5e-09 65.1 89 39.3
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 5.8e-09 64.7 74 45.9
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 7.6e-09 64.3 62 54.8
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 7.6e-09 64.3 84 39.3
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 7.6e-09 64.3 62 50.0
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 9.9e-09 63.9 89 41.6
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.3e-08 63.5 62 50.0
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.7e-08 63.2 89 39.3
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 1.7e-08 63.2 89 38.2
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 1.7e-08 63.2 84 38.1
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.2e-08 62.8 62 48.4
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 2.2e-08 62.8 63 46.0
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 2.9e-08 62.4 84 41.7
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.8e-08 62.0 65 47.7
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.4e-08 60.8 62 48.4
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.4e-08 60.8 89 38.2
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 1.1e-07 60.5 64 42.2
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 1.1e-07 60.5 89 38.2
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 1.4e-07 60.1 65 46.2
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 1.4e-07 60.1 65 46.2
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 1.4e-07 60.1 89 41.6
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 1.4e-07 60.1 84 40.5
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.4e-07 60.1 65 46.2
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.9e-07 59.7 62 46.8
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 2.4e-07 59.3 83 39.8
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 2.4e-07 59.3 64 42.2
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 2.4e-07 59.3 64 42.2
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 2.4e-07 59.3 89 39.3
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 3.2e-07 58.9 69 44.9
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 3.2e-07 58.9 64 42.2
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 4.2e-07 58.5 64 42.2
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 5.5e-07 58.2 83 38.6
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 5.5e-07 58.2 98 33.7
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 5.5e-07 58.2 84 44.0
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 7.1e-07 57.8 84 41.7
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 7.1e-07 57.8 84 41.7
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 7.1e-07 57.8 84 41.7
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 9.3e-07 57.4 83 42.2
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 9.3e-07 57.4 88 38.6
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 1.6e-06 56.6 88 37.5
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 2.1e-06 56.2 84 39.3
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 2.1e-06 56.2 84 39.3
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 2.1e-06 56.2 78 39.7
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 2.1e-06 56.2 84 36.9
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 2.7e-06 55.8 78 39.7
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 2.7e-06 55.8 78 44.9
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 3.5e-06 55.5 84 39.3
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 3.5e-06 55.5 78 39.7
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 3.5e-06 55.5 78 39.7
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 3.5e-06 55.5 78 39.7
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 3.5e-06 55.5 94 34.0
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 7.9e-06 54.3 84 40.5


User provided reference genes

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