Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0052000 Rhododendron simsii HOM05D000219 ORTHO05D006860 9.3e-81 303.5 158 100.0
vmacro00498 Vaccinium macrocarpon HOM05D000219 ORTHO05D006860 1.1e-25 120.6 64 93.8
Actinidia35957 Actinidia chinensis HOM05D000219 ORTHO05D006860 8.9e-23 110.9 64 84.4
Lj4A816G40 Lonicera japonica HOM05D000219 ORTHO05D006860 2.2e-21 106.3 64 76.6
Lsat_1_v5_gn_8_133760 Lactuca sativa HOM05D000219 ORTHO05D006860 4.9e-21 105.1 64 76.6
PSO017G4982 Papaver somniferum HOM05D000219 ORTHO05D006860 4.9e-21 105.1 64 75.0
Peaxi162Scf00525g00058 Petunia axillaris HOM05D000219 ORTHO05D006860 6.4e-21 104.8 64 75.0
Solyc05g056540.4 Solanum lycopersicum HOM05D000219 ORTHO05D006860 6.4e-21 104.8 64 76.6
Sopen05g034940 Solanum pennellii HOM05D000219 ORTHO05D006860 6.4e-21 104.8 64 76.6
PGSC0003DMG400023319 Solanum tuberosum HOM05D000219 ORTHO05D006860 6.4e-21 104.8 64 76.6
Sed0016333 Sechium edule HOM05D000219 ORTHO05D006860 8.3e-21 104.4 62 79.0
Aqoxy5G02644 Aquilegia oxysepala HOM05D000219 ORTHO05D006860 1.1e-20 104.0 64 75.0
HanXRQChr17g0555771 Helianthus annuus HOM05D000219 ORTHO05D006860 1.1e-20 104.0 64 75.0
ClCG04G003060 Citrullus lanatus HOM05D000219 ORTHO05D006860 1.4e-20 103.6 62 79.0
Hma1.2p1_0057F.1_g032090 Hydrangea macrophylla HOM05D000219 ORTHO05D006860 1.4e-20 103.6 64 71.9
CAN.G1464.10 Capsicum annuum HOM05D000219 ORTHO05D006860 3.2e-20 102.4 64 73.4
Cc04_g09500 Coffea canephora HOM05D000219 ORTHO05D006860 3.2e-20 102.4 64 76.6
CsaV3_4G027540 Cucumis sativus L. HOM05D000219 ORTHO05D006860 3.2e-20 102.4 62 77.4
TAR362G0321 Trochodendron aralioides HOM05D000219 ORTHO05D006860 3.2e-20 102.4 64 76.6
MSTRG.23502 Avicennia marina HOM05D000219 ORTHO05D006860 4.1e-20 102.1 64 71.9
Nn1g08449 Nelumbo nucifera HOM05D000219 ORTHO05D006860 4.1e-20 102.1 64 76.6
Nitab4.5_0002704g0020 Nicotiana tabacum HOM05D000219 ORTHO05D006860 4.1e-20 102.1 64 73.4
Dinv16804 Davidia involucrata HOM05D009734 ORTHO05D012100 5.4e-20 101.7 64 71.9
SGA_v2.0_scaffold54G19580 Striga asiatica HOM05D000219 ORTHO05D006860 5.4e-20 101.7 64 73.4
DCAR_006648 Daucus carota HOM05D000219 ORTHO05D006860 7.0e-20 101.3 64 71.9
Nitab4.5_0000496g0010 Nicotiana tabacum HOM05D000219 ORTHO05D006860 9.2e-20 100.9 64 71.9
MD00G1129200 Malus domestica HOM05D000219 ORTHO05D006860 2.0e-19 99.8 64 73.4
Ciclev10025619m.g Citrus clementina HOM05D000219 ORTHO05D006860 3.5e-19 99.0 64 71.9
Sc09g0004320 Simmondsia chinensis HOM05D000219 ORTHO05D006860 4.6e-19 98.6 62 75.8
GSVIVG01022421001 Vitis vinifera HOM05D000219 ORTHO05D006860 4.6e-19 98.6 64 71.9
ECA232G1642 Erigeron canadensis HOM05D000219 ORTHO05D006860 7.8e-19 97.8 60 75.0
Cpa.g.sc47.14 Carica papaya HOM05D000219 ORTHO05D006860 1.0e-18 97.4 64 73.4
Migut.H00794 Erythranthe guttata HOM05D000219 ORTHO05D006860 1.0e-18 97.4 64 71.9
SEGI_31178 Sequoiadendron giganteum HOM05D000219 ORTHO05D006860 1.0e-18 97.4 64 73.4
FvH4_1g25480 Fragaria vesca HOM05D000219 ORTHO05D006860 1.3e-18 97.1 64 71.9
FAN26G2023 Fragaria x ananassa HOM05D000219 ORTHO05D006860 1.3e-18 97.1 64 71.9
FAN28G2501 Fragaria x ananassa HOM05D000219 ORTHO05D006860 1.3e-18 97.1 64 71.9
Os08g0109200 Oryza sativa ssp. japonica HOM05D000219 ORTHO05D006860 1.3e-18 97.1 63 69.8
RcHm_v2.0_Chr2g0123611 Rosa chinensis HOM05D000219 ORTHO05D006860 1.3e-18 97.1 64 70.3
Zm00001eb260390 Zea mays HOM05D000219 ORTHO05D006860 1.7e-18 96.7 63 69.8
VMungo0251G2495 Vigna mungo HOM05D000219 ORTHO05D006860 2.3e-18 96.3 64 70.3
Phvul.002G277900 Phaseolus vulgaris HOM05D000219 ORTHO05D006860 3.0e-18 95.9 64 68.8
QL10p038963 Quercus lobata HOM05D000219 ORTHO05D006860 3.0e-18 95.9 63 68.3
Atru.chr4.1141 Acer truncatum HOM05D000219 ORTHO05D006860 3.9e-18 95.5 62 69.4
CANSAT80G0242 Cannabis sativa HOM05D000219 ORTHO05D006860 5.0e-18 95.1 64 64.1
Manes.13G076700 Manihot esculenta HOM05D000219 ORTHO05D006860 5.0e-18 95.1 64 70.3
unitig_62.g23446 Utricularia gibba HOM05D000219 ORTHO05D006860 5.0e-18 95.1 64 68.8
Lalb_Chr07g0184051 Lupinus albus HOM05D000219 ORTHO05D006860 6.6e-18 94.7 64 68.8
Prupe.4G281800 Prunus persica HOM05D000219 ORTHO05D006860 6.6e-18 94.7 64 65.6
Zm00001eb282680 Zea mays HOM05D000219 ORTHO05D006860 6.6e-18 94.7 63 68.3
ATR1136G037 Amborella trichopoda HOM05D000219 ORTHO05D006860 8.6e-18 94.4 64 68.8
Hund22176 Selenicereus undatus HOM05D000219 ORTHO05D006860 8.6e-18 94.4 62 71.0
Thecc.01G237700 Theobroma cacao HOM05D000219 ORTHO05D006860 8.6e-18 94.4 64 67.2
Zm00001eb174190 Zea mays HOM05D000219 ORTHO05D006860 1.1e-17 94.0 63 69.8
Cfa002239 Carpinus fangiana HOM05D000219 ORTHO05D006860 1.5e-17 93.6 64 68.8
ClCG04G003090 Citrullus lanatus HOM05D000219 ORTHO05D006860 1.5e-17 93.6 62 67.7
Haze_25420 Corylus avellana HOM05D000219 ORTHO05D006860 1.5e-17 93.6 64 68.8
Glyma.08G004800 Glycine max HOM05D000219 ORTHO05D006860 1.5e-17 93.6 64 65.6
Thhalv10005729m.g Eutrema salsugineum HOM05D000219 ORTHO05D006860 1.9e-17 93.2 64 68.8
Potri.004G138700 Populus trichocarpa HOM05D000219 ORTHO05D006860 1.9e-17 93.2 64 70.3
Potri.T010600 Populus trichocarpa HOM05D000219 ORTHO05D006860 1.9e-17 93.2 64 70.3
Sabra19G0003100 Salix brachista HOM05D000219 ORTHO05D006860 1.9e-17 93.2 64 70.3
Sabra19G0007500 Salix brachista HOM05D000219 ORTHO05D006860 1.9e-17 93.2 64 70.3
Sabra19G0007700 Salix brachista HOM05D000219 ORTHO05D006860 1.9e-17 93.2 64 70.3
Sabra19G0007900 Salix brachista HOM05D000219 ORTHO05D006860 1.9e-17 93.2 64 70.3
Sabra19G0008200 Salix brachista HOM05D000219 ORTHO05D006860 1.9e-17 93.2 64 70.3
Sabra19G0008600 Salix brachista HOM05D000219 ORTHO05D006860 1.9e-17 93.2 64 70.3
PGR142G1791 Punica granatum HOM05D000219 ORTHO05D006860 2.5e-17 92.8 62 69.4
Zm00001eb270900 Zea mays HOM05D000219 ORTHO05D006860 2.5e-17 92.8 63 68.3
BcaB02g09744 Brassica carinata HOM05D000219 ORTHO05D006860 3.3e-17 92.4 64 67.2
Glyma.05G197400 Glycine max HOM05D000219 ORTHO05D006860 3.3e-17 92.4 64 64.1
Sp2g26710 Schrenkiella parvula HOM05D000219 ORTHO05D006860 3.3e-17 92.4 64 67.2
AL8G40740 Arabidopsis lyrata HOM05D000219 ORTHO05D006860 4.3e-17 92.0 64 67.2
AT5G63620 Arabidopsis thaliana HOM05D000219 ORTHO05D006860 4.3e-17 92.0 64 67.2
BcaC01g02616 Brassica carinata HOM05D000219 ORTHO05D006860 4.3e-17 92.0 64 67.2
A06p30240 Brassica napus HOM05D000219 ORTHO05D006860 4.3e-17 92.0 64 67.2
C03p62820 Brassica napus HOM05D000219 ORTHO05D006860 4.3e-17 92.0 64 67.2
Carub.0008s2438 Capsella rubella HOM05D000219 ORTHO05D006860 4.3e-17 92.0 64 67.2
Lj4g0001086 Lotus japonicus HOM05D000219 ORTHO05D006860 4.3e-17 92.0 62 66.1
Sabra19G0009100 Salix brachista HOM05D000219 ORTHO05D006860 4.3e-17 92.0 64 68.8
TPR.G12844 Trifolium pratense HOM05D000219 ORTHO05D006860 4.3e-17 92.0 64 65.6
Aa31LG1G18290 Aethionema arabicum HOM05D000219 ORTHO05D006860 5.6e-17 91.7 62 67.7
BolC3t18536H Brassica oleracea HOM05D000219 ORTHO05D006860 5.6e-17 91.7 64 67.2
Gohir.A10G154900 Gossypium hirsutum HOM05D000219 ORTHO05D006860 5.6e-17 91.7 64 65.6
Gohir.D10G111000 Gossypium hirsutum HOM05D000219 ORTHO05D006860 5.6e-17 91.7 64 65.6
Gorai.011G122400 Gossypium raimondii HOM05D000219 ORTHO05D006860 5.6e-17 91.7 64 65.6
Ah.04g163090 Amaranthus hybridus HOM05D000219 ORTHO05D006860 7.3e-17 91.3 62 71.0
BraA06t25973Z Brassica rapa HOM05D000219 ORTHO05D006860 7.3e-17 91.3 64 67.2
Psat7g041480 Pisum sativum HOM05D000219 ORTHO05D006860 7.3e-17 91.3 64 64.1
TWI79G1643 Tripterygium wilfordii HOM05D000219 ORTHO05D006860 7.3e-17 91.3 64 67.2
CARHR277500 Cardamine hirsuta HOM05D000219 ORTHO05D006860 9.5e-17 90.9 64 65.6
Ca_17594_v3 Cicer arietinum L. HOM05D000219 ORTHO05D006860 9.5e-17 90.9 64 65.6
THA.LOC104800311 Tarenaya hassleriana HOM05D000219 ORTHO05D006860 9.5e-17 90.9 64 64.1
Eucgr.I00009 Eucalyptus grandis HOM05D000219 ORTHO05D006860 1.2e-16 90.5 63 68.3
arahy.Tifrunner.gnm1.ann1.4SGX54 Arachis hypogaea HOM05D000219 ORTHO05D006860 1.6e-16 90.1 62 66.1
arahy.Tifrunner.gnm1.ann1.8C4MGB Arachis hypogaea HOM05D000219 ORTHO05D006860 1.6e-16 90.1 62 66.1
AUR62004811 Chenopodium quinoa HOM05D000219 ORTHO05D006860 1.6e-16 90.1 62 67.7
Duzib147G0918 Durio zibethinus HOM05D000219 ORTHO05D006860 1.6e-16 90.1 64 64.1
Medtr8g095220 Medicago truncatula HOM05D000219 ORTHO05D006860 1.6e-16 90.1 64 62.5
AUR62036030 Chenopodium quinoa HOM05D000219 ORTHO05D006860 2.1e-16 89.7 62 66.1
Sabra19G0052800 Salix brachista HOM05D000219 ORTHO05D006860 2.1e-16 89.7 64 67.2
Sabra11G0076000 Salix brachista HOM05D004685 ORTHO05D005412 1.8e-15 86.7 64 65.6
EL10Ac4g08974 Beta vulgaris HOM05D000219 ORTHO05D006860 2.3e-15 86.3 62 66.1
CDE04G1888 Ceratophyllum demersum HOM05D000592 ORTHO05D000900 8.9e-15 84.3 63 60.3
QL10p038869 Quercus lobata HOM05D000219 ORTHO05D006860 1.2e-14 84.0 62 59.7
SMO353G0118 Selaginella moellendorffii HOM05D000219 ORTHO05D006860 4.4e-14 82.0 61 60.7
CDE04G0033 Ceratophyllum demersum HOM05D000219 ORTHO05D006860 1.9e-12 76.6 58 58.6
Mapoly0014s0120 Marchantia polymorpha HOM05D000219 ORTHO05D006860 2.4e-12 76.3 62 53.2
Sabra19G0043500 Salix brachista HOM05D013017 ORTHO05D000047 1.6e-08 63.5 36 83.3
BraA09t36487Z Brassica rapa HOM05D000219 ORTHO05D006860 6.2e-08 61.6 46 63.0
Sabra19G0046700 Salix brachista HOM05D013017 ORTHO05D000047 1.8e-07 60.1 35 80.0


User provided reference genes

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